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Gene Ontology Annotations
Gene Ontology AnnotationsBiological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | anatomical structure formation involved in morphogenesis | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:2154554|PMID:11719201 | MGI | MGI:MGI:2154554 PMID:11719201 | axon guidance | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:3714686|PMID:17493606 | MGI | MGI:MGI:3714686 PMID:17493606 | brain development | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:2679162|PMID:14566948 | MGI | MGI:MGI:2679162 PMID:14566948 | brain development | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:3050930|PMID:15295034 | MGI | MGI:MGI:3050930 PMID:15295034 | dorsal/ventral pattern formation | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:2679162|PMID:14566948 | MGI | MGI:MGI:2679162 PMID:14566948 | dorsal/ventral pattern formation | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:1930361|PMID:11165475 | MGI | MGI:MGI:1930361 PMID:11165475 | mesoderm development | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:1889796|PMID:9247336 | MGI | MGI:MGI:1889796 PMID:9247336 | negative regulation of transcription regulatory region DNA binding | | IGI | MGI:MGI:97168 | 2290270 | MGI:MGI:1278140|PMID:9697309 | MGI | MGI:MGI:1278140 PMID:9697309 | nervous system development | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:1889796|PMID:9247336 | MGI | MGI:MGI:1889796 PMID:9247336 | neural tube closure | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:2154554|PMID:11719201 | MGI | MGI:MGI:2154554 PMID:11719201 | neurogenesis | | IDA | | 2290270 | MGI:MGI:3778596|PMID:18184563 | MGI | MGI:MGI:3778596 PMID:18184563 | neuron differentiation | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:3044864|PMID:15173589 | MGI | MGI:MGI:3044864 PMID:15173589 | positive regulation of transcription from RNA polymerase II promoter | | IGI | MGI:MGI:1342291 | 2290270 | MGI:MGI:1341452|PMID:10431247 | MGI | MGI:MGI:1341452 PMID:10431247 | positive regulation of transcription, DNA-dependent | | IDA | | 2290270 | MGI:MGI:5009206|PMID:10593900 | UniProtKB | MGI:MGI:5009206 PMID:10593900 | regulation of transcription, DNA-dependent | | IEA | InterPro:IPR017970|InterPro:IPR001356 | 2290270 | MGI:MGI:2152098 | UniProtKB | MGI:MGI:2152098 | regulation of transcription, DNA-dependent | | IEA | UniProtKB-KW:KW-0805 | 2290270 | MGI:MGI:1354194 | UniProtKB | MGI:MGI:1354194 | telencephalon development | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:1930361|PMID:11165475 | MGI | MGI:MGI:1930361 PMID:11165475 | telencephalon development | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:3714686|PMID:17493606 | MGI | MGI:MGI:3714686 PMID:17493606 | telencephalon development | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:2154554|PMID:11719201 | MGI | MGI:MGI:2154554 PMID:11719201 | telencephalon regionalization | | IMP | MGI:MGI:1890208 | 2290270 | MGI:MGI:2154554|PMID:11719201 | MGI | MGI:MGI:2154554 PMID:11719201 | telencephalon regionalization | | IGI | MGI:MGI:88180|MGI:MGI:88177 | 2290270 | MGI:MGI:2154554|PMID:11719201 | MGI | MGI:MGI:2154554 PMID:11719201 | transcription, DNA-dependent | | IEA | UniProtKB-KW:KW-0804 | 2290270 | MGI:MGI:1354194 | UniProtKB | MGI:MGI:1354194 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Phenotype Annotations
Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Phenotype Annotations
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References - curated| 1. |
MGD data from the GO Consortium |
| 2. |
MGD IEA |
| 3. |
Porter FD, etal., Development 1997 Aug;124(15):2935-44. |
| 4. |
RGD automated import pipeline |
| 5. |
RGD automated import pipeline for gene-chemical interactions |
| 6. |
Xu Y, etal., Proc Natl Acad Sci U S A 1993 Jan 1;90(1):227-31. |
References - uncurated| PubMed | 10021340 |
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RGD Disease Portals| Lhx2 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| Lhx2 (Mus musculus) |
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| LHX2 (Homo sapiens) |
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| Lhx2 (Rattus norvegicus) |
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Position Markers| Lhx2 |
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QTLs in Region (Mouse Genome Assembly Build 37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NM_010710 | (Get FASTA) | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AAHY01015387 | (Get FASTA) | Search GEO for Microarray Profiles |
| AF124734 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK053572 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL929186 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC055741 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC086638 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BX813320 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_010710 | |||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_034840 | |||||||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_034840 | (Get FASTA) |
| GenBank Protein | AAD20012 | (Get FASTA) |
| AAH55741 | (Get FASTA) | |
| BAC35432 | (Get FASTA) | |
| Q9Z0S2 | (Get FASTA) |
Promoters| RGD ID: | 6831691 | ||||||||||
| Promoter ID: | MM_KWN:29008 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | BoneMarrow_0Hour, Brain, Kidney, Lung | ||||||||||
| Transcripts: | OTTMUST00000030849 | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| Ensembl Genes | ENSMUSG00000000247 | ENTREZGENE |
| Ensembl Protein | ENSMUSP00000000253 | ENTREZGENE |
| Ensembl Transcript | ENSMUST00000000253 | ENTREZGENE |
| Entrez Gene | 16870 | ENTREZGENE |
| Gene3D-CATH | Homeodomain-rel | UniProtKB/Swiss-Prot |
| Znf_LIM | UniProtKB/Swiss-Prot | |
| Germonline | ENSMUSG00000000247 | |
| HomoloGene Group ID | 55848 | ENTREZGENE |
| InterPro | Homeobox | UniProtKB/Swiss-Prot |
| Homeobox_CS | UniProtKB/Swiss-Prot | |
| Homeodomain-like | UniProtKB/Swiss-Prot | |
| Znf_LIM | UniProtKB/Swiss-Prot | |
| IPI | IPI00129385 | UniProtKB/Swiss-Prot |
| IPI00752717 | UniProtKB/TrEMBL | |
| IPI00753092 | UniProtKB/TrEMBL | |
| IPI00895104 | UniProtKB/TrEMBL | |
| KEGG Report | mmu:16870 | ENTREZGENE, UniProtKB/Swiss-Prot |
| MGD | MGI:96785 | ENTREZGENE |
| Pfam | Homeobox | UniProtKB/Swiss-Prot |
| LIM | UniProtKB/Swiss-Prot | |
| PROSITE | HOMEOBOX_1 | UniProtKB/Swiss-Prot |
| HOMEOBOX_2 | UniProtKB/Swiss-Prot | |
| LIM_DOMAIN_1 | UniProtKB/Swiss-Prot | |
| LIM_DOMAIN_2 | UniProtKB/Swiss-Prot | |
| SMART | HOX | UniProtKB/Swiss-Prot |
| LIM | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | Homeodomain_like | UniProtKB/Swiss-Prot |
| UniGene | Mm.142856 | ENTREZGENE |
| UniProt | F6R2W7_MOUSE | UniProtKB/TrEMBL |
| F6SM03_MOUSE | UniProtKB/TrEMBL | |
| F6Z9H5_MOUSE | UniProtKB/TrEMBL | |
| H3BKI3_MOUSE | UniProtKB/TrEMBL | |
| LHX2_MOUSE | UniProtKB/Swiss-Prot | |
| Q543C6_MOUSE | UniProtKB/TrEMBL |
| More on Lhx2 | |
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Entrez Gene |
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Ensembl Gene |
![]() | Genome Browser |
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MGI Report |
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NCBI Map Viewer |
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Vista |
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Vista + UCSC |
| RGD Object Information | |
| RGD ID: | 733850 |
| Created: | 2004-01-12 |
| Species: | Mus musculus |
| Last Modified: | 2013-04-30 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




