Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | type 2 diabetes mellitus | | ISO | SCTR (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:30718926 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | type 2 diabetes mellitus | | ISO | SCTR (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:30718926 | |
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# | Reference Title | Reference Citation |
1. | Electronic Transfer of Homolog Data | MGD and Homologene mouse data transfer |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
4. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
5. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
6. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12477932 | PMID:12679517 | PMID:15489334 | PMID:16141072 | PMID:16141073 | PMID:17008357 | PMID:17283064 | PMID:20578263 |
PMID:20739612 | PMID:20927047 | PMID:21159798 | PMID:21267068 | PMID:21873635 | PMID:24273196 | PMID:24356714 | PMID:24599969 | PMID:24769669 | PMID:26037144 | PMID:27080132 | PMID:27115285 |
PMID:27330080 | PMID:27649563 | PMID:28082350 | PMID:29977037 | PMID:30036520 | PMID:30449620 | PMID:31251081 | PMID:31479491 | PMID:32027952 | PMID:33928675 | PMID:35051436 | PMID:36220076 |
PMID:37344929 | PMID:37774845 |
Sctr (Mus musculus - house mouse) |
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SCTR (Homo sapiens - human) |
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Sctr (Rattus norvegicus - Norway rat) |
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Sctr (Chinchilla lanigera - long-tailed chinchilla) |
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SCTR (Pan paniscus - bonobo/pygmy chimpanzee) |
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SCTR (Canis lupus familiaris - dog) |
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Sctr (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SCTR (Sus scrofa - pig) |
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SCTR (Chlorocebus sabaeus - green monkey) |
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Sctr (Heterocephalus glaber - naked mole-rat) |
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Variants in Sctr
1753 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D1Mit54 |
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RefSeq Transcripts | NM_001012322 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001311077 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006529684 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006529686 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006529688 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006529689 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006529690 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011248029 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011248031 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030254873 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036165668 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036165669 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036165670 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036165671 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_004942727 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC165443 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK032652 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY255623 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC089355 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466520 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000072886 ⟹ ENSMUSP00000072660 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000189037 ⟹ ENSMUSP00000139932 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001012322 ⟹ NP_001012322 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001311077 ⟹ NP_001298006 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006529684 ⟹ XP_006529747 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006529686 ⟹ XP_006529749 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006529688 ⟹ XP_006529751 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006529689 ⟹ XP_006529752 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006529690 ⟹ XP_006529753 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011248029 ⟹ XP_011246331 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011248031 ⟹ XP_011246333 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030254873 ⟹ XP_030110733 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036165668 ⟹ XP_036021561 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036165669 ⟹ XP_036021562 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036165670 ⟹ XP_036021563 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036165671 ⟹ XP_036021564 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XR_004942727 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001012322 | (Get FASTA) | NCBI Sequence Viewer |
NP_001298006 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006529747 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006529749 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006529751 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006529752 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006529753 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011246331 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011246333 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030110733 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036021561 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036021562 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036021563 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036021564 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH89355 | (Get FASTA) | NCBI Sequence Viewer |
AAO85135 | (Get FASTA) | NCBI Sequence Viewer | |
EDL39805 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000072660 | ||
ENSMUSP00000072660.5 | |||
ENSMUSP00000139932 | |||
ENSMUSP00000139932.2 | |||
GenBank Protein | Q5FWI2 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001012322 ⟸ NM_001012322 |
- Peptide Label: | isoform 1 precursor |
- UniProtKB: | H7BX37 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006529747 ⟸ XM_006529684 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | XP_006529749 ⟸ XM_006529686 |
- Peptide Label: | isoform X2 |
- Sequence: |
RefSeq Acc Id: | XP_006529751 ⟸ XM_006529688 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_006529752 ⟸ XM_006529689 |
- Peptide Label: | isoform X7 |
- Sequence: |
RefSeq Acc Id: | XP_006529753 ⟸ XM_006529690 |
- Peptide Label: | isoform X9 |
- Sequence: |
RefSeq Acc Id: | XP_011246331 ⟸ XM_011248029 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_011246333 ⟸ XM_011248031 |
- Peptide Label: | isoform X5 |
- Sequence: |
RefSeq Acc Id: | NP_001298006 ⟸ NM_001311077 |
- Peptide Label: | isoform 2 precursor |
- UniProtKB: | Q80T66 (UniProtKB/Swiss-Prot), Q5FWI2 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_030110733 ⟸ XM_030254873 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | ENSMUSP00000072660 ⟸ ENSMUST00000072886 |
RefSeq Acc Id: | ENSMUSP00000139932 ⟸ ENSMUST00000189037 |
RefSeq Acc Id: | XP_036021564 ⟸ XM_036165671 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_036021563 ⟸ XM_036165670 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_036021561 ⟸ XM_036165668 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_036021562 ⟸ XM_036165669 |
- Peptide Label: | isoform X4 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q5FWI2-F1-model_v2 | AlphaFold | Q5FWI2 | 1-447 | view protein structure |
RGD ID: | 6874724 | ||||||||
Promoter ID: | EPDNEW_M813 | ||||||||
Type: | initiation region | ||||||||
Name: | Sctr_1 | ||||||||
Description: | Mus musculus secretin receptor , transcript variant 2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:2441720 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000026387 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000072886 | ENTREZGENE |
ENSMUST00000072886.11 | UniProtKB/TrEMBL | |
ENSMUST00000189037 | ENTREZGENE | |
ENSMUST00000189037.2 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 4.10.1240.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Rhodopsin 7-helix transmembrane proteins | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | 7tmB1_secretin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GPCR_2-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GPCR_2_extracell_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GPCR_2_extracellular_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GPCR_2_secretin-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GPCR_2_secretin-like_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GPCR_2_secretin_rcpt | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:319229 | UniProtKB/Swiss-Prot |
MGD | MGI:2441720 | ENTREZGENE |
NCBI Gene | 319229 | ENTREZGENE |
PANTHER | PDF RECEPTOR-LIKE PROTEIN-RELATED | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR45620:SF13 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | 7tm_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
HRM | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Sctr | PhenoGen |
PRINTS | GPCRSECRETIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SECRETINR | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PROSITE | G_PROTEIN_RECEP_F2_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
G_PROTEIN_RECEP_F2_2 | UniProtKB/TrEMBL | |
G_PROTEIN_RECEP_F2_3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
G_PROTEIN_RECEP_F2_4 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | HormR | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | Family A G protein-coupled receptor-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF111418 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | H7BX37 | ENTREZGENE, UniProtKB/TrEMBL |
Q5FWI2 | ENTREZGENE | |
Q80T66 | ENTREZGENE | |
SCTR_MOUSE | UniProtKB/Swiss-Prot | |
UniProt Secondary | Q80T66 | UniProtKB/Swiss-Prot |