Slc26a1 (solute carrier family 26 (sulfate transporter), member 1) - Rat Genome Database

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Gene: Slc26a1 (solute carrier family 26 (sulfate transporter), member 1) Mus musculus
Analyze
Symbol: Slc26a1
Name: solute carrier family 26 (sulfate transporter), member 1
RGD ID: 733955
MGI Page MGI
Description: Enables chloride transmembrane transporter activity; oxalate transmembrane transporter activity; and sulfate:bicarbonate antiporter activity. Involved in chloride transport; oxalate transport; and sulfate transport. Acts upstream of or within chloride transmembrane transport. Located in basolateral plasma membrane. Is expressed in several structures, including alimentary system; integumental system; liver; nose; and urinary system. Human ortholog(s) of this gene implicated in calcium oxalate nephrolithiasis. Orthologous to human SLC26A1 (solute carrier family 26 member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Sa; SAT-1; Sat1; solute carrier family 26 member 1; solute carrier family 26, member 1; sulfate anion transporter 1; sulfate anion transporter-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,817,744 - 108,826,246 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,817,744 - 108,823,435 (-)EnsemblGRCm39 Ensembl
GRCm385108,669,878 - 108,678,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,669,878 - 108,675,569 (-)EnsemblGRCm38mm10GRCm38
MGSCv375109,099,560 - 109,104,668 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,910,180 - 108,915,871 (-)NCBIMGSCv36mm8
Celera5105,792,486 - 105,798,328 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12217875   PMID:12466851   PMID:12477932   PMID:12590734   PMID:14681479   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:20160351   PMID:21267068   PMID:21873635   PMID:22517357   PMID:22674389   PMID:26671068   PMID:27210743   PMID:28192541   PMID:28559854   PMID:30383413   PMID:32325033  
PMID:38111663  


Genomics

Comparative Map Data
Slc26a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,817,744 - 108,826,246 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,817,744 - 108,823,435 (-)EnsemblGRCm39 Ensembl
GRCm385108,669,878 - 108,678,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,669,878 - 108,675,569 (-)EnsemblGRCm38mm10GRCm38
MGSCv375109,099,560 - 109,104,668 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,910,180 - 108,915,871 (-)NCBIMGSCv36mm8
Celera5105,792,486 - 105,798,328 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.24NCBI
SLC26A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384978,991 - 993,404 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4979,073 - 993,440 (-)EnsemblGRCh38hg38GRCh38
GRCh374972,823 - 987,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364962,861 - 977,224 (-)NCBINCBI36Build 36hg18NCBI36
Build 344971,274 - 977,013NCBI
Celera4909,807 - 924,170 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef4944,081 - 958,446 (-)NCBIHuRef
CHM1_14972,645 - 987,011 (-)NCBICHM1_1
T2T-CHM13v2.04977,118 - 991,535 (-)NCBIT2T-CHM13v2.0
Slc26a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,180,465 - 1,190,257 (+)NCBIGRCr8
mRatBN7.2141,040,565 - 1,045,851 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,040,243 - 1,045,849 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14940,390 - 945,676 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0142,242,167 - 2,247,453 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014938,860 - 944,146 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,050,805 - 2,056,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,050,483 - 2,056,089 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,046,346 - 2,051,632 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,581,589 - 1,586,875 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,581,266 - 1,586,873 (+)NCBI
Celera141,079,905 - 1,085,191 (+)NCBICelera
Cytogenetic Map14p22NCBI
Slc26a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514475,731 - 479,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955514476,062 - 484,710 (-)NCBIChiLan1.0ChiLan1.0
SLC26A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,305,579 - 1,320,531 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan141,273,068 - 1,293,527 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v041,102,938 - 1,112,987 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.141,021,157 - 1,026,402 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl41,012,920 - 1,026,402 (-)Ensemblpanpan1.1panPan2
SLC26A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,528,045 - 91,534,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,485,270 - 91,534,115 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha393,996,593 - 94,000,624 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,526,061 - 92,532,133 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1391,699,880 - 91,705,945 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,752,838 - 91,758,900 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0392,136,646 - 92,142,712 (+)NCBIUU_Cfam_GSD_1.0
Slc26a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,507,763 - 68,519,289 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,208,451 - 22,213,592 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,209,445 - 22,213,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8335,427 - 342,444 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18335,420 - 345,955 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC26A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12747,787,201 - 47,802,834 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,789,705 - 47,793,743 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366680862,915 - 72,446 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc26a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,164,795 - 26,169,365 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,162,730 - 26,168,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc26a1
317 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1262
Count of miRNA genes:506
Interacting mature miRNAs:565
Transcripts:ENSMUST00000051757, ENSMUST00000119270, ENSMUST00000136227, ENSMUST00000163328
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
1301877Bbaa3_mB.burgdorferi-associated arthritis 3 (mouse)Not determined599455285112465722Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1357901Mdmsc2_mmodifier of muscularity 2 (mouse)Not determined5107561006112434786Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse

Markers in Region
Slc26a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5FUniSTS
cM Map553.24UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001310691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_174870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF349043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW490572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY093420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000051757   ⟹   ENSMUSP00000051561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,817,744 - 108,823,435 (-)Ensembl
GRCm38.p6 Ensembl5108,669,878 - 108,675,569 (-)Ensembl
RefSeq Acc Id: ENSMUST00000119270   ⟹   ENSMUSP00000113185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,818,400 - 108,822,619 (-)Ensembl
GRCm38.p6 Ensembl5108,670,534 - 108,674,753 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136227   ⟹   ENSMUSP00000116540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,819,949 - 108,822,651 (-)Ensembl
GRCm38.p6 Ensembl5108,672,083 - 108,674,785 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163328   ⟹   ENSMUSP00000131282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,818,416 - 108,822,619 (-)Ensembl
GRCm38.p6 Ensembl5108,670,550 - 108,674,753 (-)Ensembl
RefSeq Acc Id: NM_001310691   ⟹   NP_001297620
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,744 - 108,822,662 (-)NCBI
GRCm385108,669,878 - 108,674,796 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001310692   ⟹   NP_001297621
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,744 - 108,822,662 (-)NCBI
GRCm385108,669,878 - 108,674,796 (-)NCBI
Sequence:
RefSeq Acc Id: NM_174870   ⟹   NP_777359
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,744 - 108,823,231 (-)NCBI
GRCm385108,669,878 - 108,675,365 (-)NCBI
MGSCv375109,099,560 - 109,104,668 (-)RGD
Celera5105,792,486 - 105,798,328 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017320855   ⟹   XP_017176344
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,836 - 108,826,103 (-)NCBI
GRCm385108,669,970 - 108,678,237 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320856   ⟹   XP_017176345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,836 - 108,826,246 (-)NCBI
GRCm385108,669,970 - 108,678,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254411   ⟹   XP_030110271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,836 - 108,826,103 (-)NCBI
GRCm385108,669,970 - 108,678,237 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254412   ⟹   XP_030110272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,836 - 108,826,246 (-)NCBI
GRCm385108,669,970 - 108,678,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254413   ⟹   XP_030110273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,836 - 108,825,883 (-)NCBI
GRCm385108,669,970 - 108,678,006 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254414   ⟹   XP_030110274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,836 - 108,826,103 (-)NCBI
GRCm385108,669,970 - 108,678,237 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165081   ⟹   XP_036020974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,836 - 108,826,246 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165082   ⟹   XP_036020975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,817,836 - 108,824,036 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_777359   ⟸   NM_174870
- Peptide Label: isoform 2
- UniProtKB: Q80WF6 (UniProtKB/Swiss-Prot),   P58735 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297621   ⟸   NM_001310692
- Peptide Label: isoform 2
- UniProtKB: Q80WF6 (UniProtKB/Swiss-Prot),   P58735 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297620   ⟸   NM_001310691
- Peptide Label: isoform 1
- UniProtKB: G5E8U1 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176344   ⟸   XM_017320855
- Peptide Label: isoform X1
- UniProtKB: Q80WF6 (UniProtKB/Swiss-Prot),   P58735 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176345   ⟸   XM_017320856
- Peptide Label: isoform X1
- UniProtKB: Q80WF6 (UniProtKB/Swiss-Prot),   P58735 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030110272   ⟸   XM_030254412
- Peptide Label: isoform X1
- UniProtKB: P58735 (UniProtKB/Swiss-Prot),   Q80WF6 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110274   ⟸   XM_030254414
- Peptide Label: isoform X1
- UniProtKB: P58735 (UniProtKB/Swiss-Prot),   Q80WF6 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110271   ⟸   XM_030254411
- Peptide Label: isoform X1
- UniProtKB: P58735 (UniProtKB/Swiss-Prot),   Q80WF6 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110273   ⟸   XM_030254413
- Peptide Label: isoform X1
- UniProtKB: P58735 (UniProtKB/Swiss-Prot),   Q80WF6 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000051561   ⟸   ENSMUST00000051757
RefSeq Acc Id: ENSMUSP00000113185   ⟸   ENSMUST00000119270
RefSeq Acc Id: ENSMUSP00000131282   ⟸   ENSMUST00000163328
RefSeq Acc Id: ENSMUSP00000116540   ⟸   ENSMUST00000136227
RefSeq Acc Id: XP_036020974   ⟸   XM_036165081
- Peptide Label: isoform X1
- UniProtKB: P58735 (UniProtKB/Swiss-Prot),   Q80WF6 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020975   ⟸   XM_036165082
- Peptide Label: isoform X1
- UniProtKB: P58735 (UniProtKB/Swiss-Prot),   Q80WF6 (UniProtKB/Swiss-Prot),   Q3UPH6 (UniProtKB/TrEMBL),   Q8R4W9 (UniProtKB/TrEMBL)
Protein Domains
SLC26A/SulP transporter   STAS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P58735-F1-model_v2 AlphaFold P58735 1-704 view protein structure

Promoters
RGD ID:6887482
Promoter ID:EPDNEW_M7192
Type:multiple initiation site
Name:Slc26a1_1
Description:Mus musculus solute carrier family 26 , member 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385108,674,796 - 108,674,856EPDNEW
RGD ID:6838363
Promoter ID:MM_KWN:43305
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000066776,   UC008YOX.1,   UC008YOY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365109,103,861 - 109,104,537 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385894 AgrOrtholog
Ensembl Genes ENSMUSG00000046959 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051757 ENTREZGENE
  ENSMUST00000051757.14 UniProtKB/Swiss-Prot
  ENSMUST00000119270 ENTREZGENE
  ENSMUST00000119270.2 UniProtKB/TrEMBL
  ENSMUST00000136227.2 UniProtKB/TrEMBL
  ENSMUST00000163328 ENTREZGENE
  ENSMUST00000163328.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.750.24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro S04_transporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SLC26A/SulP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SLC26A/SulP_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAS_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:231583 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2385894 ENTREZGENE
NCBI Gene 231583 ENTREZGENE
PANTHER PTHR11814 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11814:SF31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam STAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sulfate_transp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc26a1 PhenoGen
PROSITE SLC26A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52091 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z4W4_MOUSE UniProtKB/TrEMBL
  G5E8U1 ENTREZGENE, UniProtKB/TrEMBL
  P58735 ENTREZGENE
  Q3UPH6 ENTREZGENE, UniProtKB/TrEMBL
  Q80WF6 ENTREZGENE
  Q8R4W9 ENTREZGENE, UniProtKB/TrEMBL
  S26A1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q80WF6 UniProtKB/Swiss-Prot