Bcat1 (branched chain aminotransferase 1, cytosolic) - Rat Genome Database

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Gene: Bcat1 (branched chain aminotransferase 1, cytosolic) Mus musculus
Analyze
Symbol: Bcat1
Name: branched chain aminotransferase 1, cytosolic
RGD ID: 735669
MGI Page MGI
Description: Enables branched-chain-amino-acid transaminase activity. Acts upstream of or within branched-chain amino acid catabolic process. Located in cytosol. Is expressed in several structures, including alimentary system; craniocervical region bone; limb; nervous system; and sensory organ. Orthologous to human BCAT1 (branched chain amino acid transaminase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BCAT; BCAT(c); Bcat-; BCATc; branched-chain-amino-acid aminotransferase, cytosolic; Eca3; Eca39
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396144,939,561 - 145,021,883 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6144,939,561 - 145,021,910 (-)EnsemblGRCm39 Ensembl
GRCm386144,993,835 - 145,076,157 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6144,993,835 - 145,076,184 (-)EnsemblGRCm38mm10GRCm38
MGSCv376144,942,355 - 145,024,677 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366144,956,312 - 145,033,242 (-)NCBIMGSCv36mm8
Celera6148,047,506 - 148,145,066 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
allyl alcohol  (ISO)
Allylamine  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bucladesine  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcidiol  (ISO)
carbamazepine  (ISO)
carbofuran  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
chloroacetaldehyde  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDT  (ISO)
deguelin  (ISO)
dexamethasone  (EXP)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
diethyl phthalate  (ISO)
diethylstilbestrol  (EXP)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
diquat  (EXP)
doxorubicin  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenofibrate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
heptachlor  (ISO)
hydrogen peroxide  (ISO)
ifosfamide  (ISO)
isoprenaline  (ISO)
lead diacetate  (EXP,ISO)
maneb  (EXP)
medroxyprogesterone acetate  (ISO)
metacetamol  (EXP)
metaproterenol  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
mirex  (ISO)
mitoxantrone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
neomycin  (EXP)
nickel atom  (ISO)
orciprenaline  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
pentane-2,3-dione  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylbutazone  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
scopolamine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP,ISO)
triamterene  (ISO)
tributylstannane  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
trovafloxacin  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IDA)
mitochondrion  (HDA,IBA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Characterization of a tumor-associated gene, a member of a novel family of genes encoding membrane glycoproteins. Ben-Porath I and Benvenisty N, Gene 1996 Dec 12;183(1-2):69-75.
2. Cloning and expression of the mammalian cytosolic branched chain aminotransferase isoenzyme. Hutson SM, etal., J Biol Chem 1995 Dec 22;270(51):30344-52.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Upregulation of cytosolic branched chain aminotransferase in substantia nigra following developmental striatal target injury. Kholodilov NG, etal., Brain Res Mol Brain Res 2000 Feb 22;75(2):281-6.
5. Identification of candidate lung cancer susceptibility genes in mouse using oligonucleotide arrays. Lemon WJ, etal., J Med Genet 2002 Sep;39(9):644-55.
6. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. ENU mutagenesis identifies mice with mitochondrial branched-chain aminotransferase deficiency resembling human maple syrup urine disease. Wu JY, etal., J Clin Invest 2004 Feb;113(3):434-40.
Additional References at PubMed
PMID:1340466   PMID:2251142   PMID:8692959   PMID:8889548   PMID:9657861   PMID:10349636   PMID:10512203   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11360186  
PMID:12477932   PMID:12520002   PMID:12545163   PMID:12819125   PMID:12904583   PMID:14563018   PMID:14610273   PMID:14681479   PMID:15064703   PMID:15489334   PMID:15735755   PMID:15840001  
PMID:16141072   PMID:16141073   PMID:16783635   PMID:16828066   PMID:16862160   PMID:16919269   PMID:17150414   PMID:17767905   PMID:17967808   PMID:18614015   PMID:18799693   PMID:19521500  
PMID:20736162   PMID:21267068   PMID:21873635   PMID:24154525   PMID:24349566   PMID:24847056   PMID:24952961   PMID:26351290   PMID:26902285   PMID:28219950   PMID:28699638   PMID:29459677  
PMID:30318512   PMID:32325033   PMID:32553114   PMID:32938905   PMID:33271468   PMID:35012549   PMID:35562710   PMID:35760874   PMID:36114006   PMID:36182869   PMID:36260995   PMID:36965015  
PMID:38369471  


Genomics

Comparative Map Data
Bcat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396144,939,561 - 145,021,883 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6144,939,561 - 145,021,910 (-)EnsemblGRCm39 Ensembl
GRCm386144,993,835 - 145,076,157 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6144,993,835 - 145,076,184 (-)EnsemblGRCm38mm10GRCm38
MGSCv376144,942,355 - 145,024,677 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366144,956,312 - 145,033,242 (-)NCBIMGSCv36mm8
Celera6148,047,506 - 148,145,066 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.27NCBI
BCAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,810,024 - 24,949,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,810,024 - 24,949,101 (-)EnsemblGRCh38hg38GRCh38
GRCh371224,962,958 - 25,102,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,855,545 - 24,993,499 (-)NCBINCBI36Build 36hg18NCBI36
Build 341224,855,561 - 24,993,499NCBI
Celera1230,109,823 - 30,249,287 (-)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1224,732,841 - 24,872,358 (-)NCBIHuRef
CHM1_11224,928,106 - 25,067,454 (-)NCBICHM1_1
T2T-CHM13v2.01224,679,997 - 24,819,416 (-)NCBIT2T-CHM13v2.0
Bcat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84179,695,662 - 179,777,973 (-)NCBIGRCr8
mRatBN7.24177,964,834 - 178,046,573 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4177,964,834 - 178,046,597 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4184,266,200 - 184,349,150 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,050,703 - 180,133,655 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04178,671,128 - 178,754,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,259,305 - 179,340,021 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,259,308 - 179,339,795 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04243,463,299 - 243,491,574 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04243,444,839 - 243,460,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44182,641,517 - 182,692,917 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14182,886,640 - 182,938,041 (-)NCBI
Celera4166,483,269 - 166,533,125 (-)NCBICelera
Cytogenetic Map4q44NCBI
Bcat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541319,981,328 - 20,087,638 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541319,975,395 - 20,087,656 (-)NCBIChiLan1.0ChiLan1.0
BCAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21071,867,317 - 72,003,917 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11271,863,725 - 72,000,314 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01261,364,154 - 61,500,827 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11263,978,116 - 64,114,127 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1263,978,116 - 64,107,463 (+)Ensemblpanpan1.1panPan2
BCAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12722,536,297 - 22,643,350 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2722,535,254 - 22,636,959 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2723,725,637 - 23,832,733 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02722,769,835 - 22,843,576 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2722,735,227 - 22,841,025 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12722,584,192 - 22,657,415 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02722,569,213 - 22,676,273 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02723,897,853 - 24,005,177 (-)NCBIUU_Cfam_GSD_1.0
Bcat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494584,462,896 - 84,532,986 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365482,385,756 - 2,454,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl548,814,313 - 48,925,973 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1548,814,212 - 48,925,632 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2552,534,770 - 52,624,453 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11124,578,760 - 24,709,541 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1124,579,487 - 24,709,132 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606910,417,680 - 10,554,451 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475214,106,884 - 14,164,064 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475214,074,701 - 14,166,075 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bcat1
516 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3011
Count of miRNA genes:927
Interacting mature miRNAs:1273
Transcripts:ENSMUST00000032402, ENSMUST00000048252, ENSMUST00000111742, ENSMUST00000123930, ENSMUST00000136819, ENSMUST00000145911, ENSMUST00000149769, ENSMUST00000154611, ENSMUST00000155693
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse
12879916Shm5_msperm head morphology 5 (mouse)6132266532145601739Mouse
1301820Mop1_mmorphine preference 1 (mouse)Not determined6132578005146330736Mouse
15092053Wegrme2_mweek eight growth rate, maternal effect 2 (mouse)6140445726147201498Mouse
15092061Wfigrme1_mweek five growth rate, maternal effect 1 (mouse)6140445726147201498Mouse
15092045Wngrme2_mweek nine growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
15092047Wsigrme2_mweek six growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
15092052Wsegrme2_mweek seven growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
15092056Mgrme1_mmid growth rate, maternal effect 1 (mouse)6140497205147252976Mouse
15092058Lgrme2_mlate growth rate, maternal effect 2 (mouse)6140497205147252976Mouse
15092060Wfogrme1_mweek four growth rate, maternal effect 1 (mouse)6140497205147252976Mouse
4141536Idd6.2_minsulin dependent diabetes susceptibility 6.2 (mouse)Not determined6143556651146215056Mouse

Markers in Region
UniSTS:235574  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386145,004,204 - 145,004,416UniSTSGRCm38
MGSCv376144,952,724 - 144,952,936UniSTSGRCm37
Celera6148,059,303 - 148,059,515UniSTS
Cytogenetic Map6G3UniSTS
cM Map673.9UniSTS
G36411  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386145,023,439 - 145,023,536UniSTSGRCm38
MGSCv376144,971,959 - 144,972,056UniSTSGRCm37
Celera6148,088,146 - 148,088,243UniSTS
Celera6148,079,212 - 148,079,309UniSTS
Cytogenetic Map6G3UniSTS
cM Map673.9UniSTS
Bcat1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6G3UniSTS
cM Map673.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW491045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY781109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU207315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU207316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S66383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U42443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X17502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000032402   ⟹   ENSMUSP00000032402
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,939,561 - 144,994,538 (-)Ensembl
GRCm38.p6 Ensembl6144,993,835 - 145,048,812 (-)Ensembl
RefSeq Acc Id: ENSMUST00000048252   ⟹   ENSMUSP00000039744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,949,844 - 145,021,910 (-)Ensembl
GRCm38.p6 Ensembl6145,004,118 - 145,076,184 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111742   ⟹   ENSMUSP00000107371
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,944,884 - 145,021,910 (-)Ensembl
GRCm38.p6 Ensembl6144,999,158 - 145,076,184 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123930   ⟹   ENSMUSP00000120180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,964,918 - 144,993,579 (-)Ensembl
GRCm38.p6 Ensembl6145,019,192 - 145,047,853 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136819   ⟹   ENSMUSP00000117708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,961,402 - 144,978,569 (-)Ensembl
GRCm38.p6 Ensembl6145,015,676 - 145,032,843 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,950,124 - 144,980,923 (-)Ensembl
GRCm38.p6 Ensembl6145,004,398 - 145,035,197 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149769   ⟹   ENSMUSP00000116091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,978,535 - 144,993,387 (-)Ensembl
GRCm38.p6 Ensembl6145,032,809 - 145,047,661 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,978,599 - 144,986,593 (-)Ensembl
GRCm38.p6 Ensembl6145,032,873 - 145,040,867 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,978,516 - 144,986,481 (-)Ensembl
GRCm38.p6 Ensembl6145,032,790 - 145,040,755 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204138   ⟹   ENSMUSP00000144968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6144,953,456 - 144,994,336 (-)Ensembl
GRCm38.p6 Ensembl6145,007,730 - 145,048,610 (-)Ensembl
RefSeq Acc Id: NM_001024468   ⟹   NP_001019639
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396144,939,561 - 144,994,538 (-)NCBI
GRCm386144,993,835 - 145,048,812 (-)NCBI
MGSCv376144,942,355 - 145,024,677 (-)RGD
Celera6148,047,506 - 148,145,066 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007532   ⟹   NP_031558
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396144,939,561 - 145,021,883 (-)NCBI
GRCm386144,993,835 - 145,076,157 (-)NCBI
MGSCv376144,942,355 - 145,024,677 (-)RGD
Celera6148,047,506 - 148,145,066 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011241566   ⟹   XP_011239868
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396144,939,561 - 144,994,150 (-)NCBI
GRCm386144,993,835 - 145,048,424 (-)NCBI
Sequence:
RefSeq Acc Id: NP_031558   ⟸   NM_007532
- Peptide Label: isoform 2
- UniProtKB: Q7TMT2 (UniProtKB/Swiss-Prot),   P24288 (UniProtKB/Swiss-Prot),   Q3TJN1 (UniProtKB/TrEMBL),   Q9CXX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001019639   ⟸   NM_001024468
- Peptide Label: isoform 1
- UniProtKB: Q8CBC8 (UniProtKB/TrEMBL),   Q9CXX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239868   ⟸   XM_011241566
- Peptide Label: isoform X1
- UniProtKB: Q9CXX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000144968   ⟸   ENSMUST00000204138
RefSeq Acc Id: ENSMUSP00000107371   ⟸   ENSMUST00000111742
RefSeq Acc Id: ENSMUSP00000032402   ⟸   ENSMUST00000032402
RefSeq Acc Id: ENSMUSP00000039744   ⟸   ENSMUST00000048252
RefSeq Acc Id: ENSMUSP00000116091   ⟸   ENSMUST00000149769
RefSeq Acc Id: ENSMUSP00000120180   ⟸   ENSMUST00000123930
RefSeq Acc Id: ENSMUSP00000117708   ⟸   ENSMUST00000136819

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P24288-F1-model_v2 AlphaFold P24288 1-386 view protein structure

Promoters
RGD ID:6838986
Promoter ID:MM_KWN:48188
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000062291
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366144,983,836 - 144,984,336 (-)MPROMDB
RGD ID:6838985
Promoter ID:MM_KWN:48191
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:ENSMUST00000087468,   OTTMUST00000062269
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366144,997,091 - 144,997,591 (-)MPROMDB
RGD ID:6838983
Promoter ID:MM_KWN:48193
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000048252,   ENSMUST00000111742
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366145,024,256 - 145,024,756 (-)MPROMDB
RGD ID:6891472
Promoter ID:EPDNEW_M9186
Type:initiation region
Name:Bcat1_1
Description:Mus musculus branched chain aminotransferase 1, cytosolic , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9187  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386145,048,767 - 145,048,827EPDNEW
RGD ID:6891474
Promoter ID:EPDNEW_M9187
Type:initiation region
Name:Bcat1_2
Description:Mus musculus branched chain aminotransferase 1, cytosolic , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9186  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386145,076,053 - 145,076,113EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104861 AgrOrtholog
Ensembl Genes ENSMUSG00000030268 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032402 ENTREZGENE
  ENSMUST00000032402.12 UniProtKB/TrEMBL
  ENSMUST00000048252.11 UniProtKB/TrEMBL
  ENSMUST00000111742 ENTREZGENE
  ENSMUST00000111742.8 UniProtKB/Swiss-Prot
  ENSMUST00000123930.8 UniProtKB/TrEMBL
  ENSMUST00000136819.3 UniProtKB/TrEMBL
  ENSMUST00000149769.6 UniProtKB/TrEMBL
  ENSMUST00000204138.3 UniProtKB/TrEMBL
Gene3D-CATH 3.20.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.470.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aminotrans_IV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotrans_IV_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotransferase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B_amino_transII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCAT-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCAT-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCAT_family UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12035 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104861 ENTREZGENE
NCBI Gene 12035 ENTREZGENE
PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE, CYTOSOLIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11825 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aminotran_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bcat1 PhenoGen
PIRSF BCAT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56752 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SV61_MOUSE UniProtKB/TrEMBL
  B2KFA8_MOUSE UniProtKB/TrEMBL
  B2KFA9_MOUSE UniProtKB/TrEMBL
  BCAT1_MOUSE UniProtKB/Swiss-Prot
  E9Q4K3_MOUSE UniProtKB/TrEMBL
  F6YUH3_MOUSE UniProtKB/TrEMBL
  P24288 ENTREZGENE
  Q3TJN1 ENTREZGENE, UniProtKB/TrEMBL
  Q3TKJ1_MOUSE UniProtKB/TrEMBL
  Q7TMT2 ENTREZGENE
  Q8CBC8 ENTREZGENE, UniProtKB/TrEMBL
  Q9CXX6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q7TMT2 UniProtKB/Swiss-Prot