Plagl1 (pleiomorphic adenoma gene-like 1) - Rat Genome Database

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Gene: Plagl1 (pleiomorphic adenoma gene-like 1) Mus musculus
Analyze
Symbol: Plagl1
Name: pleiomorphic adenoma gene-like 1
RGD ID: 736873
MGI Page MGI
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of gene expression and skeletal muscle cell differentiation. Predicted to be located in Golgi apparatus and nuclear body. Is expressed in several structures, including alimentary system; brain; embryo mesenchyme; heart; and sensory organ. Orthologous to human PLAGL1 (PLAG1 like zinc finger 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610311E24R; 2610311E24Rik; hypothetical protein LOC70469; Lot1; RIKEN cDNA 2610311E24 gene; uncharacterized protein LOC70469; Zac; Zac1; zinc finger protein PLAGL1; zinc finger protein regulator of apoptosis and cell cycle arrest
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391012,966,576 - 13,007,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1012,936,248 - 13,007,438 (+)EnsemblGRCm39 Ensembl
GRCm381013,090,832 - 13,131,694 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1013,060,504 - 13,131,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv371012,810,594 - 12,851,500 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361012,781,107 - 12,820,086 (+)NCBIMGSCv36mm8
Celera1012,986,982 - 13,032,881 (+)NCBICelera
Cytogenetic Map10A2NCBI
cM Map104.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-colchicine  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-(hydroxymethyl)cytosine  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (EXP)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (EXP)
C60 fullerene  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
coumarin  (ISO)
crocidolite asbestos  (EXP,ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dimethylarsinic acid  (ISO)
dorsomorphin  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
gentamycin  (ISO)
geraniol  (ISO)
glucose  (EXP)
indometacin  (ISO)
isoprenaline  (EXP)
kojic acid  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
levonorgestrel  (ISO)
lithium chloride  (ISO)
methamphetamine  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
mitoxantrone  (ISO)
monosodium L-glutamate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nickel dichloride  (EXP,ISO)
nickel sulfate  (EXP,ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
quercetin  (ISO)
riboflavin  (ISO)
SB 431542  (ISO)
SCH 23390  (ISO)
sodium arsenite  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (ISO)
Testosterone propionate  (EXP)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP,ISO)
topotecan  (ISO)
Trapidil  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vincaleukoblastine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9184226   PMID:9927333   PMID:10349636   PMID:10597250   PMID:10669760   PMID:10757814   PMID:10922068   PMID:10936046   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11448939  
PMID:11578877   PMID:12119104   PMID:12466851   PMID:12477932   PMID:12627233   PMID:14610273   PMID:14745959   PMID:15286800   PMID:15328020   PMID:15350644   PMID:15604097   PMID:15618518  
PMID:15647320   PMID:15782199   PMID:15844099   PMID:15888726   PMID:15890332   PMID:16141072   PMID:16141073   PMID:16193498   PMID:16575187   PMID:16602821   PMID:16987518   PMID:17072860  
PMID:17084362   PMID:17559664   PMID:18287559   PMID:18299245   PMID:18448610   PMID:18663001   PMID:18697905   PMID:18799693   PMID:19136628   PMID:19161594   PMID:19169743   PMID:19389355  
PMID:19423711   PMID:19535498   PMID:19649645   PMID:19723774   PMID:19762426   PMID:20117169   PMID:20167925   PMID:20168089   PMID:20363751   PMID:20436479   PMID:20947170   PMID:21194568  
PMID:21267068   PMID:21305342   PMID:21546906   PMID:21549111   PMID:21592321   PMID:21864583   PMID:21873635   PMID:22106414   PMID:22147266   PMID:22547676   PMID:22723905   PMID:22865650  
PMID:24073291   PMID:24125951   PMID:24396065   PMID:24952961   PMID:26424889   PMID:26455966   PMID:26610203   PMID:27824289   PMID:28317850   PMID:28535371   PMID:28560839   PMID:28963472  
PMID:28985358   PMID:29079520   PMID:29513653   PMID:30361413   PMID:30896835   PMID:31375626   PMID:33006313   PMID:33171905   PMID:33500348   PMID:34921112   PMID:35083765   PMID:36200916  
PMID:36751888  


Genomics

Comparative Map Data
Plagl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391012,966,576 - 13,007,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1012,936,248 - 13,007,438 (+)EnsemblGRCm39 Ensembl
GRCm381013,090,832 - 13,131,694 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1013,060,504 - 13,131,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv371012,810,594 - 12,851,500 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361012,781,107 - 12,820,086 (+)NCBIMGSCv36mm8
Celera1012,986,982 - 13,032,881 (+)NCBICelera
Cytogenetic Map10A2NCBI
cM Map104.72NCBI
PLAGL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386143,940,300 - 144,064,599 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6143,940,300 - 144,064,599 (-)EnsemblGRCh38hg38GRCh38
GRCh376144,261,437 - 144,385,736 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366144,303,130 - 144,427,428 (-)NCBINCBI36Build 36hg18NCBI36
Build 346144,303,131 - 144,371,246NCBI
Celera6145,001,862 - 145,126,194 (-)NCBICelera
Cytogenetic Map6q24.2NCBI
HuRef6141,825,091 - 141,949,488 (-)NCBIHuRef
CHM1_16144,524,320 - 144,648,632 (-)NCBICHM1_1
T2T-CHM13v2.06145,132,991 - 145,257,328 (-)NCBIT2T-CHM13v2.0
Plagl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819,297,066 - 9,337,394 (+)NCBIGRCr8
mRatBN7.217,477,295 - 7,517,229 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl17,477,177 - 7,517,228 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx17,172,194 - 7,212,067 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0113,171,292 - 13,211,196 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.017,454,454 - 7,494,354 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.017,219,587 - 7,270,169 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17,252,349 - 7,259,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018,857,033 - 8,906,172 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.417,882,674 - 7,922,504 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.117,882,673 - 7,922,502 (+)NCBI
Celera15,968,740 - 6,008,667 (+)NCBICelera
RH 3.4 Map1113.0RGD
Cytogenetic Map1p13NCBI
Plagl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543616,423,216 - 16,510,799 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543616,452,797 - 16,511,872 (+)NCBIChiLan1.0ChiLan1.0
PLAGL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25163,922,068 - 164,048,337 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16161,816,591 - 161,942,741 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06141,715,599 - 141,841,862 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16146,435,427 - 146,480,233 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6146,435,622 - 146,480,224 (-)Ensemblpanpan1.1panPan2
PLAGL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1135,418,470 - 35,529,230 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl135,419,577 - 35,528,530 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha136,314,541 - 36,425,009 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0135,599,733 - 35,710,276 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl135,599,535 - 35,705,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1135,460,186 - 35,570,384 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0135,345,452 - 35,455,508 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0135,655,698 - 35,766,229 (-)NCBIUU_Cfam_GSD_1.0
Plagl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946130,370,449 - 130,389,005 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366252,248,907 - 2,263,001 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366252,214,023 - 2,265,101 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAGL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,364,696 - 21,370,614 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,299,830 - 21,371,070 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2123,640,710 - 23,708,147 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLAGL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11329,225,265 - 29,291,868 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1329,283,405 - 29,291,868 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660401,359,309 - 1,426,279 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plagl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475310,292,038 - 10,359,480 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475310,292,050 - 10,359,424 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plagl1
1633 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4075
Count of miRNA genes:774
Interacting mature miRNAs:1018
Transcripts:ENSMUST00000121325, ENSMUST00000121646, ENSMUST00000121766, ENSMUST00000123135, ENSMUST00000124252, ENSMUST00000126880, ENSMUST00000129989, ENSMUST00000130313, ENSMUST00000130449, ENSMUST00000130638, ENSMUST00000130800, ENSMUST00000130894, ENSMUST00000135095, ENSMUST00000135261, ENSMUST00000135826, ENSMUST00000138433, ENSMUST00000139262, ENSMUST00000141068, ENSMUST00000141944, ENSMUST00000143582, ENSMUST00000144437, ENSMUST00000145103, ENSMUST00000149881, ENSMUST00000150773
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse
11532724Sluc44c_msusceptibility to lung cancer 44c (mouse)10126289265Mouse
11532723Sluc44d_msusceptibility to lung cancer 44d (mouse)10126289265Mouse
11532722Sluc44e_msusceptibility to lung cancer 44e (mouse)10126289265Mouse
11532721Sluc44_msusceptibility to lung cancer 44 (mouse)10126289265Mouse
11532720Sluc44a_msusceptibility to lung cancer 44a (mouse)10126289265Mouse
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse
11533917Mts2_mmammary tumor susceptibility 2 (mouse)10126289265Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301796Mop2_mmorphine preference 2 (mouse)Not determined10928911929028424Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
13208570Bmiq9_mbody mass index QTL 9 (mouse)101287574424875898Mouse

Markers in Region
UniSTS:236311  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381013,116,051 - 13,116,133UniSTSGRCm38
MGSCv371012,835,857 - 12,835,939UniSTSGRCm37
Celera1013,012,244 - 13,012,326UniSTS
Cytogenetic Map10A2UniSTS
cM Map1015.0UniSTS
Plagl1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381013,127,704 - 13,128,274UniSTSGRCm38
Celera1013,023,892 - 13,024,462UniSTS
Cytogenetic Map10A2UniSTS
cM Map104.72UniSTS
PMC85624P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381013,128,215 - 13,128,678UniSTSGRCm38
MGSCv371012,848,021 - 12,848,484UniSTSGRCm37
Celera1013,024,403 - 13,024,866UniSTS
Celera1013,024,403 - 13,025,681UniSTS
Cytogenetic Map10A2UniSTS
cM Map1015.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001364643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF147785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF324471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ308559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ308560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB365402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB540903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF437330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ425893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000121325   ⟹   ENSMUSP00000112889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 13,006,726 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,130,982 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121646   ⟹   ENSMUSP00000112847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,532 - 13,007,438 (+)Ensembl
GRCm38.p6 Ensembl1013,090,788 - 13,131,694 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121766   ⟹   ENSMUSP00000113710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,579 - 13,006,713 (+)Ensembl
GRCm38.p6 Ensembl1013,090,835 - 13,130,969 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,435 - 13,000,604 (+)Ensembl
GRCm38.p6 Ensembl1013,090,691 - 13,124,860 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,532 - 13,000,643 (+)Ensembl
GRCm38.p6 Ensembl1013,090,788 - 13,124,899 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 13,000,724 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,124,980 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129989
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 12,982,117 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,106,373 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130313   ⟹   ENSMUSP00000117321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,989,209 - 13,003,085 (+)Ensembl
GRCm38.p6 Ensembl1013,113,465 - 13,127,341 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 12,989,951 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,114,207 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130638
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,585 - 12,989,188 (+)Ensembl
GRCm38.p6 Ensembl1013,090,841 - 13,113,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,618 - 12,988,628 (+)Ensembl
GRCm38.p6 Ensembl1013,090,874 - 13,112,884 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 12,988,292 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,112,548 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,456 - 13,000,759 (+)Ensembl
GRCm38.p6 Ensembl1013,090,712 - 13,125,015 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 13,000,661 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,124,917 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 12,992,525 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,116,781 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 12,992,508 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,116,764 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 12,992,464 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,116,720 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 13,000,643 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,124,899 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,618 - 12,988,528 (+)Ensembl
GRCm38.p6 Ensembl1013,090,874 - 13,112,784 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143582   ⟹   ENSMUSP00000115595
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,757 - 13,000,774 (+)Ensembl
GRCm38.p6 Ensembl1013,091,013 - 13,125,030 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 12,992,448 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,116,704 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145103   ⟹   ENSMUSP00000120581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,992,108 - 13,000,811 (+)Ensembl
GRCm38.p6 Ensembl1013,116,364 - 13,125,067 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 12,992,466 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,116,722 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,966,576 - 12,984,645 (+)Ensembl
GRCm38.p6 Ensembl1013,090,832 - 13,108,901 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193426   ⟹   ENSMUSP00000141514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,936,248 - 13,003,098 (+)Ensembl
GRCm38.p6 Ensembl1013,060,504 - 13,127,354 (+)Ensembl
RefSeq Acc Id: NM_001364643   ⟹   NP_001351572
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,966,576 - 13,007,438 (+)NCBI
GRCm381013,090,832 - 13,131,694 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364644   ⟹   NP_001351573
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,966,576 - 13,007,438 (+)NCBI
GRCm381013,090,832 - 13,131,694 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364645   ⟹   NP_001351574
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,966,576 - 13,007,438 (+)NCBI
GRCm381013,090,832 - 13,131,694 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009538   ⟹   NP_033564
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,966,576 - 13,007,438 (+)NCBI
GRCm381013,090,832 - 13,131,694 (+)NCBI
MGSCv371012,810,594 - 12,851,500 (+)RGD
Celera1012,986,982 - 13,032,881 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_033564   ⟸   NM_009538
- Peptide Label: isoform a
- UniProtKB: Q9JLQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001351574   ⟸   NM_001364645
- Peptide Label: isoform b
- UniProtKB: Q3UQW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001351573   ⟸   NM_001364644
- Peptide Label: isoform b
- UniProtKB: Q3UQW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001351572   ⟸   NM_001364643
- Peptide Label: isoform b
- UniProtKB: Q3UQW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000120581   ⟸   ENSMUST00000145103
RefSeq Acc Id: ENSMUSP00000117321   ⟸   ENSMUST00000130313
RefSeq Acc Id: ENSMUSP00000115595   ⟸   ENSMUST00000143582
RefSeq Acc Id: ENSMUSP00000112889   ⟸   ENSMUST00000121325
RefSeq Acc Id: ENSMUSP00000141514   ⟸   ENSMUST00000193426
RefSeq Acc Id: ENSMUSP00000112847   ⟸   ENSMUST00000121646
RefSeq Acc Id: ENSMUSP00000113710   ⟸   ENSMUST00000121766
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JLQ4-F1-model_v2 AlphaFold Q9JLQ4 1-704 view protein structure

Promoters
RGD ID:6819737
Promoter ID:MM_KWN:3557
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000105548,   ENSMUST00000116261,   ENSMUST00000121325,   ENSMUST00000121766,   NM_009538,   OTTMUST00000077322,   OTTMUST00000077323,   OTTMUST00000077324,   OTTMUST00000077325,   OTTMUST00000077326,   OTTMUST00000077327,   OTTMUST00000077328,   OTTMUST00000077329,   OTTMUST00000077330,   OTTMUST00000077331,   OTTMUST00000077332,   OTTMUST00000077333,   OTTMUST00000077334,   OTTMUST00000077335,   OTTMUST00000077336,   OTTMUST00000077337,   OTTMUST00000077359,   OTTMUST00000077361,   UC007EKJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361012,810,439 - 12,810,939 (+)MPROMDB
RGD ID:8671506
Promoter ID:EPDNEW_M13784
Type:multiple initiation site
Name:Plagl1_1
Description:Mus musculus pleiomorphic adenoma gene-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381013,090,832 - 13,090,892EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1100874 AgrOrtholog
Ensembl Genes ENSMUSG00000019817 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000121325 ENTREZGENE
  ENSMUST00000121325.8 UniProtKB/TrEMBL
  ENSMUST00000121646 ENTREZGENE
  ENSMUST00000121646.8 UniProtKB/TrEMBL
  ENSMUST00000121766 ENTREZGENE
  ENSMUST00000121766.8 UniProtKB/TrEMBL
  ENSMUST00000130313.2 UniProtKB/TrEMBL
  ENSMUST00000145103.2 UniProtKB/TrEMBL
  ENSMUST00000193426.6 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
MGD MGI:1100874 ENTREZGENE
NCBI Gene 22634 ENTREZGENE
PANTHER ASPARAGINE-RICH ZINC FINGER PROTEIN AZF1 UniProtKB/TrEMBL
  HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9 UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN 1 UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN PLAGL1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Plagl1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0A6YWE3_MOUSE UniProtKB/TrEMBL
  B0LAB3_MOUSE UniProtKB/TrEMBL
  B0QZX4_MOUSE UniProtKB/TrEMBL
  B0QZX5_MOUSE UniProtKB/TrEMBL
  B7ZP38_MOUSE UniProtKB/TrEMBL
  O35745_MOUSE UniProtKB/TrEMBL
  Q3UQR2_MOUSE UniProtKB/TrEMBL
  Q3UQW2 ENTREZGENE, UniProtKB/TrEMBL
  Q9EPT3_MOUSE UniProtKB/TrEMBL
  Q9JLQ4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-03 Plagl1  pleiomorphic adenoma gene-like 1  2610311E24Rik  RIKEN cDNA 2610311E24 gene  Data merged from RGD:1612708 737654 PROVISIONAL