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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:620677 | 6480464 | AHR protein alternative form affects the reaction [Tetrachlorodibenzodioxin results in decreased expression of LTC4S mRNA] | CTD | PMID:21215274 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:733492 | 6480464 | Tetrachlorodibenzodioxin affects the expression of LTC4S mRNA | CTD | PMID:21570461 | 2,3,7,8-tetrachlorodibenzodioxine | decreases expression | ISO | RGD:620677 | 6480464 | Tetrachlorodibenzodioxin results in decreased expression of LTC4S mRNA | CTD | PMID:21215274 | acetohydrazide | decreases expression | ISO | RGD:733492 | 6480464 | acetylhydrazine results in decreased expression of LTC4S mRNA | CTD | PMID:15282401 | acetylsalicylic acid | affects response to substance | EXP | | 6480464 | LTC4S polymorphism affects the susceptibility to Aspirin | CTD | PMID:16433794 more ... | acetylsalicylic acid | affects response to substance | EXP | | 6480464 | LTC4S polymorphism affects the susceptibility to Aspirin | CTD | PMID:19862937 more ... | acetylsalicylic acid | affects response to substance | EXP | | 6480464 | LTC4S affects the susceptibility to Aspirin | CTD | PMID:19767084 | acetylsalicylic acid | affects response to substance | EXP | | 6480464 | LTC4S polymorphism affects the susceptibility to Aspirin | CTD | PMID:15100686 more ... | acetylsalicylic acid | affects response to substance | EXP | | 6480464 | LTC4S polymorphism affects the susceptibility to Aspirin | CTD | PMID:15100686 | acetylsalicylic acid | affects response to substance | EXP | | 6480464 | LTC4S gene SNP affects the susceptibility to Aspirin | CTD | PMID:20485159 | acetylsalicylic acid | affects response to substance | EXP | | 6480464 | LTC4S polymorphism affects the susceptibility to Aspirin | CTD | PMID:15100686 more ... | ammonium chloride | affects expression | ISO | RGD:620677 | 6480464 | Ammonium Chloride affects the expression of LTC4S mRNA | CTD | PMID:16483693 | benzo[a]pyrene | multiple interactions | ISO | RGD:733492 | 6480464 | AHR protein affects the reaction [Benzo(a)pyrene affects the expression of LTC4S mRNA] | CTD | PMID:22228805 | benzo[a]pyrene | increases expression | ISO | RGD:733492 | 6480464 | Benzo(a)pyrene results in increased expression of LTC4S mRNA | CTD | PMID:21964900 PMID:22610609 | bucladesine | decreases secretion | EXP | | 6480464 | Bucladesine results in decreased secretion of LTC4S protein | CTD | PMID:16083514 | clofibric acid | multiple interactions | ISO | RGD:620677 | 6480464 | [Diethylnitrosamine co-treated with Clofibric Acid] affects the expression of LTC4S mRNA | CTD | PMID:17602206 | dexamethasone | increases expression | EXP | | 6480464 | Dexamethasone results in increased expression of LTC4S mRNA | CTD | PMID:12891383 | diarsenic trioxide | decreases expression | EXP | | 6480464 | arsenic trioxide results in decreased expression of LTC4S mRNA | CTD | PMID:20458559 | diarsenic trioxide | increases expression | EXP | | 6480464 | arsenic trioxide results in increased expression of LTC4S mRNA | CTD | PMID:15761015 | diethyl maleate | decreases expression | ISO | RGD:620677 | 6480464 | diethyl maleate results in decreased expression of LTC4S mRNA | CTD | PMID:21161181 | histamine | decreases response to substance | EXP | | 6480464 | LTC4S polymorphism results in decreased susceptibility to Histamine | CTD | PMID:19862937 | leukotriene C4 | affects chemical synthesis | EXP | | 6480464 | LTC4S protein affects the chemical synthesis of Leukotriene C4 | CTD | PMID:10666225 | montelukast | affects response to substance | EXP | | 6480464 | LTC4S gene SNP affects the susceptibility to montelukast | CTD | PMID:16293801 | N-nitrosodiethylamine | multiple interactions | ISO | RGD:620677 | 6480464 | [Diethylnitrosamine co-treated with beta-Naphthoflavone] results in decreased expression of LTC4S mRNA | CTD | PMID:18164116 | N-nitrosodiethylamine | multiple interactions | ISO | RGD:620677 | 6480464 | [Diethylnitrosamine co-treated with Clofibric Acid] affects the expression of LTC4S mRNA | CTD | PMID:17602206 | rolipram | decreases secretion | EXP | | 6480464 | Rolipram results in decreased secretion of LTC4S protein | CTD | PMID:16083514 | theophylline | decreases secretion | EXP | | 6480464 | Theophylline results in decreased secretion of LTC4S protein | CTD | PMID:16083514 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | Arachidonic acid metabolism |
| Metabolic pathways | |
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | Arachidonic acid metabolism |
| Metabolic pathways | |
References - curated| 1. |
Jame AJ, etal., Clin Exp Allergy. 2007 Jun;37(6):880-92. |
| 2. |
KEGG |
| 3. |
Ma KF, etal., World J Gastroenterol. 2008 May 7;14(17):2748-56. |
| 4. |
Okubo M, etal., Glia. 2010 Apr;58(5):599-610. |
| 5. |
Petric R, etal., Biochim Biophys Acta. 1995 Jan 20;1254(2):207-15. |
| 6. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 7. |
RGD automated import pipeline for gene-chemical interactions |
| 8. |
RGD Automated Pipelines |
References - uncurated| PubMed | 10436863 |
| 10591082 | |
| 10673221 | |
| 10970815 | |
| 11034337 | |
| 11770699 | |
| 11934880 | |
| 12063521 | |
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| 17460547 | |
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| 19703064 | |
| 19862937 | |
| 19956635 | |
| 20128419 | |
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| 8898379 | |
| 9092565 | |
| 9113110 | |
| 9435249 |
RGD Disease Portals| LTC4S has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| LTC4S (Homo sapiens) |
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| Ltc4s (Mus musculus) |
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| Ltc4s (Rattus norvegicus) |
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QTLs in Region (Human Genome Assembly GRCh37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NG_028161 | (Get FASTA) | Search GEO for Microarray Profiles |
| NM_145867 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | ABBA01010042 | (Get FASTA) | Search GEO for Microarray Profiles |
| AC008393 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AI480325 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK312033 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AMYH01015958 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC029498 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BI597970 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BI819419 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH471165 | (Get FASTA) | Search GEO for Microarray Profiles | |
| U09353 | (Get FASTA) | Search GEO for Microarray Profiles | |
| U11552 | (Get FASTA) | Search GEO for Microarray Profiles | |
| U50136 | (Get FASTA) | Search GEO for Microarray Profiles | |
| U62025 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_145867 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_665874 | |||||||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_665874 | (Get FASTA) |
| GenBank Protein | AAA20467 | (Get FASTA) |
| AAA50555 | (Get FASTA) | |
| AAB06723 | (Get FASTA) | |
| AAC50476 | (Get FASTA) | |
| AAH29498 | (Get FASTA) | |
| ABM81888 | (Get FASTA) | |
| ABM85060 | (Get FASTA) | |
| BAG34970 | (Get FASTA) | |
| EAW53796 | (Get FASTA) | |
| EAW53797 | (Get FASTA) | |
| EAW53798 | (Get FASTA) | |
| EAW53799 | (Get FASTA) | |
| Q16873 | (Get FASTA) |
Promoters| RGD ID: | 6859760 | ||||||||||
| Promoter ID: | EPDNEW_H3045 | ||||||||||
| Type: | initiation region | ||||||||||
| Name: | ABCG5_1 | ||||||||||
| Description: | ATP-binding cassette, sub-family G , member 5 | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||||
| Position: |
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| RGD ID: | 6803149 | ||||||||||
| Promoter ID: | HG_KWN:51995 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, K562, Lymphoblastoid, NB4 | ||||||||||
| Transcripts: | ENST00000401985, NM_145867, OTTHUMT00000317537, OTTHUMT00000317539, OTTHUMT00000317540 | ||||||||||
| Position: |
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| RGD ID: | 6812770 | ||||||||||
| Promoter ID: | HG_ACW:66840 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, HeLa_S3, K562, Lymphoblastoid, NB4 | ||||||||||
| Transcripts: | LTC4S.AAPR07-UNSPLICED, LTC4S.FAPR07, LTC4S.IAPR07 | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| COSMIC | LTC4S | COSMIC |
| Ensembl Genes | ENSG00000213316 | ENTREZGENE |
| Ensembl Protein | ENSP00000292596 | ENTREZGENE |
| Ensembl Transcript | ENST00000292596 | ENTREZGENE |
| Entrez Gene | 4056 | ENTREZGENE |
| Gene3D-CATH | G3DSA:1.20.120.550 | UniProtKB/Swiss-Prot |
| Germonline | ENSG00000161021 | |
| HGNC ID | 6719 | ENTREZGENE |
| HomoloGene Group ID | 7406 | ENTREZGENE |
| HPRD ID | 02004 | ENTREZGENE |
| InterPro | 5_LipOase_AP | UniProtKB/Swiss-Prot |
| FLAP/GST2/LTC4S_CS | UniProtKB/Swiss-Prot | |
| MAPEG-like_dom | UniProtKB/Swiss-Prot | |
| Membr-assoc_MAPEG | UniProtKB/Swiss-Prot | |
| KEGG Report | hsa:4056 | ENTREZGENE, UniProtKB/Swiss-Prot |
| OMIM | 246530 | OMIM |
| 614037 | OMIM | |
| Pfam | MAPEG | UniProtKB/Swiss-Prot |
| PharmGKB | LTC4S | RGD, PharmGKB |
| PRINTS | 5LPOXGNASEAP | UniProtKB/Swiss-Prot |
| PROSITE | FLAP_GST2_LTC4S | UniProtKB/Swiss-Prot |
| UniGene | Hs.706741 | ENTREZGENE |
| UniProt | B5MCC3_HUMAN | UniProtKB/TrEMBL |
| D6RJA1_HUMAN | UniProtKB/TrEMBL | |
| LTC4S_HUMAN | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2011-08-16 | LTC4S | leukotriene C4 synthase | LTC4S | leukotriene C4 synthase | Symbol and/or name change | 39860 | APPROVED |
| More on LTC4S | |||
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Entrez Gene | ||
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Ensembl Gene | ||
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HGNC Report | ||
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NCBI Map Viewer | ||
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Vista | ||
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Vista + UCSC | ||
| RGD Object Information | |
| RGD ID: | 733491 |
| Created: | 2004-01-12 |
| Species: | Homo sapiens |
| Last Modified: | 2013-05-14 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




