PGC (progastricsin) - Rat Genome Database

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Gene: PGC (progastricsin) Homo sapiens
Analyze
Symbol: PGC
Name: progastricsin
RGD ID: 735292
HGNC Page HGNC:8890
Description: Enables aspartic-type endopeptidase activity. Involved in positive regulation of antibacterial peptide production. Located in extracellular space.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FLJ99563; gastricsin; PEPC; pepsin C; pepsinogen C; pepsinogen group II; PGII; preprogastricsin; progastricsin (pepsinogen C)
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,736,711 - 41,747,397 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,736,711 - 41,754,109 (-)EnsemblGRCh38hg38GRCh38
GRCh37641,704,449 - 41,715,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,812,430 - 41,823,099 (-)NCBINCBI36Build 36hg18NCBI36
Build 34641,812,429 - 41,823,099NCBI
Celera643,257,886 - 43,268,464 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,423,279 - 41,433,946 (-)NCBIHuRef
CHM1_1641,707,932 - 41,718,508 (-)NCBICHM1_1
T2T-CHM13v2.0641,565,267 - 41,576,000 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1280267   PMID:1906854   PMID:2515193   PMID:2567697   PMID:2612209   PMID:2909526   PMID:3305135   PMID:3335549   PMID:6794457   PMID:6816595   PMID:7714902   PMID:8125298  
PMID:8322031   PMID:8876968   PMID:9267315   PMID:9406551   PMID:9421118   PMID:9794784   PMID:11915945   PMID:12128264   PMID:12477932   PMID:12508350   PMID:12698190   PMID:12759353  
PMID:14574404   PMID:14578117   PMID:15200883   PMID:15479977   PMID:15489334   PMID:15503827   PMID:15688378   PMID:15784253   PMID:16842245   PMID:16937501   PMID:16995475   PMID:17255364  
PMID:17288837   PMID:17559360   PMID:17567994   PMID:18029348   PMID:18200011   PMID:18256027   PMID:18416347   PMID:18447628   PMID:18844222   PMID:19132389   PMID:19173902   PMID:19230047  
PMID:19624876   PMID:19731026   PMID:20379614   PMID:21303408   PMID:21873635   PMID:22066020   PMID:23047493   PMID:23117263   PMID:23178618   PMID:23311720   PMID:23326145   PMID:23376485  
PMID:23455381   PMID:24009139   PMID:24284944   PMID:24586594   PMID:24895149   PMID:25028655   PMID:25551587   PMID:25857852   PMID:26158864   PMID:26486507   PMID:27865295   PMID:28700943  
PMID:29108629   PMID:30097533   PMID:30155999   PMID:30400679   PMID:32228342   PMID:32271765   PMID:33127250   PMID:34463892   PMID:34817333   PMID:34997989   PMID:37038800  


Genomics

Comparative Map Data
PGC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,736,711 - 41,747,397 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,736,711 - 41,754,109 (-)EnsemblGRCh38hg38GRCh38
GRCh37641,704,449 - 41,715,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,812,430 - 41,823,099 (-)NCBINCBI36Build 36hg18NCBI36
Build 34641,812,429 - 41,823,099NCBI
Celera643,257,886 - 43,268,464 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,423,279 - 41,433,946 (-)NCBIHuRef
CHM1_1641,707,932 - 41,718,508 (-)NCBICHM1_1
T2T-CHM13v2.0641,565,267 - 41,576,000 (-)NCBIT2T-CHM13v2.0
Pgc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,037,767 - 48,045,403 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,037,767 - 48,045,407 (+)EnsemblGRCm39 Ensembl
GRCm381747,726,842 - 47,734,478 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,726,842 - 47,734,482 (+)EnsemblGRCm38mm10GRCm38
MGSCv371747,863,791 - 47,871,427 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,190,033 - 47,197,669 (+)NCBIMGSCv36mm8
Celera1751,163,923 - 51,171,529 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.98NCBI
Pgc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,755,002 - 20,763,220 (-)NCBIGRCr8
mRatBN7.2913,257,462 - 13,265,682 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,257,462 - 13,265,682 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,837,988 - 21,845,673 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0926,902,067 - 26,909,766 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,201,385 - 25,209,079 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,266,699 - 15,274,917 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,266,699 - 15,274,917 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,191,145 - 14,199,127 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,723,620 - 8,731,837 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.198,722,923 - 8,731,141 (-)NCBI
Celera911,009,766 - 11,018,396 (-)NCBICelera
Cytogenetic Map9q12NCBI
Pgc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,142,661 - 8,151,339 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,142,523 - 8,153,044 (-)NCBIChiLan1.0ChiLan1.0
PGC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2556,229,793 - 56,240,297 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1652,099,801 - 52,110,296 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0641,321,932 - 41,330,494 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,627,385 - 42,637,514 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,627,222 - 42,637,514 (-)Ensemblpanpan1.1panPan2
PGC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,425,137 - 10,435,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,454,837 - 10,463,787 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01210,905,543 - 10,914,475 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11210,436,269 - 10,445,194 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,519,705 - 10,528,842 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,613,396 - 10,622,545 (-)NCBIUU_Cfam_GSD_1.0
Pgc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494645,913,605 - 45,920,575 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647618,039,709 - 18,046,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,922,271 - 36,951,349 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,922,269 - 36,951,380 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,257,163 - 42,286,645 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PGC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,414,769 - 30,424,708 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,415,124 - 30,424,766 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,732,945 - 41,743,040 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pgc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,311,644 - 17,319,764 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,311,743 - 17,319,675 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PGC
24 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p21.2-21.1(chr6:37777369-45653843)x1 copy number loss See cases [RCV000052181] Chr6:37777369..45653843 [GRCh38]
Chr6:37745145..45621580 [GRCh37]
Chr6:37853123..45729558 [NCBI36]
Chr6:6p21.2-21.1		 pathogenic
GRCh38/hg38 6p21.1-12.3(chr6:41638061-46512949)x1 copy number loss See cases [RCV000052182] Chr6:41638061..46512949 [GRCh38]
Chr6:41605799..46480686 [GRCh37]
Chr6:41713777..46588645 [NCBI36]
Chr6:6p21.1-12.3		 pathogenic
NM_002630.3(PGC):c.985C>T (p.Pro329Ser) single nucleotide variant Malignant melanoma [RCV000067365] Chr6:41737759 [GRCh38]
Chr6:41705497 [GRCh37]
Chr6:41813475 [NCBI36]
Chr6:6p21.1		 not provided
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
t(6;17)(p21.1;q24.3) translocation Camptomelic dysplasia [RCV000617016] Chr6:41621953..41746502 [GRCh37]
Chr17:67666390..67762983 [GRCh37]
Chr17:17q24.3
Chr6:6p21.1		 likely pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p21.1(chr6:41701706-41708664)x1 copy number loss not provided [RCV000745663] Chr6:41701706..41708664 [GRCh37]
Chr6:6p21.1		 benign
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1		 pathogenic
NM_002630.4(PGC):c.418A>G (p.Thr140Ala) single nucleotide variant Inborn genetic diseases [RCV003295409] Chr6:41743300 [GRCh38]
Chr6:41711038 [GRCh37]
Chr6:6p21.1		 uncertain significance
NC_000006.11:g.(?_41126341)_(43737486_?)dup duplication PRPH2-Related Disorders [RCV003111022] Chr6:41126341..43737486 [GRCh37]
Chr6:6p21.1		 uncertain significance
NC_000006.11:g.(?_41126341)_(43752536_?)del deletion Peroxisome biogenesis disorder [RCV003110948] Chr6:41126341..43752536 [GRCh37]
Chr6:6p21.1		 pathogenic
NM_002630.4(PGC):c.481G>A (p.Gly161Ser) single nucleotide variant Inborn genetic diseases [RCV003261664] Chr6:41742456 [GRCh38]
Chr6:41710194 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.1070G>A (p.Gly357Asp) single nucleotide variant Inborn genetic diseases [RCV002990897] Chr6:41736949 [GRCh38]
Chr6:41704687 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.430G>T (p.Gly144Cys) single nucleotide variant Inborn genetic diseases [RCV002682753] Chr6:41743288 [GRCh38]
Chr6:41711026 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.1027T>C (p.Cys343Arg) single nucleotide variant Inborn genetic diseases [RCV002818291] Chr6:41736992 [GRCh38]
Chr6:41704730 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.547G>A (p.Ala183Thr) single nucleotide variant Inborn genetic diseases [RCV002754417] Chr6:41742390 [GRCh38]
Chr6:41710128 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.185C>T (p.Thr62Ile) single nucleotide variant Inborn genetic diseases [RCV002689110] Chr6:41744683 [GRCh38]
Chr6:41712421 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.664G>C (p.Gly222Arg) single nucleotide variant Inborn genetic diseases [RCV002861077] Chr6:41740594 [GRCh38]
Chr6:41708332 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.761T>C (p.Ile254Thr) single nucleotide variant Inborn genetic diseases [RCV002794111] Chr6:41740497 [GRCh38]
Chr6:41708235 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.1102C>T (p.Leu368Phe) single nucleotide variant Inborn genetic diseases [RCV002951479] Chr6:41736917 [GRCh38]
Chr6:41704655 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.725C>T (p.Ala242Val) single nucleotide variant Inborn genetic diseases [RCV002641802] Chr6:41740533 [GRCh38]
Chr6:41708271 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.663C>A (p.Ser221Arg) single nucleotide variant Inborn genetic diseases [RCV002763727] Chr6:41740595 [GRCh38]
Chr6:41708333 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.440C>A (p.Thr147Asn) single nucleotide variant Inborn genetic diseases [RCV002931172] Chr6:41743278 [GRCh38]
Chr6:41711016 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.565G>A (p.Val189Met) single nucleotide variant Inborn genetic diseases [RCV002985826] Chr6:41742372 [GRCh38]
Chr6:41710110 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.869G>A (p.Ser290Asn) single nucleotide variant Inborn genetic diseases [RCV002713347] Chr6:41739845 [GRCh38]
Chr6:41707583 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.500C>G (p.Pro167Arg) single nucleotide variant Inborn genetic diseases [RCV002664561] Chr6:41742437 [GRCh38]
Chr6:41710175 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.971A>G (p.Asn324Ser) single nucleotide variant Inborn genetic diseases [RCV003179144] Chr6:41737773 [GRCh38]
Chr6:41705511 [GRCh37]
Chr6:6p21.1		 likely benign
NM_002630.4(PGC):c.200C>T (p.Ala67Val) single nucleotide variant Inborn genetic diseases [RCV003184207] Chr6:41744668 [GRCh38]
Chr6:41712406 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.805G>A (p.Glu269Lys) single nucleotide variant Inborn genetic diseases [RCV003344479] Chr6:41739909 [GRCh38]
Chr6:41707647 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.521C>T (p.Ala174Val) single nucleotide variant Inborn genetic diseases [RCV003354673] Chr6:41742416 [GRCh38]
Chr6:41710154 [GRCh37]
Chr6:6p21.1		 uncertain significance
NM_002630.4(PGC):c.1057T>A (p.Ser353Thr) single nucleotide variant Inborn genetic diseases [RCV003347587] Chr6:41736962 [GRCh38]
Chr6:41704700 [GRCh37]
Chr6:6p21.1		 uncertain significance
GRCh37/hg19 6p21.31-21.1(chr6:35562152-42003452)x1 copy number loss not provided [RCV003485510] Chr6:35562152..42003452 [GRCh37]
Chr6:6p21.31-21.1		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1261
Count of miRNA genes:721
Interacting mature miRNAs:850
Transcripts:ENST00000356667, ENST00000373025, ENST00000415707, ENST00000425343
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
GDB:192406  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,705,669 - 41,706,087UniSTSGRCh37
Build 36641,813,647 - 41,814,065RGDNCBI36
Celera643,259,106 - 43,259,414RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,424,499 - 41,424,901UniSTS
ECD01525  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,715,882 - 41,716,744UniSTSGRCh37
Build 36641,823,860 - 41,824,722RGDNCBI36
Celera643,269,207 - 43,270,069RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,434,689 - 41,435,552UniSTS
ECD02272  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,709,498 - 41,710,333UniSTSGRCh37
Build 36641,817,476 - 41,818,311RGDNCBI36
Celera643,262,825 - 43,263,660RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,428,312 - 41,429,147UniSTS
ECD05018  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,711,827 - 41,712,574UniSTSGRCh37
Build 36641,819,805 - 41,820,552RGDNCBI36
Celera643,265,154 - 43,265,901RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,430,641 - 41,431,388UniSTS
ECD09010  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,714,143 - 41,714,782UniSTSGRCh37
Build 36641,822,121 - 41,822,760RGDNCBI36
Celera643,267,468 - 43,268,107RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,432,950 - 41,433,589UniSTS
ECD09614  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,714,841 - 41,715,465UniSTSGRCh37
Build 36641,822,819 - 41,823,443RGDNCBI36
Celera643,268,166 - 43,268,790RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,433,648 - 41,434,272UniSTS
ECD09819  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,704,145 - 41,704,764UniSTSGRCh37
Build 36641,812,123 - 41,812,742RGDNCBI36
Celera643,257,582 - 43,258,201RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,422,975 - 41,423,594UniSTS
ECD11633  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,705,241 - 41,705,807UniSTSGRCh37
Build 36641,813,219 - 41,813,785RGDNCBI36
Celera643,258,678 - 43,259,244RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,424,071 - 41,424,637UniSTS
ECD14089  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,708,024 - 41,708,525UniSTSGRCh37
Build 36641,816,002 - 41,816,503RGDNCBI36
Celera643,261,351 - 43,261,852RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,426,838 - 41,427,339UniSTS
ECD14438  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,708,573 - 41,709,066UniSTSGRCh37
Build 36641,816,551 - 41,817,044RGDNCBI36
Celera643,261,900 - 43,262,393RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,427,387 - 41,427,880UniSTS
ECD16156  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,710,881 - 41,711,332UniSTSGRCh37
Build 36641,818,859 - 41,819,310RGDNCBI36
Celera643,264,208 - 43,264,659RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,429,695 - 41,430,146UniSTS
ECD17491  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,707,457 - 41,707,853UniSTSGRCh37
Build 36641,815,435 - 41,815,831RGDNCBI36
Celera643,260,784 - 43,261,180RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,426,271 - 41,426,667UniSTS
ECD17562  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,706,750 - 41,707,143UniSTSGRCh37
Build 36641,814,728 - 41,815,121RGDNCBI36
Celera643,260,077 - 43,260,470RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,425,564 - 41,425,957UniSTS
ECD20883  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,711,478 - 41,711,746UniSTSGRCh37
Build 36641,819,456 - 41,819,724RGDNCBI36
Celera643,264,805 - 43,265,073RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,430,292 - 41,430,560UniSTS
ECD22876  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,712,769 - 41,712,974UniSTSGRCh37
Build 36641,820,747 - 41,820,952RGDNCBI36
Celera643,266,094 - 43,266,299RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,431,577 - 41,431,782UniSTS
REN60737  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,703,970 - 41,704,205UniSTSGRCh37
Build 36641,811,948 - 41,812,183RGDNCBI36
Celera643,257,407 - 43,257,642RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,422,800 - 41,423,035UniSTS
REN60738  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,704,198 - 41,704,455UniSTSGRCh37
Build 36641,812,176 - 41,812,433RGDNCBI36
Celera643,257,635 - 43,257,892RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,423,028 - 41,423,285UniSTS
REN60739  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,704,397 - 41,704,657UniSTSGRCh37
Build 36641,812,375 - 41,812,635RGDNCBI36
Celera643,257,834 - 43,258,094RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,423,227 - 41,423,487UniSTS
REN60740  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,704,635 - 41,704,875UniSTSGRCh37
Build 36641,812,613 - 41,812,853RGDNCBI36
Celera643,258,072 - 43,258,312RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,423,465 - 41,423,705UniSTS
REN60741  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,704,861 - 41,705,099UniSTSGRCh37
Build 36641,812,839 - 41,813,077RGDNCBI36
Celera643,258,298 - 43,258,536RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,423,691 - 41,423,929UniSTS
REN60742  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,705,060 - 41,705,317UniSTSGRCh37
Build 36641,813,038 - 41,813,295RGDNCBI36
Celera643,258,497 - 43,258,754RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,423,890 - 41,424,147UniSTS
REN60743  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,705,294 - 41,705,522UniSTSGRCh37
Build 36641,813,272 - 41,813,500RGDNCBI36
Celera643,258,731 - 43,258,959RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,424,124 - 41,424,352UniSTS
REN60744  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,705,505 - 41,705,758UniSTSGRCh37
Build 36641,813,483 - 41,813,736RGDNCBI36
Celera643,258,942 - 43,259,195RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,424,335 - 41,424,588UniSTS
REN60745  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,705,604 - 41,705,851UniSTSGRCh37
Build 36641,813,582 - 41,813,829RGDNCBI36
Celera643,259,041 - 43,259,288RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,424,434 - 41,424,681UniSTS
REN60746  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,705,828 - 41,706,081UniSTSGRCh37
Build 36641,813,806 - 41,814,059RGDNCBI36
Celera643,259,265 - 43,259,408RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,424,658 - 41,424,895UniSTS
REN60747  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,706,014 - 41,706,249UniSTSGRCh37
Build 36641,813,992 - 41,814,227RGDNCBI36
Celera643,259,341 - 43,259,576RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,424,828 - 41,425,063UniSTS
REN60748  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,706,170 - 41,706,419UniSTSGRCh37
Build 36641,814,148 - 41,814,397RGDNCBI36
Celera643,259,497 - 43,259,746RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,424,984 - 41,425,233UniSTS
REN60749  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,706,585 - 41,706,812UniSTSGRCh37
Build 36641,814,563 - 41,814,790RGDNCBI36
Celera643,259,912 - 43,260,139RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,425,399 - 41,425,626UniSTS
REN60750  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,706,782 - 41,707,035UniSTSGRCh37
Build 36641,814,760 - 41,815,013RGDNCBI36
Celera643,260,109 - 43,260,362RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,425,596 - 41,425,849UniSTS
REN60751  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,706,978 - 41,707,226UniSTSGRCh37
Build 36641,814,956 - 41,815,204RGDNCBI36
Celera643,260,305 - 43,260,553RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,425,792 - 41,426,040UniSTS
REN60752  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,707,458 - 41,707,696UniSTSGRCh37
Build 36641,815,436 - 41,815,674RGDNCBI36
Celera643,260,785 - 43,261,023RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,426,272 - 41,426,510UniSTS
REN60753  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,707,679 - 41,707,917UniSTSGRCh37
Build 36641,815,657 - 41,815,895RGDNCBI36
Celera643,261,006 - 43,261,244RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,426,493 - 41,426,731UniSTS
REN60754  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,707,880 - 41,708,114UniSTSGRCh37
Build 36641,815,858 - 41,816,092RGDNCBI36
Celera643,261,207 - 43,261,441RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,426,694 - 41,426,928UniSTS
REN60755  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,708,082 - 41,708,312UniSTSGRCh37
Build 36641,816,060 - 41,816,290RGDNCBI36
Celera643,261,409 - 43,261,639RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,426,896 - 41,427,126UniSTS
REN60756  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,708,289 - 41,708,650UniSTSGRCh37
GRCh37641,708,289 - 41,708,540UniSTSGRCh37
Build 36641,816,267 - 41,816,518RGDNCBI36
Celera643,261,616 - 43,261,867RGD
Celera643,261,616 - 43,261,977UniSTS
Cytogenetic Map6p21.1UniSTS
HuRef641,427,103 - 41,427,354UniSTS
HuRef641,427,103 - 41,427,464UniSTS
REN60757  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,708,523 - 41,708,791UniSTSGRCh37
Build 36641,816,501 - 41,816,769RGDNCBI36
Celera643,261,850 - 43,262,118RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,427,337 - 41,427,605UniSTS
REN60758  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,708,770 - 41,709,018UniSTSGRCh37
Build 36641,816,748 - 41,816,996RGDNCBI36
Celera643,262,097 - 43,262,345RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,427,584 - 41,427,832UniSTS
REN60759  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,708,857 - 41,709,105UniSTSGRCh37
Build 36641,816,835 - 41,817,083RGDNCBI36
Celera643,262,184 - 43,262,432RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,427,671 - 41,427,919UniSTS
REN60760  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,709,047 - 41,709,306UniSTSGRCh37
Build 36641,817,025 - 41,817,284RGDNCBI36
Celera643,262,374 - 43,262,633RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,427,861 - 41,428,120UniSTS
REN60761  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,709,283 - 41,709,533UniSTSGRCh37
Build 36641,817,261 - 41,817,511RGDNCBI36
Celera643,262,610 - 43,262,860RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,428,097 - 41,428,347UniSTS
REN60762  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,709,507 - 41,709,743UniSTSGRCh37
Build 36641,817,485 - 41,817,721RGDNCBI36
Celera643,262,834 - 43,263,070RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,428,321 - 41,428,557UniSTS
REN60763  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,709,718 - 41,709,965UniSTSGRCh37
Build 36641,817,696 - 41,817,943RGDNCBI36
Celera643,263,045 - 43,263,292RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,428,532 - 41,428,779UniSTS
REN60764  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,709,939 - 41,710,179UniSTSGRCh37
Build 36641,817,917 - 41,818,157RGDNCBI36
Celera643,263,266 - 43,263,506RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,428,753 - 41,428,993UniSTS
REN60765  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,710,102 - 41,710,330UniSTSGRCh37
Build 36641,818,080 - 41,818,308RGDNCBI36
Celera643,263,429 - 43,263,657RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,428,916 - 41,429,144UniSTS
REN60766  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,710,220 - 41,710,464UniSTSGRCh37
Build 36641,818,198 - 41,818,442RGDNCBI36
Celera643,263,547 - 43,263,791RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,429,034 - 41,429,278UniSTS
REN60767  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,710,443 - 41,710,685UniSTSGRCh37
Build 36641,818,421 - 41,818,663RGDNCBI36
Celera643,263,770 - 43,264,012RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,429,257 - 41,429,499UniSTS
REN60768  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,710,664 - 41,710,927UniSTSGRCh37
Build 36641,818,642 - 41,818,905RGDNCBI36
Celera643,263,991 - 43,264,254RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,429,478 - 41,429,741UniSTS
REN60769  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,710,904 - 41,711,155UniSTSGRCh37
Build 36641,818,882 - 41,819,133RGDNCBI36
Celera643,264,231 - 43,264,482RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,429,718 - 41,429,969UniSTS
REN60770  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,711,137 - 41,711,390UniSTSGRCh37
Build 36641,819,115 - 41,819,368RGDNCBI36
Celera643,264,464 - 43,264,717RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,429,951 - 41,430,204UniSTS
REN60771  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,711,367 - 41,711,616UniSTSGRCh37
Build 36641,819,345 - 41,819,594RGDNCBI36
Celera643,264,694 - 43,264,943RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,430,181 - 41,430,430UniSTS
REN60772  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,711,594 - 41,711,837UniSTSGRCh37
Build 36641,819,572 - 41,819,815RGDNCBI36
Celera643,264,921 - 43,265,164RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,430,408 - 41,430,651UniSTS
REN60773  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,711,814 - 41,712,067UniSTSGRCh37
Build 36641,819,792 - 41,820,045RGDNCBI36
Celera643,265,141 - 43,265,394RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,430,628 - 41,430,881UniSTS
REN60774  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,712,046 - 41,712,291UniSTSGRCh37
Build 36641,820,024 - 41,820,269RGDNCBI36
Celera643,265,373 - 43,265,618RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,430,860 - 41,431,105UniSTS
REN60775  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,712,265 - 41,712,526UniSTSGRCh37
Build 36641,820,243 - 41,820,504RGDNCBI36
Celera643,265,592 - 43,265,853RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,431,079 - 41,431,340UniSTS
REN60776  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,712,456 - 41,712,712UniSTSGRCh37
Build 36641,820,434 - 41,820,690RGDNCBI36
Celera643,265,783 - 43,266,039RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,431,270 - 41,431,526UniSTS
REN60777  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,712,689 - 41,712,936UniSTSGRCh37
Build 36641,820,667 - 41,820,914RGDNCBI36
Celera643,266,016 - 43,266,261RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,431,503 - 41,431,744UniSTS
REN60778  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,712,831 - 41,713,088UniSTSGRCh37
Build 36641,820,809 - 41,821,066RGDNCBI36
Celera643,266,156 - 43,266,413RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,431,639 - 41,431,895UniSTS
REN60779  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,713,879 - 41,714,110UniSTSGRCh37
Build 36641,821,857 - 41,822,088RGDNCBI36
Celera643,267,204 - 43,267,435RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,432,686 - 41,432,917UniSTS
REN60780  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,714,099 - 41,714,361UniSTSGRCh37
Build 36641,822,077 - 41,822,339RGDNCBI36
Celera643,267,424 - 43,267,686RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,432,906 - 41,433,168UniSTS
REN60781  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,714,343 - 41,714,599UniSTSGRCh37
Build 36641,822,321 - 41,822,577RGDNCBI36
Celera643,267,668 - 43,267,924RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,433,150 - 41,433,406UniSTS
REN60782  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,714,586 - 41,714,833UniSTSGRCh37
Build 36641,822,564 - 41,822,811RGDNCBI36
Celera643,267,911 - 43,268,158RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,433,393 - 41,433,640UniSTS
REN60783  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,714,807 - 41,715,072UniSTSGRCh37
Build 36641,822,785 - 41,823,050RGDNCBI36
Celera643,268,132 - 43,268,397RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,433,614 - 41,433,879UniSTS
REN60784  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,715,051 - 41,715,308UniSTSGRCh37
Build 36641,823,029 - 41,823,286RGDNCBI36
Celera643,268,376 - 43,268,633RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,433,858 - 41,434,115UniSTS
REN60785  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,715,280 - 41,715,514UniSTSGRCh37
Build 36641,823,258 - 41,823,492RGDNCBI36
Celera643,268,605 - 43,268,839RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,434,087 - 41,434,321UniSTS
REN60786  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,715,501 - 41,715,746UniSTSGRCh37
Build 36641,823,479 - 41,823,724RGDNCBI36
Celera643,268,826 - 43,269,071RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,434,308 - 41,434,553UniSTS
REN60787  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,715,743 - 41,715,990UniSTSGRCh37
Build 36641,823,721 - 41,823,968RGDNCBI36
Celera643,269,068 - 43,269,315RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,434,550 - 41,434,797UniSTS
REN60788  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,715,987 - 41,716,242UniSTSGRCh37
Build 36641,823,965 - 41,824,220RGDNCBI36
Celera643,269,312 - 43,269,567RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,434,794 - 41,435,049UniSTS
REN60789  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,716,218 - 41,716,489UniSTSGRCh37
Build 36641,824,196 - 41,824,467RGDNCBI36
Celera643,269,543 - 43,269,814RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,435,025 - 41,435,297UniSTS
REN60790  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,716,472 - 41,716,738UniSTSGRCh37
Build 36641,824,450 - 41,824,716RGDNCBI36
Celera643,269,797 - 43,270,063RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,435,280 - 41,435,546UniSTS
REN60791  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,716,563 - 41,716,799UniSTSGRCh37
Build 36641,824,541 - 41,824,777RGDNCBI36
Celera643,269,888 - 43,270,124RGD
Cytogenetic Map6p21.1UniSTS
HuRef641,435,371 - 41,435,607UniSTS
PGC  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,712,442 - 41,712,551UniSTSGRCh37
Build 36641,820,420 - 41,820,529RGDNCBI36
Celera643,265,769 - 43,265,878RGD
HuRef641,431,256 - 41,431,365UniSTS
RH46782  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,704,525 - 41,704,710UniSTSGRCh37
Build 36641,812,503 - 41,812,688RGDNCBI36
Celera643,257,962 - 43,258,147RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,423,355 - 41,423,540UniSTS
GeneMap99-GB4 RH Map6152.35UniSTS
NCBI RH Map6633.7UniSTS
SHGC-35331  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,704,467 - 41,704,592UniSTSGRCh37
Build 36641,812,445 - 41,812,570RGDNCBI36
Celera643,257,904 - 43,258,029RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef641,423,297 - 41,423,422UniSTS
Stanford-G3 RH Map62283.0UniSTS
GeneMap99-GB4 RH Map6152.45UniSTS
Whitehead-RH Map6246.9UniSTS
GeneMap99-G3 RH Map62415.0UniSTS
stSG634977  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,704,420 - 41,705,511UniSTSGRCh37
Build 36641,812,398 - 41,813,489RGDNCBI36
Celera643,257,857 - 43,258,948RGD
HuRef641,423,250 - 41,424,341UniSTS
stSG634979  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,706,781 - 41,708,060UniSTSGRCh37
Build 36641,814,759 - 41,816,038RGDNCBI36
Celera643,260,108 - 43,261,387RGD
HuRef641,425,595 - 41,426,874UniSTS
stSG634981  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,708,243 - 41,709,526UniSTSGRCh37
Build 36641,816,221 - 41,817,504RGDNCBI36
Celera643,261,570 - 43,262,853RGD
HuRef641,427,057 - 41,428,340UniSTS
stSG634982  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,709,507 - 41,710,940UniSTSGRCh37
Build 36641,817,485 - 41,818,918RGDNCBI36
Celera643,262,834 - 43,264,267RGD
HuRef641,428,321 - 41,429,754UniSTS
stSG634983  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,710,921 - 41,712,374UniSTSGRCh37
Build 36641,818,899 - 41,820,352RGDNCBI36
Celera643,264,248 - 43,265,701RGD
HuRef641,429,735 - 41,431,188UniSTS
stSG634984  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,711,961 - 41,712,974UniSTSGRCh37
Build 36641,819,939 - 41,820,952RGDNCBI36
Celera643,265,288 - 43,266,299RGD
HuRef641,430,775 - 41,431,782UniSTS
stSG634985  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,712,955 - 41,714,244UniSTSGRCh37
Build 36641,820,933 - 41,822,222RGDNCBI36
Celera643,266,280 - 43,267,569RGD
HuRef641,431,763 - 41,433,051UniSTS
stSG634986  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,714,225 - 41,715,349UniSTSGRCh37
Build 36641,822,203 - 41,823,327RGDNCBI36
Celera643,267,550 - 43,268,674RGD
HuRef641,433,032 - 41,434,156UniSTS
stSG634987  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37641,715,331 - 41,716,428UniSTSGRCh37
Build 36641,823,309 - 41,824,406RGDNCBI36
Celera643,268,656 - 43,269,753RGD
HuRef641,434,138 - 41,435,236UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 290 1 1 1 3 8 99 1
Medium 154 80 108 39 31 31 138 53 114 4 225 452 9 37 88 1
Low 1260 1368 934 301 636 203 1836 1053 1789 78 826 519 101 586 1243 3 1
Below cutoff 625 1236 426 145 599 102 1951 852 1525 175 243 293 45 485 1257 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000356667   ⟹   ENSP00000349094
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl641,740,602 - 41,747,395 (-)Ensembl
RefSeq Acc Id: ENST00000373025   ⟹   ENSP00000362116
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl641,736,711 - 41,747,397 (-)Ensembl
RefSeq Acc Id: ENST00000415707   ⟹   ENSP00000399429
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl641,744,479 - 41,754,109 (-)Ensembl
RefSeq Acc Id: ENST00000425343   ⟹   ENSP00000405094
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl641,740,838 - 41,747,401 (-)Ensembl
RefSeq Acc Id: NM_001166424   ⟹   NP_001159896
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38641,740,838 - 41,747,397 (-)NCBI
GRCh37641,704,449 - 41,715,139 (-)ENTREZGENE
HuRef641,423,279 - 41,433,946 (-)ENTREZGENE
CHM1_1641,711,949 - 41,718,508 (-)NCBI
T2T-CHM13v2.0641,569,446 - 41,576,000 (-)NCBI
Sequence:
RefSeq Acc Id: NM_002630   ⟹   NP_002621
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38641,736,711 - 41,747,397 (-)NCBI
GRCh37641,704,449 - 41,715,139 (-)ENTREZGENE
Build 36641,812,430 - 41,823,099 (-)NCBI Archive
HuRef641,423,279 - 41,433,946 (-)ENTREZGENE
CHM1_1641,707,932 - 41,718,508 (-)NCBI
T2T-CHM13v2.0641,565,267 - 41,576,000 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_002621   ⟸   NM_002630
- Peptide Label: isoform 1 preproprotein
- UniProtKB: Q5T3D7 (UniProtKB/Swiss-Prot),   B4DVZ3 (UniProtKB/Swiss-Prot),   Q5T3D8 (UniProtKB/Swiss-Prot),   P20142 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001159896   ⟸   NM_001166424
- Peptide Label: isoform 2 preproprotein
- UniProtKB: P20142 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000405094   ⟸   ENST00000425343
RefSeq Acc Id: ENSP00000362116   ⟸   ENST00000373025
RefSeq Acc Id: ENSP00000399429   ⟸   ENST00000415707
RefSeq Acc Id: ENSP00000349094   ⟸   ENST00000356667
Protein Domains
Aspartic peptidase N-terminal   Peptidase A1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P20142-F1-model_v2 AlphaFold P20142 1-388 view protein structure

Promoters
RGD ID:7208011
Promoter ID:EPDNEW_H9752
Type:multiple initiation site
Name:PGC_1
Description:progastricsin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38641,747,397 - 41,747,457EPDNEW
RGD ID:6849886
Promoter ID:EP28005
Type:single initiation site
Name:HS_PGC
Description:Pepsinogen C.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Tissues & Cell Lines:stomach, gastric glands, chief cells
Experiment Methods:Nuclease protection with homologous sequence ladder
Position:
Human AssemblyChrPosition (strand)Source
Build 36641,823,114 - 41,823,174EPD

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:8890 AgrOrtholog
COSMIC PGC COSMIC
Ensembl Genes ENSG00000096088 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000356667.8 UniProtKB/TrEMBL
  ENST00000373025 ENTREZGENE
  ENST00000373025.7 UniProtKB/Swiss-Prot
  ENST00000415707.1 UniProtKB/TrEMBL
  ENST00000425343 ENTREZGENE
  ENST00000425343.6 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.70.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.140.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000096088 GTEx
HGNC ID HGNC:8890 ENTREZGENE
Human Proteome Map PGC Human Proteome Map
InterPro Aspartic_peptidase_A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aspartic_peptidase_AS UniProtKB/Swiss-Prot
  Aspartic_peptidase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_aspartic_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:5225 UniProtKB/Swiss-Prot
NCBI Gene 5225 ENTREZGENE
OMIM 169740 OMIM
PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GASTRICSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam A1_Propeptide UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Asp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA33228 PharmGKB
PRINTS PEPSIN UniProtKB/Swiss-Prot
PROSITE ASP_PROTEASE UniProtKB/Swiss-Prot
  PEPTIDASE_A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50630 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A3L9_HUMAN UniProtKB/TrEMBL
  B4DVZ3 ENTREZGENE
  P20142 ENTREZGENE, UniProtKB/Swiss-Prot
  Q4VXA6_HUMAN UniProtKB/TrEMBL
  Q5T3D7 ENTREZGENE
  Q5T3D8 ENTREZGENE
UniProt Secondary B4DVZ3 UniProtKB/Swiss-Prot
  Q5T3D7 UniProtKB/Swiss-Prot
  Q5T3D8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-07 PGC  progastricsin    progastricsin (pepsinogen C)  Symbol and/or name change 5135510 APPROVED