Csnk1d (casein kinase 1, delta) - Rat Genome Database

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Gene: Csnk1d (casein kinase 1, delta) Mus musculus
Analyze
Symbol: Csnk1d
Name: casein kinase 1, delta
RGD ID: 735980
MGI Page MGI
Description: Enables protein kinase activity. Involved in several processes, including circadian regulation of gene expression; midbrain dopaminergic neuron differentiation; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Acts upstream of or within non-motile cilium assembly. Located in nucleus. Is expressed in several structures, including branchial arch; central nervous system; facial prominence ectoderm; foregut; and genitourinary system. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome 2. Orthologous to human CSNK1D (casein kinase 1 delta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1200006A05Rik; AA409348; casein kinase I; casein kinase I isoform delta; CKI-delta; CKId; D930010H05Rik; tau-protein kinase CSNK1D
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,848,535 - 120,882,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,849,816 - 120,882,156 (-)EnsemblGRCm39 Ensembl
GRCm3811120,957,709 - 120,991,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,958,990 - 120,991,330 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,823,055 - 120,852,647 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,777,831 - 120,807,423 (-)NCBIMGSCv36mm8
Celera11132,698,912 - 132,728,516 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-ethoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methoxyethanol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
caffeine  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
coumarin  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dieldrin  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (EXP)
ivermectin  (ISO)
L-methionine  (EXP)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methylformamide  (EXP)
N-Vinyl-2-pyrrolidone  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
phenobarbital  (ISO)
pyrazoles  (ISO)
pyrimidines  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
tunicamycin  (EXP)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vanadyl sulfate  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. A new molecular link between the fibrillar and granulovacuolar lesions of Alzheimer's disease. Ghoshal N, etal., Am J Pathol. 1999 Oct;155(4):1163-72.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Screen for genes regulated during early kidney morphogenesis. Leimeister C, etal., Dev Genet 1999;24(3-4):273-83.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Casein kinase 1 delta mRNA is upregulated in Alzheimer disease brain. Yasojima K, etal., Brain Res. 2000 May 19;865(1):116-20.
14. CK1delta and CK1epsilon are components of human 40S subunit precursors required for cytoplasmic 40S maturation. Zemp I, etal., J Cell Sci. 2014 Mar 15;127(Pt 6):1242-53. doi: 10.1242/jcs.138719. Epub 2014 Jan 14.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10848614   PMID:11042159   PMID:11076861   PMID:11398185   PMID:11865049   PMID:12181329   PMID:12477932   PMID:12520002   PMID:12533789   PMID:12924632  
PMID:14610273   PMID:15033168   PMID:15489334   PMID:15761153   PMID:15782199   PMID:15800623   PMID:16014721   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17027228   PMID:17101137  
PMID:17218255   PMID:17244647   PMID:17967808   PMID:18287559   PMID:18953287   PMID:19414593   PMID:19515997   PMID:19805222   PMID:19948962   PMID:20192920   PMID:20421981   PMID:21179498  
PMID:21267068   PMID:21422228   PMID:21677750   PMID:21680841   PMID:21873635   PMID:21930935   PMID:22235331   PMID:22922362   PMID:23636092   PMID:23766372   PMID:23840637   PMID:24100552  
PMID:24648492   PMID:24817118   PMID:24952961   PMID:25843713   PMID:26496610   PMID:27439882   PMID:28125685   PMID:28886336   PMID:28963394   PMID:29045831   PMID:29056748   PMID:29107558  
PMID:29191835   PMID:29463694   PMID:29784786   PMID:29784789   PMID:31334659   PMID:31363163   PMID:31392916   PMID:32253237   PMID:32325033   PMID:32354999   PMID:32581705   PMID:33526663  
PMID:37578019   PMID:37643163  


Genomics

Comparative Map Data
Csnk1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,848,535 - 120,882,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,849,816 - 120,882,156 (-)EnsemblGRCm39 Ensembl
GRCm3811120,957,709 - 120,991,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,958,990 - 120,991,330 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,823,055 - 120,852,647 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,777,831 - 120,807,423 (-)NCBIMGSCv36mm8
Celera11132,698,912 - 132,728,516 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.75NCBI
CSNK1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,239,019 - 82,273,750 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,239,023 - 82,273,700 (-)EnsemblGRCh38hg38GRCh38
GRCh371780,196,895 - 80,231,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,795,527 - 77,824,862 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,795,530 - 77,824,862NCBI
Celera1776,796,458 - 76,825,073 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,600,124 - 75,630,539 (-)NCBIHuRef
CHM1_11780,286,271 - 80,316,893 (-)NCBICHM1_1
T2T-CHM13v2.01783,107,753 - 83,142,487 (-)NCBIT2T-CHM13v2.0
Csnk1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,713,497 - 106,754,953 (-)NCBIGRCr8
mRatBN7.210106,221,992 - 106,256,620 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,221,992 - 106,256,614 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,329,802 - 111,360,776 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,792,841 - 110,823,815 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,146,084 - 106,177,075 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,147,786 - 110,182,413 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,148,600 - 110,182,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,738,952 - 109,769,940 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,166,244 - 110,197,233 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,177,115 - 110,211,716 (-)NCBI
Celera10104,764,644 - 104,795,629 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Csnk1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506904,660 - 935,330 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955506904,659 - 936,293 (+)NCBIChiLan1.0ChiLan1.0
CSNK1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,778,853 - 98,813,136 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,680,413 - 103,714,803 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,648,677 - 76,683,054 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,461,764 - 82,494,348 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,462,467 - 82,494,348 (-)Ensemblpanpan1.1panPan2
CSNK1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1983,395 - 110,309 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl973,215 - 110,269 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9678,798 - 713,246 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09670,196 - 704,640 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9670,181 - 704,614 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19695,250 - 729,697 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09825,215 - 859,661 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09900,309 - 934,743 (+)NCBIUU_Cfam_GSD_1.0
Csnk1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602662,224 - 691,072 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,724,406 - 5,743,180 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,720,887 - 5,743,206 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSNK1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12768,865 - 796,595 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112768,856 - 794,495 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.212969,952 - 977,839 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSNK1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,157,875 - 74,192,142 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,160,648 - 74,192,108 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,753,881 - 45,787,624 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csnk1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,032,021 - 11,058,551 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480111,031,102 - 11,074,100 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Csnk1d
799 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4348
Count of miRNA genes:905
Interacting mature miRNAs:1243
Transcripts:ENSMUST00000018274, ENSMUST00000070575, ENSMUST00000131375, ENSMUST00000139267, ENSMUST00000141071, ENSMUST00000146837, ENSMUST00000154483, ENSMUST00000155070
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse

Markers in Region
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
RH124850  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811120,962,162 - 120,962,258UniSTSGRCm38
MGSCv3711120,823,476 - 120,823,572UniSTSGRCm37
Celera11132,699,333 - 132,699,429UniSTS
Cytogenetic Map11E2UniSTS
Csnk1d  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811120,962,378 - 120,963,338UniSTSGRCm38
Celera11132,699,549 - 132,700,509UniSTS
Cytogenetic Map11E2UniSTS
cM Map1184.75UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_027874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_139059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK004606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY009834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY420266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000018274   ⟹   ENSMUSP00000018274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,852,575 - 120,882,156 (-)Ensembl
GRCm38.p6 Ensembl11120,961,749 - 120,991,330 (-)Ensembl
RefSeq Acc Id: ENSMUST00000070575   ⟹   ENSMUSP00000070721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,852,575 - 120,881,918 (-)Ensembl
GRCm38.p6 Ensembl11120,961,749 - 120,991,092 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,854,474 - 120,856,512 (-)Ensembl
GRCm38.p6 Ensembl11120,963,648 - 120,965,686 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,858,438 - 120,858,887 (-)Ensembl
GRCm38.p6 Ensembl11120,967,612 - 120,968,061 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,854,599 - 120,862,451 (-)Ensembl
GRCm38.p6 Ensembl11120,963,773 - 120,971,625 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146837   ⟹   ENSMUSP00000115055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,863,316 - 120,881,813 (-)Ensembl
GRCm38.p6 Ensembl11120,972,490 - 120,990,987 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154483   ⟹   ENSMUSP00000117472
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,863,298 - 120,881,697 (-)Ensembl
GRCm38.p6 Ensembl11120,972,472 - 120,990,871 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,873,683 - 120,881,877 (-)Ensembl
GRCm38.p6 Ensembl11120,982,857 - 120,991,051 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239115   ⟹   ENSMUSP00000158953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,849,816 - 120,882,156 (-)Ensembl
GRCm38.p6 Ensembl11120,958,990 - 120,991,330 (-)Ensembl
RefSeq Acc Id: NM_027874   ⟹   NP_082150
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,852,580 - 120,881,885 (-)NCBI
GRCm3811120,961,741 - 120,991,333 (-)NCBI
MGSCv3711120,823,055 - 120,852,647 (-)RGD
Celera11132,698,912 - 132,728,516 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_139059   ⟹   NP_620690
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,852,580 - 120,881,885 (-)NCBI
GRCm3811120,961,741 - 120,991,333 (-)NCBI
MGSCv3711120,823,055 - 120,852,647 (-)RGD
Celera11132,698,912 - 132,728,516 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248662   ⟹   XP_011246964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,849,001 - 120,882,180 (-)NCBI
GRCm3811120,958,178 - 120,991,350 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248663   ⟹   XP_011246965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,848,535 - 120,882,180 (-)NCBI
GRCm3811120,957,709 - 120,991,350 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156201   ⟹   XP_036012094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,852,574 - 120,882,180 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_620690   ⟸   NM_139059
- Peptide Label: isoform 1
- UniProtKB: Q3TZK2 (UniProtKB/Swiss-Prot),   Q99KK4 (UniProtKB/Swiss-Prot),   Q9DC28 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_082150   ⟸   NM_027874
- Peptide Label: isoform 2
- UniProtKB: Q3UBT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246965   ⟸   XM_011248663
- Peptide Label: isoform X1
- UniProtKB: Q3USK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246964   ⟸   XM_011248662
- Peptide Label: isoform X1
- UniProtKB: Q3USK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000070721   ⟸   ENSMUST00000070575
RefSeq Acc Id: ENSMUSP00000158953   ⟸   ENSMUST00000239115
RefSeq Acc Id: ENSMUSP00000115055   ⟸   ENSMUST00000146837
RefSeq Acc Id: ENSMUSP00000117472   ⟸   ENSMUST00000154483
RefSeq Acc Id: ENSMUSP00000018274   ⟸   ENSMUST00000018274
RefSeq Acc Id: XP_036012094   ⟸   XM_036156201
- Peptide Label: isoform X2
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DC28-F1-model_v2 AlphaFold Q9DC28 1-415 view protein structure

Promoters
RGD ID:6820668
Promoter ID:MM_KWN:10991
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000009422
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611120,826,521 - 120,827,717 (-)MPROMDB
RGD ID:6820669
Promoter ID:MM_KWN:10992
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000009426
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611120,829,066 - 120,829,566 (-)MPROMDB
RGD ID:6820670
Promoter ID:MM_KWN:10993
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   MEF_B6
Transcripts:OTTMUST00000009427
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611120,832,821 - 120,833,472 (-)MPROMDB
RGD ID:6820667
Promoter ID:MM_KWN:10994
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000106124,   NM_027874,   NM_139059,   OTTMUST00000009423,   OTTMUST00000009424,   OTTMUST00000009425,   UC007MUZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611120,852,326 - 120,852,877 (-)MPROMDB
RGD ID:8677758
Promoter ID:EPDNEW_M16909
Type:initiation region
Name:Csnk1d_2
Description:Mus musculus casein kinase 1, delta , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16910  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811120,991,059 - 120,991,119EPDNEW
RGD ID:8677760
Promoter ID:EPDNEW_M16910
Type:initiation region
Name:Csnk1d_1
Description:Mus musculus casein kinase 1, delta , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16909  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811120,991,324 - 120,991,384EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1355272 AgrOrtholog
Ensembl Genes ENSMUSG00000025162 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018274 ENTREZGENE
  ENSMUST00000018274.10 UniProtKB/Swiss-Prot
  ENSMUST00000070575 ENTREZGENE
  ENSMUST00000070575.14 UniProtKB/Swiss-Prot
  ENSMUST00000146837.2 UniProtKB/TrEMBL
  ENSMUST00000154483.8 UniProtKB/TrEMBL
  ENSMUST00000239115 ENTREZGENE
  ENSMUST00000239115.2 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:104318 UniProtKB/Swiss-Prot
MGD MGI:1355272 ENTREZGENE
NCBI Gene 104318 ENTREZGENE
PANTHER CASEIN KINASE I ISOFORM DELTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CASEIN KINASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Csnk1d PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F6VU53_MOUSE UniProtKB/TrEMBL
  F7A4U8_MOUSE UniProtKB/TrEMBL
  KC1D_MOUSE UniProtKB/Swiss-Prot
  Q3TZK2 ENTREZGENE
  Q3UBT6 ENTREZGENE, UniProtKB/TrEMBL
  Q3USK2 ENTREZGENE, UniProtKB/TrEMBL
  Q99KK4 ENTREZGENE
  Q9DC28 ENTREZGENE
UniProt Secondary Q3TZK2 UniProtKB/Swiss-Prot
  Q99KK4 UniProtKB/Swiss-Prot