Sgsm3 (small G protein signaling modulator 3)

Gene: Sgsm3 (small G protein signaling modulator 3) Rattus norvegicus

Analyze

Symbol:

Sgsm3

Name:

small G protein signaling modulator 3

RGD ID:

735113

Description:

Predicted to enable GTPase activator activity and small GTPase binding activity. Predicted to be involved in several processes, including Rap protein signal transduction; plasma membrane to endosome transport; and regulation of Rab protein signal transduction. Predicted to be located in cytosol and gap junction. Orthologous to human SGSM3 (small G protein signaling modulator 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bdif-1; hypothetical protein; RUN and TBC1 domain containing 3; RUN and TBC1 domain-containing protein 3; Rutbc3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SGSM3 (small G protein signaling modulator 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Sgsm3 (small G protein signaling modulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sgsm3 (small G protein signaling modulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SGSM3 (small G protein signaling modulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SGSM3 (small G protein signaling modulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sgsm3 (small G protein signaling modulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SGSM3 (small G protein signaling modulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SGSM3 (small G protein signaling modulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sgsm3 (small G protein signaling modulator 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Sgsm3 (small G protein signaling modulator 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SGSM3 (small G protein signaling modulator 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sgsm3 (small G protein signaling modulator 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12241	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tbc-18	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sgsm3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	114,394,724 - 114,424,285 (+)	NCBI		GRCr8
mRatBN7.2	7	112,514,453 - 112,544,109 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	112,514,630 - 112,544,108 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	114,277,198 - 114,306,669 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	116,500,742 - 116,530,214 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	116,470,115 - 116,499,587 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	122,203,498 - 122,232,993 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	122,203,532 - 122,232,991 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	122,187,850 - 122,217,330 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	119,259,355 - 119,306,023 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	119,293,617 - 119,340,248 (+)	NCBI
Celera	7	108,838,288 - 108,866,794 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenylosuccinase lyase deficiency (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

5-aza-2'-deoxycytidine (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

buta-1,3-diene (ISO)

caffeine (ISO)

carbamazepine (ISO)

carnosic acid (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

D-mannitol (ISO)

diazinon (EXP)

disodium selenite (ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

ethanol (ISO)

folic acid (ISO)

Licochalcone B (ISO)

lidocaine (EXP)

maneb (ISO)

nickel dichloride (EXP)

ozone (ISO)

paracetamol (EXP)

paraquat (ISO)

PCB138 (ISO)

phenylmercury acetate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thapsigargin (EXP)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

plasma membrane to endosome transport (IEA,ISO)

positive regulation of protein catabolic process (IEA,ISO)

Rap protein signal transduction (IEA,ISO,ISS)

regulation of cell cycle (IEA)

regulation of cilium assembly (ISO)

regulation of Rab protein signal transduction (IEA,ISO,ISS)

Cellular Component

cytosol (IEA,ISO)

gap junction (IEA,ISO)

Molecular Function

GTPase activator activity (IBA,IEA,ISO)

protein binding (ISO)

small GTPase binding (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:15709751	PMID:17509819	PMID:17562788	PMID:17646400	PMID:21453730	PMID:28716730

Genomics

Comparative Map Data

Sgsm3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	114,394,724 - 114,424,285 (+)	NCBI		GRCr8
mRatBN7.2	7	112,514,453 - 112,544,109 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	112,514,630 - 112,544,108 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	114,277,198 - 114,306,669 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	116,500,742 - 116,530,214 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	116,470,115 - 116,499,587 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	122,203,498 - 122,232,993 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	122,203,532 - 122,232,991 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	122,187,850 - 122,217,330 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	119,259,355 - 119,306,023 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	119,293,617 - 119,340,248 (+)	NCBI
Celera	7	108,838,288 - 108,866,794 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

SGSM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	40,370,594 - 40,410,289 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	40,370,591 - 40,410,289 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	40,766,598 - 40,806,293 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	39,096,541 - 39,136,239 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	39,091,094 - 39,130,793	NCBI
Celera	22	24,568,657 - 24,608,354 (+)	NCBI		Celera
Cytogenetic Map	22	q13.1	NCBI
HuRef	22	23,729,704 - 23,769,396 (+)	NCBI		HuRef
CHM1_1	22	40,725,487 - 40,765,196 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	40,842,001 - 40,880,672 (+)	NCBI		T2T-CHM13v2.0

Sgsm3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	80,861,966 - 80,896,491 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	80,861,966 - 80,896,491 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	80,977,762 - 81,012,290 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	80,977,765 - 81,012,290 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	80,808,195 - 80,842,720 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	80,805,060 - 80,839,326 (+)	NCBI		MGSCv36	mm8
Celera	15	83,098,059 - 83,132,412 (+)	NCBI		Celera
Cytogenetic Map	15	E1	NCBI
cM Map	15	37.96	NCBI

Sgsm3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	26,094,146 - 26,142,219 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	26,094,170 - 26,139,062 (+)	NCBI	ChiLan1.0	ChiLan1.0

SGSM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	50,216,004 - 50,247,264 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	52,910,482 - 52,950,196 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	21,275,464 - 21,314,652 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	39,094,271 - 39,411,884 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	39,402,336 - 39,411,884 (+)	Ensembl	panpan1.1		panPan2

SGSM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	24,759,714 - 24,803,333 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	24,760,162 - 24,769,478 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	24,694,730 - 24,738,134 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	25,510,076 - 25,553,515 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	25,509,954 - 25,553,470 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	25,222,399 - 25,265,776 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	25,544,643 - 25,588,214 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	25,718,961 - 25,762,365 (-)	NCBI		UU_Cfam_GSD_1.0

Sgsm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	8,371,633 - 8,405,658 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	1,385,347 - 1,416,124 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	1,380,322 - 1,416,060 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SGSM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	7,968,097 - 8,017,768 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	7,976,015 - 8,017,782 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	5,208,551 - 5,250,235 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SGSM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	22,943,787 - 22,979,899 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	22,970,595 - 22,982,856 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	102,610,702 - 102,646,800 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sgsm3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	8,050,342 - 8,093,105 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	8,050,345 - 8,093,119 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Sgsm3
71 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	100
Count of miRNA genes:	87
Interacting mature miRNAs:	92
Transcripts:	ENSRNOT00000025382
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	41333674	119109060	Rat
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	44421311	118198041	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	68938720	113886318	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	68938720	113886318	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	68938720	113886318	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	69736226	117455174	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	69736356	112729554	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	75918751	120918751	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	80221299	124373579	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	80221299	125221299	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	81737938	126737938	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	83153392	128153392	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
71114	Niddm14	Non-insulin dependent diabetes mellitus QTL 14	4.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	84257275	129257275	Rat
2298475	Eau6	Experimental allergic uveoretinitis QTL 6		0.0029	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	7	84257275	129257275	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	91412594	129807172	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	94811085	116738842	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	94811326	116294265	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	103146217	116738842	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat

Markers in Region

D7Got104

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	112,522,128 - 112,522,356 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	122,211,015 - 122,211,240	NCBI	Rnor6.0
Rnor_5.0	7	122,195,352 - 122,195,577	UniSTS	Rnor5.0
RGSC_v3.4	7	119,284,044 - 119,284,270	RGD	RGSC3.4
RGSC_v3.4	7	119,284,045 - 119,284,270	UniSTS	RGSC3.4
RGSC_v3.1	7	119,318,275 - 119,318,500	RGD
Celera	7	108,845,432 - 108,845,657	UniSTS
RH 3.4 Map	7	876.8	RGD
RH 3.4 Map	7	876.8	UniSTS
Cytogenetic Map	7	q34	UniSTS

AI428557

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	112,543,635 - 112,543,805 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	122,232,520 - 122,232,689	NCBI	Rnor6.0
Rnor_5.0	7	122,216,857 - 122,217,026	UniSTS	Rnor5.0
RGSC_v3.4	7	119,305,550 - 119,305,719	UniSTS	RGSC3.4
Celera	7	108,866,321 - 108,866,490	UniSTS
Cytogenetic Map	7	q34	UniSTS

AW821984

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	112,544,379 - 112,544,531 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	122,233,264 - 122,233,415	NCBI	Rnor6.0
Rnor_5.0	7	122,217,601 - 122,217,752	UniSTS	Rnor5.0
RGSC_v3.4	7	119,306,294 - 119,306,445	UniSTS	RGSC3.4
Celera	7	108,867,065 - 108,867,216	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH131243

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	112,543,882 - 112,544,063 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	122,232,767 - 122,232,947	NCBI	Rnor6.0
Rnor_5.0	7	122,217,104 - 122,217,284	UniSTS	Rnor5.0
RGSC_v3.4	7	119,305,797 - 119,305,977	UniSTS	RGSC3.4
Celera	7	108,866,568 - 108,866,748	UniSTS
RH 3.4 Map	7	876.7	UniSTS
Cytogenetic Map	7	q34	UniSTS

Sgsm3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	112,540,425 - 112,541,293 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	122,229,310 - 122,230,177	NCBI	Rnor6.0
Rnor_5.0	7	122,213,647 - 122,214,514	UniSTS	Rnor5.0
RGSC_v3.4	7	119,302,340 - 119,303,207	UniSTS	RGSC3.4
Celera	7	108,863,111 - 108,863,978	UniSTS
Cytogenetic Map	7	q34	UniSTS

Sgsm3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	112,540,425 - 112,541,480 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	122,229,310 - 122,230,364	NCBI	Rnor6.0
Rnor_5.0	7	122,213,647 - 122,214,701	UniSTS	Rnor5.0
RGSC_v3.4	7	119,302,340 - 119,303,394	UniSTS	RGSC3.4
Celera	7	108,863,111 - 108,864,165	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	6	7	2		2	5	8	70	32	36	11	5
Low		37	50	39	19	39	3	3	4	3	5		3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_198787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB091009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC062060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM385615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB581701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000025382 ⟹ ENSRNOP00000025381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	112,514,643 - 112,544,107 (+)	Ensembl
Rnor_6.0 Ensembl	7	122,203,532 - 122,232,991 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098829 ⟹ ENSRNOP00000079207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	112,514,634 - 112,536,313 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101805 ⟹ ENSRNOP00000080335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	112,514,630 - 112,544,108 (+)	Ensembl

RefSeq Acc Id:

NM_198787 ⟹ NP_942082

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	114,394,822 - 114,424,285 (+)	NCBI
mRatBN7.2	7	112,514,643 - 112,544,109 (+)	NCBI
Rnor_6.0	7	122,203,532 - 122,232,993 (+)	NCBI
Rnor_5.0	7	122,187,850 - 122,217,330 (+)	NCBI
RGSC_v3.4	7	119,259,355 - 119,306,023 (+)	RGD
Celera	7	108,838,288 - 108,866,794 (+)	RGD

Sequence:

show sequence

TAGGAGCCAGCCGCTAGCCGGAGCAGCTGAGGTGCTGAGGTGGCCCTGACACAGGGCAGATGAA
GCCTGAGGAGCCTCATGACAGTCAGAGATGCCAATGATGACCATCTATGCCTAGATCTATGAAG
AGCTGCCATCGTCCACAGCACATGATGTCAGGAAACCACACGCCTTCTGCTAGTGGCCCTTTCT
CTGCCCTGACTCCAAGCATATGGCCCCAGGAGATCCTGGCAAAATCCTCACAGAAGGAAGACTC
CTCAGAGCCAGAGATCTGCTATGATGAGTTTGGTTTCCGAGTGGACAAGGAAGGTTCTGAGCCT
GGATGCAGCCAGATGGCAGGCACACCCCTGGTAGAGGATCCCCCTCAGAGGCTACGTTGGCAGG
CTCACCTGGAGTTTACCCACAACCATGATGTTGGGGATCTCACCTGGGACAAGATTGCAGTCTC
CCTCCCCCGCTCTGAGAAACTCCGTTCCCTAGTGCTGGCTGGCATCCCGCATGGCATGAGGCCA
CAGTTGTGGATGCGGCTCTCTGGGGCACTGCAGAAGAAGAAGAACTCTGAGTTGTCCTACCGTG
AGATTGTAAAGAACAGCTCCAATGATGAGACCATCGCTGCCAAACAGATCGAAAAGGACCTGCT
CCGTACCATGCCCAGCAACGCCTGCTTTGCCAATGTGAACAGCATCGGAGTGCCCCGCCTGCGC
AGAGTCCTTCGAGCACTGGCCTGGCTCTATCCAGAGATTGGCTACTGCCAGGGCACAGGCATGG
TGGCTGCCTGTCTCCTGCTGTTCCTGGAGGAGGAGGACGCCTTCTGGATGATGTGTGCCATTAT
TGAGGACCTGCTGCCTGCCTCCTACTTCAGCACCACCCTGCTAGGTGTCCAGACTGACCAGCGG
GTCCTGCGCCACCTGATTGTCCAGTACCTGCCTCGCTTAGACAAGCTGTTGCAGGAGCATGACA
TTGAGCTGTCTCTGATCACGCTGCACTGGTTCCTCACGGCCTTCGCCAGCGTGGTGCACATCAG
ACTGCTGCTGCGCATCTGGGACCTGTTCTTCTACGAGGGCTCCCTGGTGTTGTTCCAGACTACG
CTGGGCATGCTGCGCCTTAAGGAGGAAGAGCTGATACAGTCGGAGAACTCAGCGTCCATCTTCA
ACACGCTGTCGGACATCCCTGCCCAGATGGATGATGCAGAGCTGCTGCTGGGGGAGGCCATGCA
GCTGGCTGGCTCCCTCACTGATGTGGCTGTGGAGACCCAGCGCCGCAAGCATCTGGCCTACCTC
ATTGCAGACCAAGGCCAGACCCTGGGGACGAGCACCACCACCAGCCTCTCTCAGGTTGTACGGC
GAAGGACCCAGCGGAGAAAGTCTGGCATCACCTCCCTGCTCTTTGGAGAGGATGACCTAGAAGC
TCTCAAGGCAAAGAACATCAAACAAACAGAGCTGGTAGCTGACCTTCGTGAAGCCATTTTACGT
GTGGCACGCCACTTCCAGTGCACAGACCCCAAGAACTGTAGTGTGGAGCTGACGCCAGACTACA
GCATGGAGAGCCACCAGCGGGACCATGAGAACTATGTGGCATGCTTACGCAGCCACCGGCGCCG
GGCCAAGGCCCTGCTGGACTTTGAGCGTCATGACGATGACGAGCTAGGCTTCCGCAAAAATGAC
ATCATCACGATCATTTCTCAGAAGGATGAGCACTGCTGGGTGGGTGAGCTGAACGGCCTGAGAG
GCTGGTTTCCAGCCAAGTTTGTGGAGGTCCTGGATGAGCGAAGTAAAGAGTACTCCATTGCGGG
GGATGACTCTGTGACTGAAGGAGTAACAGACCTCGTGCGAGGGACCCTCTGCCCAGCCCTCAAG
GCCCTATTTGAACATGGATTGAAGAAGCCATCCTTGCTTGGGGGTGCTTGCCACCCCTGGCTGT
TTATTGAGGAGGCAGCAGGCCGGGAAGTCGAGAGAGACTTTGATTCTGTGTACTCCCGCCTGGT
GCTCTGTAAGACCTACAGGTTGGATGAAGACGGCAAAGTCCTGACCCCTGAAGAGCTGCTGTAC
CGGGCCGTGCAGTCTGTGAATGTGACCCATGATGCAGCACACGCACAGATGGATGTCAAACTCC
GTTCACTTATCTGTGTGGGGCTCAATGAGCAGGTCCTACACCTGTGGCTAGAGGTACTCTGCTC
CAGCCTGCCCACCGTGGAGAAGTGGTACCAGCCCTGGTCCTTCCTGCGCAGCCCTGGCTGGGTC
CAGATCAAGTGTGAGCTCCGTGTCCTCTGCTGCTTTGCCTTCAGCCTCTCCCAGGACTGGGAGC
TCCCCGCTAAGAGAGAGGAGGAGAAGCAGCCACTGAAGGAGGGTGTTCAGGACATGCTGGTGAA
GCACCATCTCTTCAGCTGGGACATAGATGGATGATGCTCCTTCTAGCTGCTCTGTGGCTCCCAG
GCCTACCCATCATAGACTGCCTGGCAGGCTCCTCCCTTCCAGAGAAAGAAGGCAGAGCCCTGGC
CAGCCTCAGGCCTTCCTCCTCAAGCTAGGAGGTTCAGGGAAAGACACCCCAGAGCTTACTCAGG
ACCCATGATCAATGTCTGGGCCTCCCCTGTTGAGGCTCCCGCAGTTGGCAAAAGCATATACTGG
TGGCCAGGTCAGCTGCTCTCCTTAATATGGTCCTGGGGGTGTCCTGCCAGAGTCCTTAAGGAAG
CCCTGGGTGCCAGCCATATGGTGTATGAACCAAAAACCACGTGAAGCAGCAGAAAGCCACACAC
ACCTATGCTGCTCAGGAAGTGCGTAGGCTAACAGCAGACAAAGGCCCCTCGACCTTTACTGTAA
ATAAATCTTTTTGTGAGAGCAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242096 ⟹ XP_006242158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	114,394,798 - 114,424,281 (+)	NCBI
mRatBN7.2	7	112,514,453 - 112,544,109 (+)	NCBI
Rnor_6.0	7	122,203,498 - 122,232,993 (+)	NCBI
Rnor_5.0	7	122,187,850 - 122,217,330 (+)	NCBI

Sequence:

show sequence

CCCGCGCGTGCGCAGTAGGGCAGCTGTCGCTGATTAGGAGCCAGCCGCTAGCCGGAGCAGCTGA
GGTGCTGAGGTGGCCCTGACACAGATGAAGCCTGAGGAGCCTCATGACAGTCAGAGATGCCAAT
GATGACCATCTATGCCTAGATCTATGAAGAGCTGCCATCGTCCACAGCACATGATGTCAGGAAA
CCACACGCCTTCTGCTAGTGGCCCTTTCTCTGCCCTGACTCCAAGCATATGGCCCCAGGAGATC
CTGGCAAAATCCTCACAGAAGGAAGACTCCTCAGAGCCAGAGATCTGCTATGATGAGTTTGGTT
TCCGAGTGGACAAGGAAGGTTCTGAGCCTGGATGCAGCCAGATGGCAGGCACACCCCTGGTAGA
GGATCCCCCTCAGAGGCTACGTTGGCAGGCTCACCTGGAGTTTACCCACAACCATGATGTTGGG
GATCTCACCTGGGACAAGATTGCAGTCTCCCTCCCCCGCTCTGAGAAACTCCGTTCCCTAGTGC
TGGCTGGCATCCCGCATGGCATGAGGCCACAGTTGTGGATGCGGCTCTCTGGGGCACTGCAGAA
GAAGAAGAACTCTGAGTTGTCCTACCGTGAGATTGTAAAGAACAGCTCCAATGATGAGACCATC
GCTGCCAAACAGATCGAAAAGGACCTGCTCCGTACCATGCCCAGCAACGCCTGCTTTGCCAATG
TGAACAGCATCGGAGTGCCCCGCCTGCGCAGAGTCCTTCGAGCACTGGCCTGGCTCTATCCAGA
GATTGGCTACTGCCAGGGCACAGGCATGGTGGCTGCCTGTCTCCTGCTGTTCCTGGAGGAGGAG
GACGCCTTCTGGATGATGTGTGCCATTATTGAGGACCTGCTGCCTGCCTCCTACTTCAGCACCA
CCCTGCTAGGTGTCCAGACTGACCAGCGGGTCCTGCGCCACCTGATTGTCCAGTACCTGCCTCG
CTTAGACAAGCTGTTGCAGGAGCATGACATTGAGCTGTCTCTGATCACGCTGCACTGGTTCCTC
ACGGCCTTCGCCAGCGTGGTGCACATCAGACTGCTGCTGCGCATCTGGGACCTGTTCTTCTACG
AGGGCTCCCTGGTGTTGTTCCAGACTACGCTGGGCATGCTGCGCCTTAAGGAGGAAGAGCTGAT
ACAGTCGGAGAACTCAGCGTCCATCTTCAACACGCTGTCGGACATCCCTGCCCAGATGGATGAT
GCAGAGCTGCTGCTGGGGGAGGCCATGCAGCTGGCTGGCTCCCTCACTGATGTGGCTGTGGAGA
CCCAGCGCCGCAAGCATCTGGCCTACCTCATTGCAGACCAAGGCCAGACCCTGGGGACGAGCAC
CACCACCAGCCTCTCTCAGGTTGTACGGCGAAGGACCCAGCGGAGAAAGTCTGGCATCACCTCC
CTGCTCTTTGGAGAGGATGACCTAGAAGCTCTCAAGGCAAAGAACATCAAACAAACAGAGCTGG
TAGCTGACCTTCGTGAAGCCATTTTACGTGTGGCACGCCACTTCCAGTGCACAGACCCCAAGAA
CTGTAGTGTGGAGCTGACGCCAGACTACAGCATGGAGAGCCACCAGCGGGACCATGAGAACTAT
GTGGCATGCTTACGCAGCCACCGGCGCCGGGCCAAGGCCCTGCTGGACTTTGAGCGTCATGACG
ATGACGAGCTAGGCTTCCGCAAAAATGACATCATCACGATCATTTCTCAGAAGGATGAGCACTG
CTGGGTGGGTGAGCTGAACGGCCTGAGAGGCTGGTTTCCAGCCAAGTTTGTGGAGGTCCTGGAT
GAGCGAAGTAAAGAGTACTCCATTGCGGGGGATGACTCTGTGACTGAAGGAGTAACAGACCTCG
TGCGAGGGACCCTCTGCCCAGCCCTCAAGGCCCTATTTGAACATGGATTGAAGAAGCCATCCTT
GCTTGGGGGTGCTTGCCACCCCTGGCTGTTTATTGAGGAGGCAGCAGGCCGGGAAGTCGAGAGA
GACTTTGATTCTGTGTACTCCCGCCTGGTGCTCTGTAAGACCTACAGGTTGGATGAAGACGGCA
AAGTCCTGACCCCTGAAGAGCTGCTGTACCGGGCCGTGCAGTCTGTGAATGTGACCCATGATGC
AGCACACGCACAGATGGATGTCAAACTCCGTTCACTTATCTGTGTGGGGCTCAATGAGCAGGTC
CTACACCTGTGGCTAGAGGTACTCTGCTCCAGCCTGCCCACCGTGGAGAAGTGGTACCAGCCCT
GGTCCTTCCTGCGCAGCCCTGGCTGGGTCCAGATCAAGTGTGAGCTCCGTGTCCTCTGCTGCTT
TGCCTTCAGCCTCTCCCAGGACTGGGAGCTCCCCGCTAAGAGAGAGGAGGAGAAGCAGCCACTG
AAGGAGGGTGTTCAGGACATGCTGGTGAAGCACCATCTCTTCAGCTGGGACATAGATGGATGAT
GCTCCTTCTAGCTGCTCTGTGGCTCCCAGGCCTACCCATCATAGACTGCCTGGCAGGCTCCTCC
CTTCCAGAGAAAGAAGGCAGAGCCCTGGCCAGCCTCAGGCCTTCCTCCTCAAGCTAGGAGGTTC
AGGGAAAGACACCCCAGAGCTTACTCAGGACCCATGATCAATGTCTGGGCCTCCCCTGTTGAGG
CTCCCGCAGTTGGCAAAAGCATATACTGGTGGCCAGGTCAGCTGCTCTCCTTAATATGGTCCTG
GGGGTGTCCTGCCAGAGTCCTTAAGGAAGCCCTGGGTGCCAGCCATATGGTGTATGAACCAAAA
ACCACGTGAAGCAGCAGAAAGCCACACACACCTATGCTGCTCAGGAAGTGCGTAGGCTAACAGC
AGACAAAGGCCCCTCGACCTTTACTGTAAATAAATCTTTTTGTGAGAGCAA

hide sequence

RefSeq Acc Id:

XM_006242099 ⟹ XP_006242161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	114,394,724 - 114,424,281 (+)	NCBI
mRatBN7.2	7	112,514,454 - 112,543,555 (+)	NCBI
Rnor_6.0	7	122,203,498 - 122,232,993 (+)	NCBI
Rnor_5.0	7	122,187,850 - 122,217,330 (+)	NCBI

Sequence:

show sequence

CCCGCGCGTGCGCAGTAGGGCAGCTGTCGCTGATTAGGAGCCAGCCGCTAGCCGGAGCAGCTGA
GGTGCTGAGGTGGCCCTGACACAGGGCAGATGAAGCCTGAGGAGCCTCATGACAGTCAGAGATG
CCAATGATGACCATCTATGCCTAGATCTATGAAGAGCTGCCATCGTCCACAGCACATGATGTCA
GGAAACCACACGCCTTCTGCTAGTGGCCCTTTCTCTGCCCTGACTCCAAGCATATGGCCCCAGG
AGATCCTGGCAAAATCCTCACAGAAGGAAGACTCCTCAGAGCCAGAGATCTGCTATGATGAGTT
TGGTTTCCGAGTGGACAAGGAAGGTTCTGAGCCTGGATGCAGCCAGATGGCAGGCACACCCCTG
GTAGAGGATCCCCCTCAGAGGCTACGTTGGCAGGCTCACCTGGAGTTTACCCACAACCATGATG
TTGGGGATCTCACCTGGGACAAGATTGCAGTCTCCCTCCCCCGCTCTGAGAAACTCCGTTCCCT
AGTGCTGGCTGGCATCCCGCATGGCATGAGGCCACAGTTGTGGATGCGGCTCTCTGGGGCACTG
CAGAAGAAGAAGAACTCTGAGTTGTCCTACCGTGAGATTGTAAAGAACAGCTCCAATGATGAGA
CCATCGCTGCCAAACAGATCGAAAAGGACCTGCTCCGTACCATGCCCAGCAACGCCTGCTTTGC
CAATGTGAACAGCATCGGAGTGCCCCGCCTGCGCAGAGTCCTTCGAGCACTGGCCTGGCTCTAT
CCAGAGATTGGCTACTGCCAGGGCACAGGCATGGTGGCTGCCTGTCTCCTGCTGTTCCTGGAGG
AGGAGGACGCCTTCTGGATGATGTGTGCCATTATTGAGGACCTGCTGCCTGCCTCCTACTTCAG
CACCACCCTGCTAGGTGTCCAGACTGACCAGCGGGTCCTGCGCCACCTGATTGTCCAGTACCTG
CCTCGCTTAGACAAGCTGTTGCAGGAGCATGACATTGAGCTGTCTCTGATCACGCTGCACTGGT
TCCTCACGGCCTTCGCCAGCGTGGTGCACATCAGACTGCTGCTGCGCATCTGGGACCTGTTCTT
CTACGAGGGCTCCCTGGTGTTGTTCCAGACTACGCTGGGCATGCTGCGCCTTAAGGAGGAAGAG
CTGATACAGTCGGAGAACTCAGCGTCCATCTTCAACACGCTGTCGGACATCCCTGCCCAGATGG
ATGATGCAGAGCTGCTGCTGGGGGAGGCCATGCAGCTGGCTGGCTCCCTCACTGATGTGGCTGT
GGAGACCCAGCGCCGCAAGCATCTGGCCTACCTCATTGCAGACCAAGGCCAGACCCTGGGGACG
AGCACCACCACCAGCCTCTCTCAGGTTGTACGGCGAAGGACCCAGCGGAGAAAGTCTGGCATCA
CCTCCCTGCTCTTTGGAGAGGATGACCTAGAAGCTCTCAAGGCAAAGAACATCAAACAAACAGA
GCTGGTAGCTGACCTTCGTGAAGCCATTTTACGTGTGGCACGCCACTTCCAGTGCACAGACCCC
AAGAACTGTAGTGTGGAGCTGACGCCAGACTACAGCATGGAGAGCCACCAGCGGGACCATGAGA
ACTATGTGGCATGCTTACGCAGCCACCGGCGCCGGGCCAAGGCCCTGCTGGACTTTGAGCGTCA
TGACGATGACGAGCTAGGCTTCCGCAAAAATGACATCATCACGATCATTTCTCAGAAGGATGAG
CACTGCTGGGTGGGTGAGCTGAACGGCCTGAGAGGCTGGTTTCCAGCCAAGTTTGTGGAGGTCC
TGGATGAGCGAAGTAAAGAGTACTCCATTGCGGGGGATGACTCTGTGACTGAAGGAGTAACAGA
CCTCGTGCGAGGGACCCTCTGCCCAGCCCTCAAGGCCCTATTTGAACATGGATTGAAGAAGCCA
TCCTTGCTTGGGGGTGCTTGCCACCCCTGGCTGTTTATTGAGGAGGCAGCAGGCCGGGAAGTCG
AGAGAGACTTTGATTCTGTGTACTCCCGCCTGGTGCTCTGTAAGACCTACAGGTTGGATGAAGA
CGGCAAAGTCCTGACCCCTGAAGAGCTGCTGTACCGGGCCGTGCAGTCTGTGAATGTGACCCAT
GATGCAGCACACGCACAGATGGATGTCAAACTCCGTTCACTTATCTGTGTGGGGCTCAATGAGC
AGGTCCTACACCTGTGGCTAGAGGTACTCTGCTCCAGCCTGCCCACCGTGGAGAAGTGGTACCA
GCCCTGGTCCTTCCTGCGCAGCCCTGGCTGGGTCCAGATCAAGTGTGAGCTCCGTGTCCTCTGC
TGCTTTGCCTTCAGCCTCTCCCAGGACTGGGAGCTCCCCGCTAAGAGAGAGAAGTGACCTGTGG
TTCCAGGGTGGTTCCTGCCCATGACTAGGGCTGTTCTGTGCGCAGGAGGAGAAGCAGCCACTGA
AGGAGGGTGTTCAGGACATGCTGGTGAAGCACCATCTCTTCAGCTGGGACATAGATGGATGATG
CTCCTTCTAGCTGCTCTGTGGCTCCCAGGCCTACCCATCATAGACTGCCTGGCAGGCTCCTCCC
TTCCAGAGAAAGAAGGCAGAGCCCTGGCCAGCCTCAGGCCTTCCTCCTCAAGCTAGGAGGTTCA
GGGAAAGACACCCCAGAGCTTACTCAGGACCCATGATCAATGTCTGGGCCTCCCCTGTTGAGGC
TCCCGCAGTTGGCAAAAGCATATACTGGTGGCCAGGTCAGCTGCTCTCCTTAATATGGTCCTGG
GGGTGTCCTGCCAGAGTCCTTAAGGAAGCCCTGGGTGCCAGCCATATGGTGTATGAACCAAAAA
CCACGTGAAGCAGCAGAAAGCCACACACACCTATGCTGCTCAGGAAGTGCGTAGGCTAACAGCA
GACAAAGGCCCCTCGACCTTTACTGTAAATAAATCTTTTTGTGAGAGCAA

hide sequence

RefSeq Acc Id:

XM_017594989 ⟹ XP_017450478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	114,403,374 - 114,424,281 (+)	NCBI
mRatBN7.2	7	112,532,543 - 112,544,109 (+)	NCBI
Rnor_6.0	7	122,219,771 - 122,232,993 (+)	NCBI

Sequence:

show sequence

AGATCTACCTGCTTCTGCCTTCTGAGTATGGGGATTAAAGTCCTGCACCACCACACTGAGCATT
AATTTTTAATTATTATTTGGGGCTGCAGAGATACCTCAGTGGTTGAGAGCACTTGTTACTTTTC
TAGAGGACCCAGAATTAACTCCCAGCATCCTACATGATGGGTTACAACTATCTGAAACTCCAGT
GCCAAAGAATCTGACCCCTCTGATCTCCTCAGGCACCAGCAACACATATAGTGCACATACATAC
ATGCAGGCAAATTTCCATAAATAAAAGATAGATCTTTAAACATTTTTAAATTTTAAGCTACTGT
CTTATGTGTATGGGTGTTTTGCCAAATCTTTGTACTATACACATGAAGTACCCTCAGAGGCCAG
AAGAGTGCATTAGATTTCCTGGAACTGGAGTTACAAACAGTTGAGAGCCACCATGTGAATGCCG
GGAATTGAACCTGGGTCCTCTGCAGGGTCAGGAAGAGCTCCTAAATGTTTTTGAGTGTTTCTGA
TACTTAAAAAGTTTCAGGCCAGACATGGTGGCACATGCCTTTAATCCCAACATAGGGAGAAACA
GGCAGATCTCTGTGAGGTCAAGGTCAGCCTAATCTACATAGCAAAATCCAGGACGGCCAGGGCT
ATGTAGAGACCCTGTCTCAAATAAATAAAAAATGAAGTTTTAGACTTTCCAATTAGGGATACTA
AGATTTTCTAAATTCTGAAAAAGTGTGATAGTGTGATACCTCAAGGAGTTATAGTCCCAAGTAT
TTCCAAAGAAAATAACAAAAGATCAAGACCAAGCTGGGCAGAGTGGCATATGTCTATAGTCCCA
GCATTTGAGTCTGAGATGGAAGAAAGATCTTGAATCCAGAAGTTCAAGACCAGCCCGGGCAACA
TAGGCCAGATTTTAAAACATAAAAACACAACAAAACCAAGACCAATAAATGGCCTTCATGGCCT
GATCACCTTTTGTTTTGAACCAGGATTCAATTATATAGACAGGCTGATCTTAAGTTTGCAGTCC
CCTACTTCTGCTCCCTGAATGCTGGTATTATAGGTGTGGGTCTTATGACCTAATCCCTCCTCCT
CTCATAGGTCCAGTCATTTCCTCTCTCTTCCTGTTCTCCTCTCCCTCTTCCTTTCTTGCCTTTT
AGCCTTTCTCAGACTTTCCCAGCTCTGAGCCATTCTCACCAGGTTATCAGTTATCTGTAGCTTT
CAGAGTCATCTCATCTCTTTACAGGAAAAAAGTGGTCTTTAGGCTCTTAGGTGCCACCAAAAAT
CAGTGTTTTGTCTGTATTGGTTCAGCCTTTGTGTATCCTGGAAGCTGTTTGGAGAAAGGCACTT
GTGAGGCAGTAACCCTGCTGCCTTGTCAGGGGTATCTGTCTCTCTAGTCCATGTCAGGAGACCG
CAGGAAGTGAATAGTACCTCTGTGCCTTCATATAGTGGCAACATTCGTCTAACGGGAAATTGTG
GGATTGATAAACTAAGGAGGGACACACAGCATCAGAACTGGCTCTTTTAAGCTTGTGCATTTAA
TTGTTACAGTTTCTTCAGAGCAACTCACAAGTGGCTTCATCAATTATGGTTTTCTAAGGTTTCT
TTTTAAAAGACAACACGGGGGCAGCCACAGATCAGGTAACCAACATGTGATTAACTCCTTAGGC
TGCTTCTATCAGTTCCCAGCTGAGTGCTCTCAGGGTAATTTCCATGGCAACCAGAAGCTGAACA
ACCTGCCTGCCCAGCTCAGCAGTGTCACATCCAGGAGACTTAAGGACAGCCCTAAGTGGCAGAT
GAAGCCTGAGGAGCCTCATGACAGTCAGAGATGCCAATGATGACCATCTATGCCTAGATCTATG
AAGAGCTGCCATCGTCCACAGCACATGATGTCAGGAAACCACACGCCTTCTGCTAGTGGCCCTT
TCTCTGCCCTGACTCCAAGCATATGGCCCCAGGAGATCCTGGCAAAATCCTCACAGAAGGAAGA
CTCCTCAGAGCCAGAGATCTGCTATGATGAGTTTGGTTTCCGAGTGGACAAGGAAGGTTCTGAG
CCTGGATGCAGCCAGATGGCAGGCACACCCCTGGTAGAGGATCCCCCTCAGAGGCTACGTTGGC
AGGCTCACCTGGAGTTTACCCACAACCATGATGTTGGGGATCTCACCTGGGACAAGATTGCAGT
CTCCCTCCCCCGCTCTGAGAAACTCCGTTCCCTAGTGCTGGCTGGCATCCCGCATGGCATGAGG
CCACAGTTGTGGATGCGGCTCTCTGGGGCACTGCAGAAGAAGAAGAACTCTGAGTTGTCCTACC
GTGAGATTGTAAAGAACAGCTCCAATGATGAGACCATCGCTGCCAAACAGATCGAAAAGGACCT
GCTCCGTACCATGCCCAGCAACGCCTGCTTTGCCAATGTGAACAGCATCGGAGTGCCCCGCCTG
CGCAGAGTCCTTCGAGCACTGGCCTGGCTCTATCCAGAGATTGGCTACTGCCAGGGCACAGGCA
TGGTGGCTGCCTGTCTCCTGCTGTTCCTGGAGGAGGAGGACGCCTTCTGGATGATGTGTGCCAT
TATTGAGGACCTGCTGCCTGCCTCCTACTTCAGCACCACCCTGCTAGGTGTCCAGACTGACCAG
CGGGTCCTGCGCCACCTGATTGTCCAGTACCTGCCTCGCTTAGACAAGCTGTTGCAGGAGCATG
ACATTGAGCTGTCTCTGATCACGCTGCACTGGTTCCTCACGGCCTTCGCCAGCGTGGTGCACAT
CAGACTGCTGCTGCGCATCTGGGACCTGTTCTTCTACGAGGGCTCCCTGGTGTTGTTCCAGACT
ACGCTGGGCATGCTGCGCCTTAAGGAGGAAGAGCTGATACAGTCGGAGAACTCAGCGTCCATCT
TCAACACGCTGTCGGACATCCCTGCCCAGATGGATGATGCAGAGCTGCTGCTGGGGGAGGCCAT
GCAGCTGGCTGGCTCCCTCACTGATGTGGCTGTGGAGACCCAGCGCCGCAAGCATCTGGCCTAC
CTCATTGCAGACCAAGGCCAGACCCTGGGGACGAGCACCACCACCAGCCTCTCTCAGGTTGTAC
GGCGAAGGACCCAGCGGAGAAAGTCTGGCATCACCTCCCTGCTCTTTGGAGAGGATGACCTAGA
AGCTCTCAAGGCAAAGAACATCAAACAAACAGAGCTGGTAGCTGACCTTCGTGAAGCCATTTTA
CGTGTGGCACGCCACTTCCAGTGCACAGACCCCAAGAACTGTAGTGTGGAGCTGACGCCAGACT
ACAGCATGGAGAGCCACCAGCGGGACCATGAGAACTATGTGGCATGCTTACGCAGCCACCGGCG
CCGGGCCAAGGCCCTGCTGGACTTTGAGCGTCATGACGATGACGAGCTAGGCTTCCGCAAAAAT
GACATCATCACGATCATTTCTCAGAAGGATGAGCACTGCTGGGTGGGTGAGCTGAACGGCCTGA
GAGGCTGGTTTCCAGCCAAGTTTGTGGAGGTCCTGGATGAGCGAAGTAAAGAGTACTCCATTGC
GGGGGATGACTCTGTGACTGAAGGAGTAACAGACCTCGTGCGAGGGACCCTCTGCCCAGCCCTC
AAGGCCCTATTTGAACATGGATTGAAGAAGCCATCCTTGCTTGGGGGTGCTTGCCACCCCTGGC
TGTTTATTGAGGAGGCAGCAGGCCGGGAAGTCGAGAGAGACTTTGATTCTGTGTACTCCCGCCT
GGTGCTCTGTAAGACCTACAGGTTGGATGAAGACGGCAAAGTCCTGACCCCTGAAGAGCTGCTG
TACCGGGCCGTGCAGTCTGTGAATGTGACCCATGATGCAGCACACGCACAGATGGATGTCAAAC
TCCGTTCACTTATCTGTGTGGGGCTCAATGAGCAGGTCCTACACCTGTGGCTAGAGGTACTCTG
CTCCAGCCTGCCCACCGTGGAGAAGTGGTACCAGCCCTGGTCCTTCCTGCGCAGCCCTGGCTGG
GTCCAGATCAAGTGTGAGCTCCGTGTCCTCTGCTGCTTTGCCTTCAGCCTCTCCCAGGACTGGG
AGCTCCCCGCTAAGAGAGAGGAGGAGAAGCAGCCACTGAAGGAGGGTGTTCAGGACATGCTGGT
GAAGCACCATCTCTTCAGCTGGGACATAGATGGATGATGCTCCTTCTAGCTGCTCTGTGGCTCC
CAGGCCTACCCATCATAGACTGCCTGGCAGGCTCCTCCCTTCCAGAGAAAGAAGGCAGAGCCCT
GGCCAGCCTCAGGCCTTCCTCCTCAAGCTAGGAGGTTCAGGGAAAGACACCCCAGAGCTTACTC
AGGACCCATGATCAATGTCTGGGCCTCCCCTGTTGAGGCTCCCGCAGTTGGCAAAAGCATATAC
TGGTGGCCAGGTCAGCTGCTCTCCTTAATATGGTCCTGGGGGTGTCCTGCCAGAGTCCTTAAGG
AAGCCCTGGGTGCCAGCCATATGGTGTATGAACCAAAAACCACGTGAAGCAGCAGAAAGCCACA
CACACCTATGCTGCTCAGGAAGTGCGTAGGCTAACAGCAGACAAAGGCCCCTCGACCTTTACTG
TAAATAAATCTTTTTGTGAGAGCAA

hide sequence

RefSeq Acc Id:

XM_039079595 ⟹ XP_038935523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	114,394,878 - 114,424,281 (+)	NCBI
mRatBN7.2	7	112,514,909 - 112,544,109 (+)	NCBI

RefSeq Acc Id:

XM_063263926 ⟹ XP_063119996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	114,403,377 - 114,424,281 (+)	NCBI

RefSeq Acc Id:

XM_063263927 ⟹ XP_063119997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	114,395,069 - 114,424,281 (+)	NCBI

RefSeq Acc Id:

XM_063263928 ⟹ XP_063119998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	114,394,870 - 114,424,281 (+)	NCBI

RefSeq Acc Id:

XM_063263929 ⟹ XP_063119999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	114,394,798 - 114,424,281 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_942082	(Get FASTA)	NCBI Sequence Viewer
	XP_006242158	(Get FASTA)	NCBI Sequence Viewer
	XP_006242161	(Get FASTA)	NCBI Sequence Viewer
	XP_017450478	(Get FASTA)	NCBI Sequence Viewer
	XP_038935523	(Get FASTA)	NCBI Sequence Viewer
	XP_063119996	(Get FASTA)	NCBI Sequence Viewer
	XP_063119997	(Get FASTA)	NCBI Sequence Viewer
	XP_063119998	(Get FASTA)	NCBI Sequence Viewer
	XP_063119999	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH62060	(Get FASTA)	NCBI Sequence Viewer
	BAC82539	(Get FASTA)	NCBI Sequence Viewer
	EDM15740	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025381
	ENSRNOP00000025381.4
	ENSRNOP00000079207.1
	ENSRNOP00000080335.1
GenBank Protein	Q6P6R7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_942082 ⟸ NM_198787

- UniProtKB:

F1LQU9 (UniProtKB/TrEMBL), A6HSY2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPRSMKSCHRPQHMMSGNHTPSASGPFSALTPSIWPQEILAKSSQKEDSSEPEICYDEFGFRVD
KEGSEPGCSQMAGTPLVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGI
PHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSI
GVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLG
VQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSL
VLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMDDAELLLGEAMQLAGSLTDVAVETQRR
KHLAYLIADQGQTLGTSTTTSLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADL
REAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDEL
GFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGT
LCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLT
PEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFL
RSPGWVQIKCELRVLCCFAFSLSQDWELPAKREEEKQPLKEGVQDMLVKHHLFSWDIDG

hide sequence

RefSeq Acc Id:	XP_006242158 ⟸ XM_006242096
- Peptide Label:	isoform X1
- UniProtKB:	F1LQU9 (UniProtKB/TrEMBL), A6HSY2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRSMKSCHRPQHMMSGNHTPSASGPFSALTPSIWPQEILAKSSQKEDSSEPEICYDEFGFRVD KEGSEPGCSQMAGTPLVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGI PHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSI GVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLG VQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSL VLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMDDAELLLGEAMQLAGSLTDVAVETQRR KHLAYLIADQGQTLGTSTTTSLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADL REAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDEL GFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGT LCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLT PEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFL RSPGWVQIKCELRVLCCFAFSLSQDWELPAKREEEKQPLKEGVQDMLVKHHLFSWDIDG hide sequence

RefSeq Acc Id:	XP_006242161 ⟸ XM_006242099
- Peptide Label:	isoform X2
- UniProtKB:	A6HSY2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRSMKSCHRPQHMMSGNHTPSASGPFSALTPSIWPQEILAKSSQKEDSSEPEICYDEFGFRVD KEGSEPGCSQMAGTPLVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGI PHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSI GVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLG VQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSL VLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMDDAELLLGEAMQLAGSLTDVAVETQRR KHLAYLIADQGQTLGTSTTTSLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADL REAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDEL GFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGT LCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLT PEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFL RSPGWVQIKCELRVLCCFAFSLSQDWELPAKREK hide sequence

RefSeq Acc Id:	XP_017450478 ⟸ XM_017594989
- Peptide Label:	isoform X1
- UniProtKB:	F1LQU9 (UniProtKB/TrEMBL), A6HSY2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRSMKSCHRPQHMMSGNHTPSASGPFSALTPSIWPQEILAKSSQKEDSSEPEICYDEFGFRVD KEGSEPGCSQMAGTPLVEDPPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGI PHGMRPQLWMRLSGALQKKKNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSI GVPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLG VQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSL VLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMDDAELLLGEAMQLAGSLTDVAVETQRR KHLAYLIADQGQTLGTSTTTSLSQVVRRRTQRRKSGITSLLFGEDDLEALKAKNIKQTELVADL REAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLDFERHDDDEL GFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLVRGT LCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLT PEELLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFL RSPGWVQIKCELRVLCCFAFSLSQDWELPAKREEEKQPLKEGVQDMLVKHHLFSWDIDG hide sequence

RefSeq Acc Id:

ENSRNOP00000025381 ⟸ ENSRNOT00000025382

RefSeq Acc Id:	XP_038935523 ⟸ XM_039079595
- Peptide Label:	isoform X1
- UniProtKB:	F1LQU9 (UniProtKB/TrEMBL), A6HSY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000079207 ⟸ ENSRNOT00000098829

RefSeq Acc Id:

ENSRNOP00000080335 ⟸ ENSRNOT00000101805

RefSeq Acc Id:	XP_063119999 ⟸ XM_063263929
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063119998 ⟸ XM_063263928
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063119997 ⟸ XM_063263927
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063119996 ⟸ XM_063263926
- Peptide Label:	isoform X1

Protein Domains

Rab-GAP TBC RUN SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P6R7-F1-model_v2	AlphaFold	Q6P6R7	1-749	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695503

Promoter ID:

EPDNEW_R6028

Type:

initiation region

Name:

Sgsm3_1

Description:

small G protein signaling modulator 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	122,203,523 - 122,203,583	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735113	AgrOrtholog
BioCyc Gene	G2FUF-32688	BioCyc
Ensembl Genes	ENSRNOG00000018745	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025382	ENTREZGENE
	ENSRNOT00000025382.6	UniProtKB/TrEMBL
	ENSRNOT00000098829.1	UniProtKB/TrEMBL
	ENSRNOT00000101805.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.900	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	putative rabgap domain of human tbc1 domain family member 14 like domains	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5599107	IMAGE-MGC_LOAD
InterPro	Rab-GTPase-TBC_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rab-GTPase_TBC_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Run_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Run_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SGSM3_SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:362963	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:72600	IMAGE-MGC_LOAD
NCBI Gene	362963	ENTREZGENE
PANTHER	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RUN AND TBC1 DOMAIN-CONTAINING PROTEIN 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	RabGAP-TBC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RUN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Sgsm3	PhenoGen
PROSITE	RUN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TBC_RABGAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018745	RatGTEx
SMART	RUN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TBC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF140741	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF47923	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50044	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZM92_RAT	UniProtKB/TrEMBL
	A0A8I5ZPG8_RAT	UniProtKB/TrEMBL
	A6HSY2	ENTREZGENE, UniProtKB/TrEMBL
	F1LQU9	ENTREZGENE, UniProtKB/TrEMBL
	Q6P6R7	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q76KK4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Sgsm3	small G protein signaling modulator 3	Rutbc3	RUN and TBC1 domain containing 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Rutbc3	RUN and TBC1 domain containing 3	bdif-1	hypothetical protein	Symbol and Name updated	1299863	APPROVED

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Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar