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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 17alpha-ethynylestradiol | affects expression | ISO | RGD:733653 | 6480464 | Ethinyl Estradiol affects the expression of ICA1 mRNA | CTD | PMID:17555576 | 17alpha-ethynylestradiol | multiple interactions | ISO | RGD:733653 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ICA1 mRNA | CTD | PMID:17942748 | 17alpha-ethynylestradiol | increases expression | ISO | RGD:733653 | 6480464 | Ethinyl Estradiol results in increased expression of ICA1 mRNA | CTD | PMID:17942748 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:733653 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ICA1 mRNA | CTD | PMID:17942748 | 2-acetamidofluorene | increases expression | ISO | RGD:621465 | 6480464 | 2-Acetylaminofluorene results in increased expression of ICA1 mRNA | CTD | PMID:21784091 | 2-methylcholine | affects expression | EXP | | 6480464 | beta-methylcholine affects the expression of ICA1 mRNA | CTD | PMID:21179406 | aflatoxin B1 | decreases expression | EXP | | 6480464 | Aflatoxin B1 results in decreased expression of ICA1 mRNA | CTD | PMID:22100608 | benzo[a]pyrene | decreases expression | ISO | RGD:733653 | 6480464 | Benzo(a)pyrene results in decreased expression of ICA1 mRNA | CTD | PMID:21715664 | benzo[a]pyrene | multiple interactions | ISO | RGD:733653 | 6480464 | [Benzo(a)pyrene co-treated with XPA gene mutant form co-treated with TRP53 gene mutant form] results in decreased expression of ICA1 mRNA | CTD | PMID:21715664 | choline | multiple interactions | ISO | RGD:733653 | 6480464 | [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of ICA1 mRNA | CTD | PMID:20938992 | coumestrol | multiple interactions | EXP | | 6480464 | [Coumestrol co-treated with 2,3-bis(3'-hydroxybenzyl)butyrolactone] results in decreased expression of ICA1 mRNA | CTD | PMID:19167446 | cyclophosphamide | affects response to substance | ISO | RGD:733653 | 6480464 | ICA1 protein affects the susceptibility to Cyclophosphamide | CTD | PMID:11751995 | elemental selenium | multiple interactions | EXP | | 6480464 | [Selenium co-treated with Vitamin E] results in decreased expression of ICA1 mRNA | CTD | PMID:19244175 | elemental selenium | increases expression | EXP | | 6480464 | Selenium results in increased expression of ICA1 mRNA | CTD | PMID:19244175 | folic acid | multiple interactions | ISO | RGD:733653 | 6480464 | [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of ICA1 mRNA | CTD | PMID:20938992 | indole-3-methanol | affects expression | ISO | RGD:621465 | 6480464 | indole-3-carbinol affects the expression of ICA1 mRNA | CTD | PMID:21396975 | L-methionine | multiple interactions | ISO | RGD:733653 | 6480464 | [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of ICA1 mRNA | CTD | PMID:20938992 | menadione | affects expression | EXP | | 6480464 | Vitamin K 3 affects the expression of ICA1 mRNA | CTD | PMID:20044591 | N-nitrosodiethylamine | multiple interactions | ISO | RGD:621465 | 6480464 | [Diethylnitrosamine co-treated with beta-Naphthoflavone] results in increased expression of ICA1 mRNA | CTD | PMID:18164116 | paracetamol | affects expression | ISO | RGD:733653 | 6480464 | Acetaminophen affects the expression of ICA1 mRNA | CTD | PMID:17562736 | paraoxon | increases expression | EXP | | 6480464 | Paraoxon results in increased expression of ICA1 mRNA | CTD | PMID:17223147 | perfluorooctanoic acid | increases expression | ISO | RGD:621465 | 6480464 | perfluorooctanoic acid results in increased expression of ICA1 mRNA | CTD | PMID:19162173 | pirinixic acid | increases expression | ISO | RGD:621465 | 6480464 | pirinixic acid results in increased expression of ICA1 mRNA | CTD | PMID:19162173 | selenium atom | multiple interactions | EXP | | 6480464 | [Selenium co-treated with Vitamin E] results in decreased expression of ICA1 mRNA | CTD | PMID:19244175 | selenium atom | increases expression | EXP | | 6480464 | Selenium results in increased expression of ICA1 mRNA | CTD | PMID:19244175 | tetrachloromethane | affects expression | ISO | RGD:733653 | 6480464 | Carbon Tetrachloride affects the expression of ICA1 mRNA | CTD | PMID:17484886 | tetrachloromethane | increases expression | ISO | RGD:621465 | 6480464 | Carbon Tetrachloride results in increased expression of ICA1 mRNA | CTD | PMID:21784091 | thioacetamide | increases expression | ISO | RGD:621465 | 6480464 | Thioacetamide results in increased expression of ICA1 mRNA | CTD | PMID:21784091 | trimellitic anhydride | decreases expression | ISO | RGD:733653 | 6480464 | trimellitic anhydride results in decreased expression of ICA1 mRNA | CTD | PMID:19042947 | vanadyl sulfate | decreases expression | EXP | | 6480464 | vanadyl sulfate results in decreased expression of ICA1 mRNA | CTD | PMID:16330358 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | Type I diabetes mellitus |
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | Type I diabetes mellitus |
References - curated
References - uncurated
RGD Disease Portals| ICA1 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| ICA1 (Homo sapiens) |
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| Ica1 (Mus musculus) |
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| Ica1 (Rattus norvegicus) |
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Position Markers| GDB:3755069 |
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| ICA1__6438 |
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| D7S2321 |
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| STS-H15167 |
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| GDB:1318390 |
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QTLs in Region (Human Genome Assembly GRCh37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| RefSeq Acc Id: | NM_004968 | ||||||||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||||||||
| Protein Acc Id: | NP_004959 | ||||||||||||||||||||||||||||||
| Position: |
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| RefSeq Acc Id: | NM_022307 | ||||||||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||||||||
| Protein Acc Id: | NP_071682 | ||||||||||||||||||||||||||||||
| Position: |
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| RefSeq Acc Id: | NM_001136020 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_001129492 | |||||||||||||||||||||||||
| Position: |
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Protein Sequences
Promoters| RGD ID: | 6813197 | ||||||||||
| Promoter ID: | HG_ACW:71449 | ||||||||||
| Type: | Non-CpG | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | K562, Lymphoblastoid | ||||||||||
| Transcripts: | ICA1.OAPR07 | ||||||||||
| Position: |
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| RGD ID: | 7208143 | ||||||||||
| Promoter ID: | EPDNEW_H9818 | ||||||||||
| Type: | initiation region | ||||||||||
| Name: | ICA1_3 | ||||||||||
| Description: | islet cell autoantigen 1, 69kDa | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||||
| Position: |
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| RGD ID: | 6805790 | ||||||||||
| Promoter ID: | HG_KWN:56311 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | HeLa_S3, K562 | ||||||||||
| Transcripts: | ENST00000406470, ENST00000407906, NM_004968, NM_022307, OTTHUMT00000324888, OTTHUMT00000324889, OTTHUMT00000324890, OTTHUMT00000324891, OTTHUMT00000324893, UC003SRN.2, UC003SRP.2, UC003SRR.1, UC010KTS.1 | ||||||||||
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| RGD ID: | 6860912 | ||||||||||
| Promoter ID: | EPDNEW_H3621 | ||||||||||
| Type: | initiation region | ||||||||||
| Name: | CLASP1_3 | ||||||||||
| Description: | cytoplasmic linker associated protein 1 | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| COSMIC | ICA1 | COSMIC |
| Ensembl Genes | ENSG00000003147 | ENTREZGENE |
| Ensembl Protein | ENSP00000379908 | ENTREZGENE |
| ENSP00000385305 | ENTREZGENE | |
| ENSP00000385651 | ENTREZGENE | |
| Ensembl Transcript | ENST00000396675 | ENTREZGENE |
| ENST00000401396 | ENTREZGENE | |
| ENST00000406470 | ENTREZGENE | |
| Entrez Gene | 3382 | ENTREZGENE |
| Gene3D-CATH | 270.60 | UniProtKB/Swiss-Prot |
| Germonline | ENSG00000003147 | |
| HGNC ID | 5343 | ENTREZGENE |
| HomoloGene Group ID | 7777 | ENTREZGENE |
| HPRD ID | 00971 | ENTREZGENE |
| InterPro | AH/BAR-dom | UniProtKB/Swiss-Prot |
| Arfaptin_homology_dom | UniProtKB/Swiss-Prot | |
| Islet_autoAg_Ica1/Ica1-like | UniProtKB/Swiss-Prot | |
| Islet_autoAg_Ica1_C | UniProtKB/Swiss-Prot | |
| IPI | IPI00007470 | UniProtKB/TrEMBL |
| IPI00011606 | UniProtKB/Swiss-Prot | |
| IPI00185760 | UniProtKB/TrEMBL | |
| IPI00872203 | UniProtKB/TrEMBL | |
| IPI00893325 | UniProtKB/TrEMBL | |
| IPI00893640 | UniProtKB/TrEMBL | |
| IPI00893785 | UniProtKB/TrEMBL | |
| IPI00893787 | UniProtKB/TrEMBL | |
| IPI00894031 | UniProtKB/TrEMBL | |
| IPI00894090 | UniProtKB/TrEMBL | |
| IPI00894458 | UniProtKB/TrEMBL | |
| IPI00900288 | UniProtKB/TrEMBL | |
| KEGG Report | hsa:3382 | ENTREZGENE, UniProtKB/Swiss-Prot |
| OMIM | 147625 | OMIM |
| PANTHER | PTHR10164 | UniProtKB/Swiss-Prot |
| Pfam | Arfaptin | UniProtKB/Swiss-Prot |
| ICA69 | UniProtKB/Swiss-Prot | |
| PharmGKB | PA29591 | PharmGKB |
| PROSITE | PS50870 | UniProtKB/Swiss-Prot |
| SMART | Arfaptin | UniProtKB/Swiss-Prot |
| UniGene | Hs.487561 | ENTREZGENE |
| UniProt | B3FTQ2_HUMAN | UniProtKB/TrEMBL |
| B9ZVM7_HUMAN | UniProtKB/TrEMBL | |
| C9IZC7_HUMAN | UniProtKB/TrEMBL | |
| C9J3Y4_HUMAN | UniProtKB/TrEMBL | |
| C9J8Y3_HUMAN | UniProtKB/TrEMBL | |
| E7ENI6_HUMAN | UniProtKB/TrEMBL | |
| E9PDL4_HUMAN | UniProtKB/TrEMBL | |
| F8WET5_HUMAN | UniProtKB/TrEMBL | |
| ICA69_HUMAN | UniProtKB/Swiss-Prot | |
| Q6LCR0_HUMAN | UniProtKB/TrEMBL | |
| Q6LCT9_HUMAN | UniProtKB/TrEMBL | |
| Q96HG3_HUMAN | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2011-08-16 | ICA1 | islet cell autoantigen 1, 69kDa | ICA1 | islet cell autoantigen 1, 69kDa | Symbol and/or name change | 39860 | APPROVED |
| More on ICA1 | |||
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Entrez Gene | ||
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Ensembl Gene | ||
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HGNC Report | ||
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NCBI Map Viewer | ||
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Vista | ||
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Vista + UCSC | ||
| RGD Object Information | |
| RGD ID: | 733652 |
| Created: | 2004-01-12 |
| Species: | Homo sapiens |
| Last Modified: | 2013-03-06 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




