Trpc1 (transient receptor potential cation channel, subfamily C, member 1) - Rat Genome Database

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Gene: Trpc1 (transient receptor potential cation channel, subfamily C, member 1) Mus musculus
Analyze
Symbol: Trpc1
Name: transient receptor potential cation channel, subfamily C, member 1
RGD ID: 734059
MGI Page MGI
Description: Enables store-operated calcium channel activity. Acts upstream of or within saliva secretion. Located in basolateral plasma membrane; membrane raft; and myofibril. Part of protein-containing complex. Is expressed in cochlea; dorsal root ganglion; skeletal muscle; spinal cord; and vagus ganglion. Orthologous to human TRPC1 (transient receptor potential cation channel subfamily C member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Mtr; Mtrp1; short transient receptor potential channel 1; Tr; transient receptor protein 1; TRP-1; trp-related protein 1; Trp1; Trrp1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,587,125 - 95,632,438 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl995,587,135 - 95,632,428 (-)EnsemblGRCm39 Ensembl
GRCm38995,705,072 - 95,750,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,705,082 - 95,750,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv37995,607,046 - 95,650,777 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36995,515,979 - 95,559,710 (-)NCBIMGSCv36mm8
Celera995,273,759 - 95,317,486 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
amiloride  (ISO)
amitrole  (ISO)
arsenous acid  (EXP)
atrazine  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (ISO)
bisphenol F  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
carbachol  (EXP)
chloroquine  (ISO)
chlorpyrifos  (EXP)
cisplatin  (EXP)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP,ISO)
doxorubicin  (ISO)
fasudil  (EXP,ISO)
fenvalerate  (ISO)
flavonoids  (ISO)
indometacin  (ISO)
lead diacetate  (EXP,ISO)
lead(0)  (ISO)
malaoxon  (ISO)
malathion  (ISO)
metformin  (EXP)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP)
Muscarine  (EXP)
nickel atom  (ISO)
ouabain  (ISO)
ozone  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
phenylephrine  (ISO)
pyrethrins  (ISO)
rotenone  (EXP)
sildenafil citrate  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
Y-27632  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. TRPC1 and TRPC6 channels cooperate with TRPV4 to mediate mechanical hyperalgesia and nociceptor sensitization. Alessandri-Haber N, etal., J Neurosci. 2009 May 13;29(19):6217-28. doi: 10.1523/JNEUROSCI.0893-09.2009.
2. Identification of a prognostic 5-Gene expression signature for gastric cancer. Hou JY, etal., J Cancer Res Clin Oncol. 2017 Apr;143(4):619-629. doi: 10.1007/s00432-016-2324-z. Epub 2016 Dec 29.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Attenuation of store-operated Ca2+ entry and enhanced expression of TRPC channels in caudal artery smooth muscle from Type 2 diabetic Goto-Kakizaki rats. Mita M, etal., Clin Exp Pharmacol Physiol. 2010 Jul;37(7):670-8. doi: 10.1111/j.1440-1681.2010.05373.x. Epub 2010 Mar 12.
6. HNF4 alpha and the Ca-channel TRPC1 are novel disease candidate genes in diabetic nephropathy. Niehof M and Borlak J, Diabetes. 2008 Apr;57(4):1069-77. Epub 2008 Jan 9.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. trp, a novel mammalian gene family essential for agonist-activated capacitative Ca2+ entry. Zhu X, etal., Cell 1996 May 31;85(5):661-71.
Additional References at PubMed
PMID:9165220   PMID:9722956   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11245989   PMID:11390792   PMID:12477932   PMID:14505576   PMID:14530267   PMID:15044151   PMID:15188402  
PMID:15336983   PMID:15385169   PMID:15611229   PMID:15665854   PMID:15747579   PMID:16044320   PMID:16141072   PMID:16141073   PMID:16460286   PMID:16857711   PMID:16899508   PMID:17224452  
PMID:17416589   PMID:17478725   PMID:17480026   PMID:17647013   PMID:17956991   PMID:18268005   PMID:18544631   PMID:18546016   PMID:18701065   PMID:18802326   PMID:18822346   PMID:18989690  
PMID:19001499   PMID:19322198   PMID:19332490   PMID:19351713   PMID:19648473   PMID:19695701   PMID:19797170   PMID:19812031   PMID:19834762   PMID:19846750   PMID:20097773   PMID:20571036  
PMID:20614160   PMID:20718731   PMID:20966350   PMID:21267068   PMID:21282332   PMID:21421818   PMID:21524792   PMID:21873635   PMID:21900691   PMID:21930300   PMID:21968068   PMID:22051675  
PMID:22072513   PMID:22083217   PMID:22144671   PMID:22157757   PMID:22192412   PMID:22210847   PMID:22399301   PMID:22411552   PMID:22446186   PMID:22461447   PMID:22539836   PMID:22579301  
PMID:22612431   PMID:22668831   PMID:22674725   PMID:22797250   PMID:23034388   PMID:23095462   PMID:23188715   PMID:23233529   PMID:23382219   PMID:23489970   PMID:23770672   PMID:23832809  
PMID:23852583   PMID:23922735   PMID:24022404   PMID:24144647   PMID:24251695   PMID:24464579   PMID:24613381   PMID:24630989   PMID:25047165   PMID:25347706   PMID:25471572   PMID:25595528  
PMID:25899321   PMID:26031335   PMID:26316271   PMID:26494622   PMID:26520460   PMID:26674251   PMID:26752511   PMID:26910815   PMID:26985029   PMID:27034165   PMID:27177420   PMID:27535226  
PMID:27670661   PMID:27738307   PMID:28258168   PMID:28636132   PMID:28656279   PMID:28779972   PMID:28790178   PMID:28949388   PMID:29074621   PMID:29150520   PMID:29373286   PMID:29480205  
PMID:29524421   PMID:29660945   PMID:29989850   PMID:30067380   PMID:30270038   PMID:30271326   PMID:30452936   PMID:30504729   PMID:30786075   PMID:31182642   PMID:31518158   PMID:31536487  
PMID:31603369   PMID:31722977   PMID:32085504   PMID:32110987   PMID:32321939   PMID:32322252   PMID:32350291   PMID:32359120   PMID:32414784   PMID:32875708   PMID:33884443   PMID:34816101  
PMID:35360063   PMID:35398674   PMID:36243380   PMID:36257322   PMID:36460692   PMID:36569761   PMID:36592529   PMID:38325758  


Genomics

Comparative Map Data
Trpc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,587,125 - 95,632,438 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl995,587,135 - 95,632,428 (-)EnsemblGRCm39 Ensembl
GRCm38995,705,072 - 95,750,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,705,082 - 95,750,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv37995,607,046 - 95,650,777 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36995,515,979 - 95,559,710 (-)NCBIMGSCv36mm8
Celera995,273,759 - 95,317,486 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.2NCBI
TRPC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383142,724,034 - 142,807,888 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3142,724,034 - 142,807,888 (+)EnsemblGRCh38hg38GRCh38
GRCh373142,442,876 - 142,526,730 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363143,925,956 - 144,009,420 (+)NCBINCBI36Build 36hg18NCBI36
Build 343143,925,963 - 144,009,427NCBI
Celera3140,866,763 - 140,950,233 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3139,815,981 - 139,899,449 (+)NCBIHuRef
CHM1_13142,406,259 - 142,489,727 (+)NCBICHM1_1
T2T-CHM13v2.03145,471,273 - 145,555,131 (+)NCBIT2T-CHM13v2.0
Trpc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88105,142,931 - 105,193,842 (-)NCBIGRCr8
mRatBN7.2896,263,322 - 96,314,220 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl896,263,329 - 96,314,276 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8101,935,007 - 101,979,557 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08100,134,262 - 100,178,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0897,973,204 - 98,017,754 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08103,503,982 - 103,554,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8103,503,985 - 103,554,468 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08102,955,430 - 103,005,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.08102,953,764 - 102,954,177 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48100,770,833 - 100,821,420NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera895,710,876 - 95,759,508 (-)NCBICelera
Cytogenetic Map8q31NCBI
Trpc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555083,143,868 - 3,211,613 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555083,143,868 - 3,211,613 (-)NCBIChiLan1.0ChiLan1.0
TRPC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,634,964 - 140,718,579 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13140,639,696 - 140,726,837 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03139,757,408 - 139,841,006 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13147,348,776 - 147,432,332 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3147,349,056 - 147,432,332 (+)Ensemblpanpan1.1panPan2
TRPC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12338,350,066 - 38,416,086 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2338,350,278 - 38,414,464 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2338,276,236 - 38,342,159 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02338,882,222 - 38,948,154 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2338,882,141 - 38,948,153 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12338,564,280 - 38,643,474 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02338,640,845 - 38,706,480 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02338,884,935 - 38,950,859 (+)NCBIUU_Cfam_GSD_1.0
Trpc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560277,600,930 - 77,678,903 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365404,323,528 - 4,418,685 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365404,340,672 - 4,417,655 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1383,436,395 - 83,498,478 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11383,436,343 - 83,498,419 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21391,200,922 - 91,271,298 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11547,827,295 - 47,909,207 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1547,827,247 - 47,909,202 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604120,761,507 - 20,843,909 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473019,307,346 - 19,375,537 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trpc1
1911 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:24
Interacting mature miRNAs:24
Transcripts:ENSMUST00000053785
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse

Markers in Region
UniSTS:236220  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38995,706,423 - 95,706,642UniSTSGRCm38
MGSCv37995,606,842 - 95,607,061UniSTSGRCm37
Celera995,273,555 - 95,273,774UniSTS
Cytogenetic Map9E4UniSTS
cM Map951.0UniSTS
Trpc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9E4UniSTS
cM Map951.0UniSTS
Trpc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38995,708,811 - 95,710,146UniSTSGRCm38
MGSCv37995,609,230 - 95,610,565UniSTSGRCm37
Celera995,275,943 - 95,277,278UniSTS
Cytogenetic Map9E4UniSTS
cM Map951.0UniSTS
Trpc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38995,706,772 - 95,706,881UniSTSGRCm38
MGSCv37995,607,191 - 95,607,300UniSTSGRCm37
Celera995,273,904 - 95,274,013UniSTS
Cytogenetic Map9E4UniSTS
cM Map951.0UniSTS
Trrp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38995,704,177 - 95,705,327UniSTSGRCm38
MGSCv37995,604,596 - 95,605,746UniSTSGRCm37
Celera995,271,309 - 95,272,459UniSTS
Cytogenetic Map9E4UniSTS
cM Map951.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001311123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF191551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP762453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U40980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U95167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U95168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U95169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000053785   ⟹   ENSMUSP00000057640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl995,588,680 - 95,632,411 (-)Ensembl
GRCm38.p6 Ensembl995,706,627 - 95,750,358 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186235   ⟹   ENSMUSP00000140994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl995,603,268 - 95,614,262 (-)Ensembl
GRCm38.p6 Ensembl995,721,215 - 95,732,209 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl995,597,560 - 95,600,667 (-)Ensembl
GRCm38.p6 Ensembl995,715,507 - 95,718,614 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189137   ⟹   ENSMUSP00000139672
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl995,587,135 - 95,632,411 (-)Ensembl
GRCm38.p6 Ensembl995,705,082 - 95,750,358 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl995,631,091 - 95,632,428 (-)Ensembl
GRCm38.p6 Ensembl995,749,038 - 95,750,375 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190497   ⟹   ENSMUSP00000140550
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl995,588,680 - 95,632,411 (-)Ensembl
GRCm38.p6 Ensembl995,706,627 - 95,750,358 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190604   ⟹   ENSMUSP00000139577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl995,588,680 - 95,632,411 (-)Ensembl
GRCm38.p6 Ensembl995,706,627 - 95,750,358 (-)Ensembl
RefSeq Acc Id: NM_001311123   ⟹   NP_001298052
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,135 - 95,632,401 (-)NCBI
GRCm38995,705,082 - 95,750,348 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001413351   ⟹   NP_001400280
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,135 - 95,632,401 (-)NCBI
RefSeq Acc Id: NM_001413352   ⟹   NP_001400281
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,135 - 95,632,401 (-)NCBI
RefSeq Acc Id: NM_001413353   ⟹   NP_001400282
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,135 - 95,632,401 (-)NCBI
RefSeq Acc Id: NM_001413354   ⟹   NP_001400283
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,135 - 95,632,401 (-)NCBI
RefSeq Acc Id: NM_011643   ⟹   NP_035773
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,135 - 95,632,401 (-)NCBI
GRCm38995,705,082 - 95,750,348 (-)NCBI
MGSCv37995,607,046 - 95,650,777 (-)RGD
Celera995,273,759 - 95,317,486 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511057   ⟹   XP_006511120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,135 - 95,615,187 (-)NCBI
GRCm38995,705,117 - 95,733,134 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242717   ⟹   XP_011241019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,602,040 - 95,632,437 (-)NCBI
GRCm38995,719,998 - 95,750,386 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244242   ⟹   XP_030100102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,135 - 95,632,417 (-)NCBI
GRCm38995,705,117 - 95,750,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244243   ⟹   XP_030100103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,592,165 - 95,632,433 (-)NCBI
GRCm38995,710,112 - 95,750,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244244   ⟹   XP_030100104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,135 - 95,603,427 (-)NCBI
GRCm38995,705,072 - 95,721,376 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003947858
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,587,125 - 95,632,438 (-)NCBI
GRCm38995,705,072 - 95,750,386 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_035773   ⟸   NM_011643
- Peptide Label: isoform 1
- UniProtKB: Q61056 (UniProtKB/Swiss-Prot),   O35722 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511120   ⟸   XM_006511057
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011241019   ⟸   XM_011242717
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: NP_001298052   ⟸   NM_001311123
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: XP_030100104   ⟸   XM_030244244
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030100102   ⟸   XM_030244242
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030100103   ⟸   XM_030244243
- Peptide Label: isoform X6
RefSeq Acc Id: ENSMUSP00000140994   ⟸   ENSMUST00000186235
RefSeq Acc Id: ENSMUSP00000057640   ⟸   ENSMUST00000053785
RefSeq Acc Id: ENSMUSP00000139577   ⟸   ENSMUST00000190604
RefSeq Acc Id: ENSMUSP00000140550   ⟸   ENSMUST00000190497
RefSeq Acc Id: ENSMUSP00000139672   ⟸   ENSMUST00000189137
RefSeq Acc Id: NP_001400283   ⟸   NM_001413354
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001400282   ⟸   NM_001413353
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001400281   ⟸   NM_001413352
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001400280   ⟸   NM_001413351
- Peptide Label: isoform 3
Protein Domains
Transient receptor ion channel

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61056-F1-model_v2 AlphaFold Q61056 1-793 view protein structure

Promoters
RGD ID:6845297
Promoter ID:MM_KWN:58401
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   Brain,   Kidney,   Lung,   MEF_B4
Transcripts:ENSMUST00000053785,   ENSMUST00000113006,   UC009RBJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36995,650,476 - 95,651,072 (-)MPROMDB
RGD ID:8670468
Promoter ID:EPDNEW_M13265
Type:initiation region
Name:Trpc1_1
Description:Mus musculus transient receptor potential cation channel, subfamilyC, member 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38995,750,348 - 95,750,408EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109528 AgrOrtholog
Ensembl Genes ENSMUSG00000032839 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053785 ENTREZGENE
  ENSMUST00000053785.10 UniProtKB/TrEMBL
  ENSMUST00000186235.2 UniProtKB/TrEMBL
  ENSMUST00000189137 ENTREZGENE
  ENSMUST00000189137.7 UniProtKB/TrEMBL
  ENSMUST00000190497.2 UniProtKB/TrEMBL
  ENSMUST00000190604.7 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPC1_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPC_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22063 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109528 ENTREZGENE
NCBI Gene 22063 ENTREZGENE
PANTHER PTHR10117 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10117:SF56 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trpc1 PhenoGen
PRINTS TRNSRECEPTRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPCHANNEL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WP07_MOUSE UniProtKB/TrEMBL
  A0A087WRB2_MOUSE UniProtKB/TrEMBL
  A0A087WSD0_MOUSE UniProtKB/TrEMBL
  B2RPS7_MOUSE UniProtKB/TrEMBL
  B7ZMP6_MOUSE UniProtKB/TrEMBL
  O35722 ENTREZGENE
  Q61056 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O35722 UniProtKB/Swiss-Prot