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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | (-)-epigallocatechin 3-gallate | multiple interactions | EXP | | 6480464 | [potassium chromate(VI) co-treated with epigallocatechin gallate] results in increased expression of PTGDS mRNA | CTD | PMID:22079256 | 17alpha-ethynylestradiol | multiple interactions | ISO | RGD:11182 | 6480464 | [Ethinyl Estradiol co-treated with IL1B protein] results in increased expression of PTGDS mRNA | CTD | PMID:12072388 | 17alpha-ethynylestradiol | increases expression | ISO | RGD:11182 | 6480464 | Ethinyl Estradiol results in increased expression of PTGDS mRNA | CTD | PMID:12072388 | 17alpha-ethynylestradiol | decreases expression | ISO | RGD:11182 | 6480464 | Ethinyl Estradiol results in decreased expression of PTGDS mRNA | CTD | PMID:17942748 | 17alpha-ethynylestradiol | affects expression | ISO | RGD:11182 | 6480464 | Ethinyl Estradiol affects the expression of PTGDS mRNA | CTD | PMID:17555576 | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | EXP | | 6480464 | Tetrachlorodibenzodioxin results in increased expression of PTGDS mRNA | CTD | PMID:21296121 | 4,4'-diaminodiphenylmethane | affects expression | ISO | RGD:11182 | 6480464 | 4,4'-diaminodiphenylmethane affects the expression of PTGDS mRNA | CTD | PMID:18648102 | 5-aza-2'-deoxycytidine | multiple interactions | EXP | | 6480464 | decitabine inhibits the reaction [Smoke results in decreased expression of PTGDS mRNA] | CTD | PMID:21095227 | 8-anilinonaphthalene-1-sulfonic acid | affects binding | EXP | | 6480464 | 1-anilino-8-naphthalenesulfonate binds to PTGDS protein | CTD | PMID:16461020 | alachlor | affects expression | ISO | RGD:3433 | 6480464 | alachlor affects the expression of PTGDS mRNA | CTD | PMID:19425180 | all-trans-retinoic acid | affects binding | EXP | | 6480464 | Tretinoin binds to PTGDS protein | CTD | PMID:16461020 | all-trans-retinoic acid | affects binding | EXP | | 6480464 | PTGDS protein binds to Tretinoin | CTD | PMID:22043816 | all-trans-retinol | affects binding | EXP | | 6480464 | Vitamin A binds to PTGDS protein | CTD | PMID:16461020 | ammonium chloride | affects expression | ISO | RGD:3433 | 6480464 | Ammonium Chloride affects the expression of PTGDS mRNA | CTD | PMID:16483693 | antipyrine | decreases activity | ISO | RGD:11182 | 6480464 | Antipyrine results in decreased activity of PTGDS protein | CTD | PMID:15718289 | benzo[a]pyrene | decreases expression | ISO | RGD:3433 | 6480464 | Benzo(a)pyrene results in decreased expression of PTGDS mRNA | CTD | PMID:21839799 | benzo[a]pyrene | increases expression | ISO | RGD:11182 | 6480464 | Benzo(a)pyrene results in increased expression of PTGDS mRNA | CTD | PMID:21964900 | bis(2-chloroethyl) sulfide | increases expression | ISO | RGD:11182 | 6480464 | Mustard Gas results in increased expression of PTGDS mRNA | CTD | PMID:15674844 | cadmium dichloride | increases methylation | ISO | RGD:3433 | 6480464 | Cadmium Chloride results in increased methylation of PTGDS promoter | CTD | PMID:22457795 | carbendazim | decreases expression | ISO | RGD:3433 | 6480464 | mecarzole results in decreased expression of PTGDS mRNA | CTD | PMID:22952946 | clozapine | decreases expression | ISO | RGD:11182 | 6480464 | Clozapine results in decreased expression of PTGDS mRNA | CTD | PMID:15542763 | clozapine | increases expression | ISO | RGD:11182 | 6480464 | Clozapine results in increased expression of PTGDS mRNA | CTD | PMID:17266109 | corticosterone | increases expression | ISO | RGD:3433 | 6480464 | Corticosterone results in increased expression of PTGDS mRNA | CTD | PMID:15755911 | Delta(9)-tetrahydrocannabinol | increases expression | ISO | RGD:3433 | 6480464 | Tetrahydrocannabinol results in increased expression of PTGDS mRNA | CTD | PMID:11015613 | Delta(9)-tetrahydrocannabinol | decreases expression | ISO | RGD:11182 | 6480464 | Tetrahydrocannabinol results in decreased expression of PTGDS mRNA | CTD | PMID:12237329 | dexamethasone | increases expression | ISO | RGD:3433 | 6480464 | Dexamethasone results in increased expression of PTGDS mRNA | CTD | PMID:14618091 | diazoxide | increases expression | ISO | RGD:11182 | 6480464 | Isoproterenol results in increased expression of PTGDS mRNA | CTD | PMID:20003209 | elemental selenium | increases expression | EXP | | 6480464 | Selenium results in increased expression of PTGDS mRNA | CTD | PMID:19244175 | ethanol | decreases expression | ISO | RGD:11182 | 6480464 | Ethanol results in decreased expression of PTGDS mRNA | CTD | PMID:19167417 | fluoxetine | decreases expression | ISO | RGD:11182 | 6480464 | Fluoxetine results in decreased expression of PTGDS mRNA | CTD | PMID:17105902 | isoprenaline | increases expression | ISO | RGD:11182 | 6480464 | Isoproterenol results in increased expression of PTGDS mRNA | CTD | PMID:20003209 | isotretinoin | increases expression | EXP | | 6480464 | Isotretinoin results in increased expression of PTGDS mRNA | CTD | PMID:20436886 | mifepristone | decreases expression | EXP | | 6480464 | Mifepristone results in decreased expression of PTGDS mRNA | CTD | PMID:17584828 | N-nitrosodiethylamine | multiple interactions | ISO | RGD:3433 | 6480464 | [Diethylnitrosamine co-treated with beta-Naphthoflavone] results in increased expression of PTGDS mRNA | CTD | PMID:18164116 | nicotinic acid | multiple interactions | EXP | | 6480464 | PTGDS protein promotes the reaction [Niacin results in increased activity of PPARG protein] | CTD | PMID:16386710 | nitroglycerin | increases expression | ISO | RGD:3433 | 6480464 | Nitroglycerin results in increased expression of PTGDS mRNA | CTD | PMID:12102619 | paraquat | multiple interactions | EXP | | 6480464 | Paraquat promotes the reaction [RELA protein binds to PTGDS promoter]; more ... | CTD | PMID:22043816 | paraquat | decreases response to substance | EXP | | 6480464 | PTGDS protein results in decreased susceptibility to Paraquat | CTD | PMID:22043816 | paraquat | increases expression | EXP | | 6480464 | Paraquat results in increased expression of PTGDS mRNA; more ... | CTD | PMID:22043816 | phencyclidine | increases expression | ISO | RGD:11182 | 6480464 | Phencyclidine results in increased expression of PTGDS mRNA | CTD | PMID:17266109 | phenobarbital | affects expression | ISO | RGD:11182 | 6480464 | Phenobarbital affects the expression of PTGDS mRNA | CTD | PMID:23091169 | prostaglandin H2 | increases metabolic processing | ISO | RGD:3433 | 6480464 | PTGDS protein results in increased metabolism of Prostaglandin H2 | CTD | PMID:22043816 | raloxifene | multiple interactions | ISO | RGD:11182 | 6480464 | [Raloxifene co-treated with IL1B protein] results in increased expression of PTGDS mRNA | CTD | PMID:12072388 | selenium atom | increases expression | EXP | | 6480464 | Selenium results in increased expression of PTGDS mRNA | CTD | PMID:19244175 | tamoxifen | affects expression | ISO | RGD:11182 | 6480464 | Tamoxifen affects the expression of PTGDS mRNA | CTD | PMID:17555576 | tetrachloromethane | increases expression | ISO | RGD:3433 | 6480464 | Carbon Tetrachloride results in increased expression of PTGDS mRNA | CTD | PMID:16644059 | tetracycline | increases expression | ISO | RGD:11182 | 6480464 | Tetracycline results in increased expression of PTGDS mRNA | CTD | PMID:16917069 | trichloroethene | decreases expression | ISO | RGD:3433 | 6480464 | Trichloroethylene results in decreased expression of PTGDS mRNA | CTD | PMID:17905399 | trimellitic anhydride | decreases expression | ISO | RGD:11182 | 6480464 | trimellitic anhydride results in decreased expression of PTGDS mRNA | CTD | PMID:19042947 | vancomycin | decreases expression | ISO | RGD:11182 | 6480464 | Vancomycin results in decreased expression of PTGDS mRNA | CTD | PMID:18930951 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | Arachidonic acid metabolism |
| Metabolic pathways | |
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | Arachidonic acid metabolism |
| Metabolic pathways | |
References - curated| 1. |
GOA_HUMAN data from the GO Consortium |
| 2. |
Hirawa N, etal., Hypertension. 2002 Feb;39(2 Pt 2):449-54. |
| 3. |
KEGG |
| 4. |
Miwa Y, etal., Biochem Biophys Res Commun. 2004 Sep 17;322(2):428-33. |
| 5. |
Nagata A, etal., Proc Natl Acad Sci U S A 1991 May 1;88(9):4020-4. |
| 6. |
Ogawa M, etal., Nephrol Dial Transplant. 2006 Apr;21(4):924-34. Epub 2005 Dec 29. |
| 7. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 8. |
Ragolia L, etal., J Biol Chem. 2005 Aug 19;280(33):29946-55. Epub 2005 Jun 21. |
| 9. |
RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 10462696 |
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| 9475419 | |
| 9844724 |
RGD Disease Portals| PTGDS has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| PTGDS (Homo sapiens) |
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| Ptgds (Mus musculus) |
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| Ptgds (Rattus norvegicus) |
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Position Markers| D9S905 |
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| STS-M98539 |
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| RH93947 |
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QTLs in Region (Human Genome Assembly GRCh37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NM_000954 | (Get FASTA) | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AA621632 | (Get FASTA) | Search GEO for Microarray Profiles |
| ABBA01022734 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AI659247 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK075333 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK312817 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL807752 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AMYH01021881 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AMYH01021882 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AY026356 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC005939 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC041463 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BG037037 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BM686612 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BT019921 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BT019922 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH471090 | (Get FASTA) | Search GEO for Microarray Profiles | |
| DQ297141 | (Get FASTA) | Search GEO for Microarray Profiles | |
| M61900 | (Get FASTA) | Search GEO for Microarray Profiles | |
| M98538 | (Get FASTA) | Search GEO for Microarray Profiles | |
| M98539 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_000954 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_000945 | |||||||||||||||||||||||||
| Peptide Label: | precursor | |||||||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_000945 | (Get FASTA) |
| GenBank Protein | AAA36494 | (Get FASTA) |
| AAB51074 | (Get FASTA) | |
| AAH05939 | (Get FASTA) | |
| AAK07679 | (Get FASTA) | |
| AAV38724 | (Get FASTA) | |
| AAV38725 | (Get FASTA) | |
| ABB84464 | (Get FASTA) | |
| BAG35674 | (Get FASTA) | |
| BAG52113 | (Get FASTA) | |
| EAW88321 | (Get FASTA) | |
| EAW88322 | (Get FASTA) | |
| EAW88323 | (Get FASTA) | |
| P41222 | (Get FASTA) |
Promoters| RGD ID: | 6863108 | ||||||||||
| Promoter ID: | EPDNEW_H4719 | ||||||||||
| Type: | initiation region | ||||||||||
| Name: | OSBPL10_5 | ||||||||||
| Description: | oxysterol binding protein-like 10 | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||||
| Position: |
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| RGD ID: | 6807999 | ||||||||||
| Promoter ID: | HG_KWN:65667 | ||||||||||
| Type: | Non-CpG | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | HeLa_S3 | ||||||||||
| Transcripts: | UC004CKD.1 | ||||||||||
| Position: |
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| RGD ID: | 6808000 | ||||||||||
| Promoter ID: | HG_KWN:65670 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | HeLa_S3, K562 | ||||||||||
| Transcripts: | OTTHUMT00000055192, OTTHUMT00000055193, OTTHUMT00000055197 | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| COSMIC | PTGDS | COSMIC |
| Ensembl Genes | ENSG00000107317 | ENTREZGENE |
| Ensembl Protein | ENSP00000360687 | ENTREZGENE |
| Ensembl Transcript | ENST00000371625 | ENTREZGENE |
| Entrez Gene | 5730 | ENTREZGENE |
| Gene3D-CATH | Calycin | UniProtKB/Swiss-Prot |
| Germonline | ENSG00000107317 | |
| HGNC ID | 9592 | ENTREZGENE |
| HomoloGene Group ID | 737 | ENTREZGENE |
| HPRD ID | 08904 | ENTREZGENE |
| InterPro | Calycin | UniProtKB/Swiss-Prot |
| Calycin-like | UniProtKB/Swiss-Prot | |
| Lipocalin | UniProtKB/Swiss-Prot | |
| Lipocalin_CS | UniProtKB/Swiss-Prot | |
| Lipocln_cytosolic_FA-bd_dom | UniProtKB/Swiss-Prot | |
| PstgldnD_synth | UniProtKB/Swiss-Prot | |
| IPI | IPI00013179 | UniProtKB/Swiss-Prot |
| IPI00514208 | UniProtKB/TrEMBL | |
| IPI00514285 | UniProtKB/TrEMBL | |
| KEGG Report | hsa:5730 | ENTREZGENE, UniProtKB/Swiss-Prot |
| OMIM | 176803 | OMIM |
| Pfam | Lipocalin | UniProtKB/Swiss-Prot |
| PharmGKB | PA33945 | PharmGKB, RGD |
| PRINTS | LIPOCALIN | UniProtKB/Swiss-Prot |
| PGNDSYNTHASE | UniProtKB/Swiss-Prot | |
| PROSITE | LIPOCALIN | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | Calycin | UniProtKB/Swiss-Prot |
| UniGene | Hs.446429 | ENTREZGENE |
| UniProt | F8W7I2_HUMAN | UniProtKB/TrEMBL |
| H0Y4L4_HUMAN | UniProtKB/TrEMBL | |
| H0Y5A1_HUMAN | UniProtKB/TrEMBL | |
| PTGDS_HUMAN | UniProtKB/Swiss-Prot | |
| Q5SQ11_HUMAN | UniProtKB/TrEMBL | |
| Q5SQ12_HUMAN | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2011-08-16 | PTGDS | prostaglandin D2 synthase 21kDa (brain) | PTGDS | prostaglandin D2 synthase 21kDa (brain) | Symbol and/or name change | 39860 | APPROVED |
| More on PTGDS | |||
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Entrez Gene | ||
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Ensembl Gene | ||
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HGNC Report | ||
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NCBI Map Viewer | ||
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Vista | ||
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Vista + UCSC | ||
| RGD Object Information | |
| RGD ID: | 737496 |
| Created: | 2004-02-06 |
| Species: | Homo sapiens |
| Last Modified: | 2013-05-14 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




