Sctr (secretin receptor) - Rat Genome Database

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Gene: Sctr (secretin receptor) Mus musculus
Analyze
Symbol: Sctr
Name: secretin receptor
RGD ID: 736214
MGI Page MGI
Description: Enables secretin receptor activity. Involved in several processes, including diet induced thermogenesis; intracellular water homeostasis; and positive regulation of cAMP-mediated signaling. Predicted to be located in cytoplasmic microtubule. Predicted to be active in plasma membrane. Orthologous to human SCTR (secretin receptor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6530402O03Rik; MGC102218; SCT-R
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,934,710 - 119,991,269 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,934,624 - 119,991,266 (+)EnsemblGRCm39 Ensembl
GRCm381120,006,879 - 120,063,539 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,006,894 - 120,063,536 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,903,557 - 121,960,111 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,834,524 - 121,891,084 (+)NCBIMGSCv36mm8
Celera1122,666,492 - 122,721,998 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12679517   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17008357   PMID:17283064   PMID:20578263  
PMID:20739612   PMID:20927047   PMID:21159798   PMID:21267068   PMID:21873635   PMID:24273196   PMID:24356714   PMID:24599969   PMID:24769669   PMID:26037144   PMID:27080132   PMID:27115285  
PMID:27330080   PMID:27649563   PMID:28082350   PMID:29977037   PMID:30036520   PMID:30449620   PMID:31251081   PMID:31479491   PMID:32027952   PMID:33928675   PMID:35051436   PMID:36220076  
PMID:37344929   PMID:37774845  


Genomics

Comparative Map Data
Sctr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,934,710 - 119,991,269 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,934,624 - 119,991,266 (+)EnsemblGRCm39 Ensembl
GRCm381120,006,879 - 120,063,539 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,006,894 - 120,063,536 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,903,557 - 121,960,111 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,834,524 - 121,891,084 (+)NCBIMGSCv36mm8
Celera1122,666,492 - 122,721,998 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.57NCBI
SCTR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382119,439,843 - 119,524,483 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2119,439,843 - 119,525,301 (-)EnsemblGRCh38hg38GRCh38
GRCh372120,197,419 - 120,282,059 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362119,913,889 - 119,998,498 (-)NCBINCBI36Build 36hg18NCBI36
Build 342119,913,650 - 119,998,136NCBI
Celera2113,523,544 - 113,607,897 (-)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2112,522,346 - 112,606,933 (-)NCBIHuRef
CHM1_12120,200,944 - 120,285,215 (-)NCBICHM1_1
T2T-CHM13v2.02119,873,301 - 119,957,984 (-)NCBIT2T-CHM13v2.0
Sctr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,680,562 - 33,744,049 (+)NCBIGRCr8
mRatBN7.21331,127,781 - 31,190,162 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1331,127,858 - 31,180,189 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1333,709,188 - 33,765,504 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01334,997,029 - 35,053,348 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01332,271,626 - 32,327,778 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01336,039,241 - 36,090,515 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1336,039,283 - 36,090,530 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01341,160,339 - 41,201,354 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1331,000,848 - 31,067,419 (+)NCBICelera
Cytogenetic Map13q11NCBI
Sctr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545910,218,210 - 10,270,212 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545910,192,449 - 10,270,483 (+)NCBIChiLan1.0ChiLan1.0
SCTR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21321,439,472 - 21,524,924 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B21,454,520 - 21,539,895 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B6,374,400 - 6,458,595 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B119,952,714 - 120,036,326 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B119,952,714 - 120,036,326 (-)Ensemblpanpan1.1panPan2
SCTR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11930,505,059 - 30,577,371 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1930,526,055 - 30,577,075 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1930,768,711 - 30,844,497 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01931,890,123 - 31,966,380 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1931,889,725 - 31,961,438 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11930,576,866 - 30,653,075 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01930,743,177 - 30,819,391 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01931,929,956 - 32,001,323 (+)NCBIUU_Cfam_GSD_1.0
Sctr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530390,701,781 - 90,766,441 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646950,865,115 - 50,915,695 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646950,851,569 - 50,916,183 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCTR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,707,555 - 31,785,955 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,707,755 - 31,782,193 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21535,970,285 - 36,021,782 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCTR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11010,802,156 - 10,883,884 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1010,833,507 - 10,883,605 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606111,803,913 - 11,884,184 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sctr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473225,633,149 - 25,686,128 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473225,611,603 - 25,687,129 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sctr
1753 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:163
Count of miRNA genes:153
Interacting mature miRNAs:158
Transcripts:ENSMUST00000072886
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1301753Tir3a_mtrypansomiasis infection response 3a (mouse)Not determined197053986131054190Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186483929120483929Mouse
12879491Hfnq1_mhair follicle number QTL 1 (mouse)193310310123636759Mouse
1301123Cd8mts2_mCD8 memory T cell subset 2 (mouse)Not determined196618386130618557Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
13452398Leusq5_mleucocytosis susceptibility QTL 5 (mouse)198474785126386517Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
12879492Ecgnq1_meccrine gland number QTL 1 (mouse)1103278062120535225Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
4141329Mleu1_mmyeloid leukemia survival 1 (mouse)Not determined89786512123786512Mouse
1357760Synch3_msynechia 3 (mouse)Not determined192901442126901550Mouse
4141627Bwq7_mbody weight, QTL 7 (mouse)Not determined192940909124497796Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189786512123786512Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
10045976Tir6_mtrypanosome infection response 6 (mouse)Not determined193536855120529678Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse

Markers in Region
D1Mit54  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,040,804 - 120,040,937UniSTSGRCm38
MGSCv371121,937,381 - 121,937,514UniSTSGRCm37
Celera1122,699,131 - 122,699,272UniSTS
Cytogenetic Map1E2.3UniSTS
cM Map163.8UniSTS
Whitehead Genetic166.7UniSTS
Whitehead_YAC1 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001311077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC165443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY255623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000072886   ⟹   ENSMUSP00000072660
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1119,934,624 - 119,991,266 (+)Ensembl
GRCm38.p6 Ensembl1120,006,894 - 120,063,536 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189037   ⟹   ENSMUSP00000139932
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1119,934,764 - 119,991,264 (+)Ensembl
GRCm38.p6 Ensembl1120,007,034 - 120,063,534 (+)Ensembl
RefSeq Acc Id: NM_001012322   ⟹   NP_001012322
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,934,710 - 119,991,264 (+)NCBI
GRCm381120,006,980 - 120,063,534 (+)NCBI
MGSCv371121,903,557 - 121,960,111 (+)RGD
Celera1122,666,492 - 122,721,998 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001311077   ⟹   NP_001298006
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,934,710 - 119,991,264 (+)NCBI
GRCm381120,006,980 - 120,063,534 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529684   ⟹   XP_006529747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,934,968 - 119,991,269 (+)NCBI
GRCm381120,006,881 - 120,063,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529686   ⟹   XP_006529749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,934,968 - 119,991,269 (+)NCBI
GRCm381120,006,882 - 120,063,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529688   ⟹   XP_006529751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,950,279 - 119,991,269 (+)NCBI
GRCm381120,022,547 - 120,063,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529689   ⟹   XP_006529752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,962,374 - 119,991,269 (+)NCBI
GRCm381120,034,636 - 120,063,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529690   ⟹   XP_006529753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,972,410 - 119,991,269 (+)NCBI
GRCm381120,044,680 - 120,063,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248029   ⟹   XP_011246331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,949,912 - 119,991,269 (+)NCBI
GRCm381120,022,183 - 120,063,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248031   ⟹   XP_011246333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,959,326 - 119,991,269 (+)NCBI
GRCm381120,031,595 - 120,063,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254873   ⟹   XP_030110733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,962,371 - 119,991,269 (+)NCBI
GRCm381120,034,635 - 120,063,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165668   ⟹   XP_036021561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,934,968 - 119,990,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165669   ⟹   XP_036021562
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,950,279 - 119,991,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165670   ⟹   XP_036021563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,934,968 - 119,990,929 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165671   ⟹   XP_036021564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,934,968 - 119,990,930 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942727
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391119,934,968 - 119,991,269 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001012322   ⟸   NM_001012322
- Peptide Label: isoform 1 precursor
- UniProtKB: H7BX37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529747   ⟸   XM_006529684
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006529749   ⟸   XM_006529686
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006529751   ⟸   XM_006529688
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006529752   ⟸   XM_006529689
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006529753   ⟸   XM_006529690
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_011246331   ⟸   XM_011248029
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011246333   ⟸   XM_011248031
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001298006   ⟸   NM_001311077
- Peptide Label: isoform 2 precursor
- UniProtKB: Q80T66 (UniProtKB/Swiss-Prot),   Q5FWI2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030110733   ⟸   XM_030254873
- Peptide Label: isoform X8
RefSeq Acc Id: ENSMUSP00000072660   ⟸   ENSMUST00000072886
RefSeq Acc Id: ENSMUSP00000139932   ⟸   ENSMUST00000189037
RefSeq Acc Id: XP_036021564   ⟸   XM_036165671
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036021563   ⟸   XM_036165670
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036021561   ⟸   XM_036165668
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036021562   ⟸   XM_036165669
- Peptide Label: isoform X4
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FWI2-F1-model_v2 AlphaFold Q5FWI2 1-447 view protein structure

Promoters
RGD ID:6874724
Promoter ID:EPDNEW_M813
Type:initiation region
Name:Sctr_1
Description:Mus musculus secretin receptor , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381120,007,054 - 120,007,114EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2441720 AgrOrtholog
Ensembl Genes ENSMUSG00000026387 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072886 ENTREZGENE
  ENSMUST00000072886.11 UniProtKB/TrEMBL
  ENSMUST00000189037 ENTREZGENE
  ENSMUST00000189037.2 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.1240.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 7tmB1_secretin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:319229 UniProtKB/Swiss-Prot
MGD MGI:2441720 ENTREZGENE
NCBI Gene 319229 ENTREZGENE
PANTHER PDF RECEPTOR-LIKE PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45620:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sctr PhenoGen
PRINTS GPCRSECRETIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SECRETINR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HormR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF111418 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt H7BX37 ENTREZGENE, UniProtKB/TrEMBL
  Q5FWI2 ENTREZGENE
  Q80T66 ENTREZGENE
  SCTR_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q80T66 UniProtKB/Swiss-Prot