Aatf (apoptosis antagonizing transcription factor) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Aatf (apoptosis antagonizing transcription factor) Mus musculus
Analyze
Symbol: Aatf
Name: apoptosis antagonizing transcription factor
RGD ID: 734399
MGI Page MGI
Description: Predicted to enable leucine zipper domain binding activity; protein kinase binding activity; and tau protein binding activity. Acts upstream of or within several processes, including negative regulation of amyloid precursor protein biosynthetic process; negative regulation of apoptotic signaling pathway; and regulation of mitotic cell cycle. Located in cytoplasm and nucleolus. Part of transcription regulator complex. Is expressed in several structures, including early conceptus; genitourinary system; liver; nervous system; and tooth. Orthologous to human AATF (apoptosis antagonizing transcription factor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933415H02Rik; 5830465M17Rik; apoptosis-antagonizing transcription factor; Che-1; MGC35916; rb-binding protein Che-1; Tr; traube protein; Trb
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,313,682 - 84,404,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,313,681 - 84,404,348 (-)EnsemblGRCm39 Ensembl
GRCm381184,422,856 - 84,513,584 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,422,855 - 84,513,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv371184,236,358 - 84,327,003 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361184,239,051 - 84,329,696 (-)NCBIMGSCv36mm8
Celera1194,034,340 - 94,126,318 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11071758   PMID:11076861   PMID:11544199   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14627703  
PMID:14636992   PMID:14681479   PMID:15489334   PMID:15741177   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16919269   PMID:17157788   PMID:17468107   PMID:17488777   PMID:18287559  
PMID:19911006   PMID:20059953   PMID:20412781   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22922362   PMID:22933572   PMID:26919559   PMID:27589891   PMID:29321668   PMID:29509260  
PMID:30770218   PMID:31545418   PMID:32325033   PMID:34321999   PMID:37435061  


Genomics

Comparative Map Data
Aatf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,313,682 - 84,404,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,313,681 - 84,404,348 (-)EnsemblGRCm39 Ensembl
GRCm381184,422,856 - 84,513,584 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,422,855 - 84,513,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv371184,236,358 - 84,327,003 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361184,239,051 - 84,329,696 (-)NCBIMGSCv36mm8
Celera1194,034,340 - 94,126,318 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.3NCBI
AATF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381736,948,954 - 37,056,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1736,948,925 - 37,056,871 (+)EnsemblGRCh38hg38GRCh38
GRCh371735,306,254 - 35,414,171 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361732,380,288 - 32,488,284 (+)NCBINCBI36Build 36hg18NCBI36
Build 341732,380,370 - 32,488,283NCBI
Celera1732,128,305 - 32,236,266 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1731,242,118 - 31,349,732 (+)NCBIHuRef
CHM1_11735,340,438 - 35,448,434 (+)NCBICHM1_1
T2T-CHM13v2.01737,936,011 - 38,043,848 (+)NCBIT2T-CHM13v2.0
Aatf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,796,502 - 69,889,671 (-)NCBIGRCr8
mRatBN7.21069,299,029 - 69,392,207 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1069,299,037 - 69,392,201 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,919,023 - 74,012,160 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01073,424,050 - 73,517,193 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,888,465 - 68,981,611 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,744,648 - 71,837,851 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1071,744,659 - 71,837,851 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01071,654,744 - 71,747,166 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,701,724 - 72,794,495 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,716,103 - 72,808,865 (-)NCBI
Celera1068,226,097 - 68,318,677 (-)NCBICelera
Cytogenetic Map10q26NCBI
Aatf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955451929,510 - 1,033,492 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955451929,278 - 1,033,665 (-)NCBIChiLan1.0ChiLan1.0
AATF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21927,706,527 - 27,808,516 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11729,588,204 - 29,690,174 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,027,351 - 20,129,255 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11720,325,282 - 20,426,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1720,325,282 - 20,426,359 (-)Ensemblpanpan1.1panPan2
AATF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1936,773,313 - 36,878,752 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl936,773,312 - 36,878,745 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha935,998,704 - 36,107,988 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0937,583,095 - 37,693,391 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl937,582,958 - 37,689,359 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1936,364,898 - 36,474,825 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0936,652,569 - 36,762,368 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0936,739,791 - 36,849,296 (+)NCBIUU_Cfam_GSD_1.0
Aatf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560235,755,004 - 35,865,290 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364901,209,967 - 1,319,802 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364901,209,760 - 1,320,046 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AATF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,461,830 - 38,564,306 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,461,809 - 38,563,537 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,078,719 - 40,180,472 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AATF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11630,728,070 - 30,838,816 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1630,728,070 - 30,838,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660771,459,496 - 1,571,604 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aatf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248713,965,985 - 4,079,281 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248713,966,323 - 4,078,970 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Aatf
2046 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:455
Count of miRNA genes:348
Interacting mature miRNAs:390
Transcripts:ENSMUST00000018841, ENSMUST00000127042, ENSMUST00000141093, ENSMUST00000148434
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF222801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF322223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY306199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000018841   ⟹   ENSMUSP00000018841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,313,681 - 84,404,348 (-)Ensembl
GRCm38.p6 Ensembl1184,422,855 - 84,513,522 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127042
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,313,709 - 84,382,376 (-)Ensembl
GRCm38.p6 Ensembl1184,422,883 - 84,491,550 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,333,335 - 84,340,359 (-)Ensembl
GRCm38.p6 Ensembl1184,442,509 - 84,449,533 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,357,731 - 84,404,348 (-)Ensembl
GRCm38.p6 Ensembl1184,466,905 - 84,513,522 (-)Ensembl
RefSeq Acc Id: NM_019816   ⟹   NP_062790
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,313,682 - 84,404,327 (-)NCBI
GRCm381184,422,856 - 84,513,501 (-)NCBI
MGSCv371184,236,358 - 84,327,003 (-)RGD
Celera1194,034,340 - 94,126,318 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533789   ⟹   XP_006533852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,313,683 - 84,404,392 (-)NCBI
GRCm381184,422,857 - 84,513,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156864   ⟹   XP_036012757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,382,289 - 84,404,433 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949482
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,313,683 - 84,404,393 (-)NCBI
GRCm381184,422,857 - 84,513,567 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936998
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,313,683 - 84,404,393 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936999
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,313,683 - 84,404,433 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937000
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,313,683 - 84,404,433 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937001
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,313,683 - 84,404,433 (-)NCBI
Sequence:
RefSeq Acc Id: XR_388498
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,313,683 - 84,404,433 (-)NCBI
GRCm381184,422,857 - 84,513,584 (-)NCBI
Sequence:
RefSeq Acc Id: XR_388499
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,313,683 - 84,404,433 (-)NCBI
GRCm381184,422,857 - 84,513,584 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_062790   ⟸   NM_019816
- UniProtKB: Q8C5Q2 (UniProtKB/Swiss-Prot),   Q7TQN1 (UniProtKB/Swiss-Prot),   Q99P89 (UniProtKB/Swiss-Prot),   Q9JKX4 (UniProtKB/Swiss-Prot),   Q3URN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533852   ⟸   XM_006533789
- Peptide Label: isoform X1
- UniProtKB: Q3URN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000018841   ⟸   ENSMUST00000018841
RefSeq Acc Id: XP_036012757   ⟸   XM_036156864
- Peptide Label: isoform X2
Protein Domains
AATF leucine zipper-containing   Apoptosis-antagonizing transcription factor C-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JKX4-F1-model_v2 AlphaFold Q9JKX4 1-526 view protein structure

Promoters
RGD ID:6820225
Promoter ID:MM_KWN:8948
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000001940
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361184,305,006 - 84,305,506 (-)MPROMDB
RGD ID:6820224
Promoter ID:MM_KWN:8949
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108085,   OTTMUST00000001937,   OTTMUST00000001938
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361184,326,866 - 84,327,366 (-)MPROMDB
RGD ID:8675954
Promoter ID:EPDNEW_M16008
Type:initiation region
Name:Aatf_1
Description:Mus musculus apoptosis antagonizing transcription factor , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381184,513,493 - 84,513,553EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1929608 AgrOrtholog
Ensembl Genes ENSMUSG00000018697 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000018841 ENTREZGENE
  ENSMUST00000018841.3 UniProtKB/Swiss-Prot
InterPro AATF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AATF/Bfr2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AATF_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56321 UniProtKB/Swiss-Prot
MGD MGI:1929608 ENTREZGENE
NCBI Gene 56321 ENTREZGENE
PANTHER PROTEIN AATF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15565 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AATF-Che1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRAUB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Aatf PhenoGen
UniProt AATF_MOUSE UniProtKB/Swiss-Prot
  Q3URN5 ENTREZGENE, UniProtKB/TrEMBL
  Q7TQN1 ENTREZGENE
  Q8C5Q2 ENTREZGENE
  Q99P89 ENTREZGENE
  Q9JKX4 ENTREZGENE
UniProt Secondary Q7TQN1 UniProtKB/Swiss-Prot
  Q8C5Q2 UniProtKB/Swiss-Prot
  Q99P89 UniProtKB/Swiss-Prot