SLCO3A1 (solute carrier organic anion transporter family member 3A1) - Rat Genome Database

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Gene: SLCO3A1 (solute carrier organic anion transporter family member 3A1) Homo sapiens
Analyze
Symbol: SLCO3A1
Name: solute carrier organic anion transporter family member 3A1
RGD ID: 733471
HGNC Page HGNC:10952
Description: Enables organic anion transmembrane transporter activity and prostaglandin transmembrane transporter activity. Involved in positive regulation of protein phosphorylation and prostaglandin transport. Located in basal plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ40478; OATP-D; OATP-RP3; OATP3A1; OATPD; OATPRP3; organic anion transporter polypeptide-related protein 3; organic anion-transporting polypeptide D; PGE1 transporter; SLC21A11; sodium-independent organic anion transporter D; solute carrier family 21 (organic anion transporter), member 11; solute carrier family 21 member 11; solute carrier organic anion transporter family, member 3A1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381591,853,708 - 92,172,435 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1591,853,708 - 92,172,435 (+)EnsemblGRCh38hg38GRCh38
GRCh371592,396,938 - 92,715,665 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361590,197,950 - 90,507,783 (+)NCBINCBI36Build 36hg18NCBI36
Build 341590,197,949 - 90,507,783NCBI
Celera1568,809,625 - 69,127,530 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1568,535,792 - 68,852,636 (+)NCBIHuRef
CHM1_11592,238,177 - 92,556,655 (+)NCBICHM1_1
T2T-CHM13v2.01589,615,458 - 89,934,870 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-Iodothyronamine  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amosite asbestos  (ISO)
antirheumatic drug  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
benzylpenicillin  (EXP)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (EXP)
chlordecone  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (EXP)
dibutyl phthalate  (ISO)
diuron  (ISO)
doxorubicin  (EXP)
endosulfan  (ISO)
epoxiconazole  (ISO)
estrone 3-sulfate  (EXP)
ethanol  (ISO)
fenvalerate  (ISO)
flavonoids  (ISO)
fluorescein (lactone form)  (EXP)
folic acid  (ISO)
fonofos  (EXP)
gentamycin  (ISO)
glyphosate  (ISO)
indoxyl sulfate  (EXP)
isoprenaline  (ISO)
L-methionine  (ISO)
lead(0)  (EXP)
lipopolysaccharide  (EXP)
manganese(II) chloride  (ISO)
methoxychlor  (ISO)
microcystin-LR  (ISO)
Muraglitazar  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
parathion  (EXP)
potassium chromate  (EXP)
progesterone  (EXP)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
silicon dioxide  (ISO)
simvastatin hydroxy acid  (EXP)
sodium arsenite  (EXP)
sulforaphane  (EXP)
terbufos  (EXP)
Tesaglitazar  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
troglitazone  (ISO)
undecane  (ISO)
valproic acid  (EXP)
vancomycin  (ISO)
vinclozolin  (ISO)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10873595   PMID:12477932   PMID:12495658   PMID:12542534   PMID:14579113   PMID:14631946   PMID:14702039   PMID:15489334   PMID:15553237   PMID:16971491   PMID:18521091   PMID:18821565  
PMID:19129463   PMID:19330903   PMID:20379614   PMID:21278488   PMID:21486766   PMID:21873635   PMID:22076464   PMID:22377092   PMID:23251661   PMID:23725790   PMID:24159190   PMID:24665060  
PMID:24945726   PMID:26349991   PMID:28065597   PMID:29117863   PMID:30063921   PMID:30280653   PMID:31871319   PMID:32296183   PMID:34079125   PMID:34971708   PMID:35307651  


Genomics

Comparative Map Data
SLCO3A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381591,853,708 - 92,172,435 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1591,853,708 - 92,172,435 (+)EnsemblGRCh38hg38GRCh38
GRCh371592,396,938 - 92,715,665 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361590,197,950 - 90,507,783 (+)NCBINCBI36Build 36hg18NCBI36
Build 341590,197,949 - 90,507,783NCBI
Celera1568,809,625 - 69,127,530 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1568,535,792 - 68,852,636 (+)NCBIHuRef
CHM1_11592,238,177 - 92,556,655 (+)NCBICHM1_1
T2T-CHM13v2.01589,615,458 - 89,934,870 (+)NCBIT2T-CHM13v2.0
Slco3a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39773,925,166 - 74,204,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl773,925,167 - 74,204,528 (-)EnsemblGRCm39 Ensembl
GRCm38774,275,418 - 74,554,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl774,275,419 - 74,554,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv37781,420,304 - 81,699,666 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36774,148,931 - 74,428,293 (-)NCBIMGSCv36mm8
Celera771,722,299 - 72,002,017 (-)NCBICelera
Cytogenetic Map7D1NCBI
cM Map742.95NCBI
Slco3a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81137,516,037 - 137,797,836 (-)NCBIGRCr8
mRatBN7.21128,106,232 - 128,388,043 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,106,228 - 128,387,925 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1136,062,978 - 136,336,526 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,233,107 - 143,506,677 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01136,101,551 - 136,374,041 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01135,790,854 - 136,073,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1135,790,810 - 136,073,540 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01136,793,300 - 137,070,909 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41129,580,126 - 130,077,110 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11129,658,468 - 130,155,453 (-)NCBI
Celera1120,235,201 - 120,503,802 (-)NCBICelera
Cytogenetic Map1q31NCBI
Slco3a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541620,186,940 - 20,483,958 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541620,186,940 - 20,483,844 (+)NCBIChiLan1.0ChiLan1.0
SLCO3A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21681,399,080 - 81,720,058 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11585,099,736 - 85,420,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01570,537,924 - 70,858,714 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11589,735,202 - 90,055,251 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1589,739,022 - 90,054,678 (+)Ensemblpanpan1.1panPan2
SLCO3A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1347,927,280 - 48,233,666 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl347,927,664 - 48,233,703 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha350,628,974 - 50,868,877 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0348,346,093 - 48,649,188 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl348,346,095 - 48,649,226 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1347,847,277 - 48,150,531 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0348,078,812 - 48,381,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0348,420,025 - 48,723,118 (-)NCBIUU_Cfam_GSD_1.0
Slco3a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640135,491,779 - 135,786,720 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648310,547,687 - 10,778,752 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648310,554,049 - 10,778,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLCO3A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl786,777,920 - 87,103,309 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1786,777,919 - 87,103,316 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2792,719,394 - 93,045,275 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLCO3A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12910,418,938 - 10,735,503 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605935,952,514 - 36,274,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slco3a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476811,536,168 - 11,855,331 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476811,537,311 - 11,855,224 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLCO3A1
38 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q26.1-26.3(chr15:89679237-101978958)x3 copy number gain See cases [RCV000052354] Chr15:89679237..101978958 [GRCh38]
Chr15:90222468..102519161 [GRCh37]
Chr15:88023472..100336684 [NCBI36]
Chr15:15q26.1-26.3		 pathogenic
GRCh38/hg38 15q24.2-26.3(chr15:75307767-101723215)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|See cases [RCV000052346] Chr15:75307767..101723215 [GRCh38]
Chr15:75600108..102263418 [GRCh37]
Chr15:73387161..100080941 [NCBI36]
Chr15:15q24.2-26.3		 pathogenic
GRCh38/hg38 15q24.3-26.3(chr15:77543797-101843411)x3 copy number gain See cases [RCV000052347] Chr15:77543797..101843411 [GRCh38]
Chr15:77836139..102383614 [GRCh37]
Chr15:75623194..100201137 [NCBI36]
Chr15:15q24.3-26.3		 pathogenic
GRCh38/hg38 15q25.2-26.3(chr15:84169153-101904929)x3 copy number gain See cases [RCV000052352] Chr15:84169153..101904929 [GRCh38]
Chr15:84837905..102445132 [GRCh37]
Chr15:82628909..100262655 [NCBI36]
Chr15:15q25.2-26.3		 pathogenic
GRCh38/hg38 15q26.1(chr15:92170113-93438995)x1 copy number loss See cases [RCV000053225] Chr15:92170113..93438995 [GRCh38]
Chr15:92713343..93982224 [GRCh37]
Chr15:90514347..91783228 [NCBI36]
Chr15:15q26.1		 pathogenic
NM_001145044.1(SLCO3A1):c.1480C>T (p.Leu494=) single nucleotide variant Malignant melanoma [RCV000062954] Chr15:92128457 [GRCh38]
Chr15:92671687 [GRCh37]
Chr15:90472691 [NCBI36]
Chr15:15q26.1		 not provided
GRCh38/hg38 15q25.2-26.3(chr15:83711377-101843270)x3 copy number gain See cases [RCV000135858] Chr15:83711377..101843270 [GRCh38]
Chr15:84380129..102383473 [GRCh37]
Chr15:82171133..100200996 [NCBI36]
Chr15:15q25.2-26.3		 pathogenic
GRCh38/hg38 15q25.3-26.3(chr15:87904735-101843270)x3 copy number gain See cases [RCV000135568] Chr15:87904735..101843270 [GRCh38]
Chr15:88447966..102383473 [GRCh37]
Chr15:86248970..100200996 [NCBI36]
Chr15:15q25.3-26.3		 pathogenic
GRCh38/hg38 15q25.2-26.3(chr15:82859676-101810992)x3 copy number gain See cases [RCV000136849] Chr15:82859676..101810992 [GRCh38]
Chr15:83528428..102351195 [GRCh37]
Chr15:81325482..100168718 [NCBI36]
Chr15:15q25.2-26.3		 pathogenic
GRCh38/hg38 15q26.1(chr15:91853990-92049731)x3 copy number gain See cases [RCV000136766] Chr15:91853990..92049731 [GRCh38]
Chr15:92397220..92592961 [GRCh37]
Chr15:90198224..90393965 [NCBI36]
Chr15:15q26.1		 benign
GRCh38/hg38 15q25.3-26.3(chr15:85826665-101920998)x4 copy number gain See cases [RCV000137264] Chr15:85826665..101920998 [GRCh38]
Chr15:86369896..102461201 [GRCh37]
Chr15:84170900..100278724 [NCBI36]
Chr15:15q25.3-26.3		 pathogenic
GRCh38/hg38 15q25.3-26.3(chr15:85397539-101888909)x3 copy number gain See cases [RCV000141899] Chr15:85397539..101888909 [GRCh38]
Chr15:85940770..102429112 [GRCh37]
Chr15:83741774..100246635 [NCBI36]
Chr15:15q25.3-26.3		 pathogenic
GRCh38/hg38 15q22.2-26.3(chr15:59828460-101920998)x3 copy number gain See cases [RCV000142915] Chr15:59828460..101920998 [GRCh38]
Chr15:60120659..102461201 [GRCh37]
Chr15:57907951..100278724 [NCBI36]
Chr15:15q22.2-26.3		 pathogenic
GRCh38/hg38 15q23-26.3(chr15:72154949-101920998)x3 copy number gain See cases [RCV000143019] Chr15:72154949..101920998 [GRCh38]
Chr15:72447290..102461201 [GRCh37]
Chr15:70234344..100278724 [NCBI36]
Chr15:15q23-26.3		 pathogenic
GRCh38/hg38 15q26.1-26.3(chr15:88676575-98364743)x3 copy number gain See cases [RCV000142727] Chr15:88676575..98364743 [GRCh38]
Chr15:89219806..98907972 [GRCh37]
Chr15:87020810..96725495 [NCBI36]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q24.2-26.3(chr15:76061144-102429112)x3 copy number gain See cases [RCV000511332] Chr15:76061144..102429112 [GRCh37]
Chr15:15q24.2-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:92197136-102354857)x1 copy number loss See cases [RCV000240535] Chr15:92197136..102354857 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q22.31-26.3(chr15:64637227-102509910)x3 copy number gain See cases [RCV000240602] Chr15:64637227..102509910 [GRCh37]
Chr15:15q22.31-26.3		 pathogenic
GRCh37/hg19 15q26.1(chr15:91935924-92575841)x3 copy number gain See cases [RCV000599510] Chr15:91935924..92575841 [GRCh37]
Chr15:15q26.1		 uncertain significance
GRCh37/hg19 15q22.1-26.3(chr15:59297293-102480888)x3 copy number gain not provided [RCV000415836] Chr15:59297293..102480888 [GRCh37]
Chr15:15q22.1-26.3		 likely pathogenic
GRCh37/hg19 15q25.2-26.3(chr15:85089467-102495441)x3 copy number gain See cases [RCV000449119] Chr15:85089467..102495441 [GRCh37]
Chr15:15q25.2-26.3		 pathogenic
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4 copy number gain See cases [RCV000447123] Chr15:41745084..102354798 [GRCh37]
Chr15:15q15.1-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:90346994-102354798) copy number loss See cases [RCV000447603] Chr15:90346994..102354798 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:89924847-102429112)x3 copy number gain See cases [RCV000445978] Chr15:89924847..102429112 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q25.1-26.3(chr15:80648093-102429112)x3 copy number gain See cases [RCV000445705] Chr15:80648093..102429112 [GRCh37]
Chr15:15q25.1-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4 copy number gain See cases [RCV000447765] Chr15:20733395..102511616 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q25.3-26.3(chr15:86148286-102511616)x3 copy number gain See cases [RCV000448044] Chr15:86148286..102511616 [GRCh37]
Chr15:15q25.3-26.3		 pathogenic
GRCh37/hg19 15q25.3-26.1(chr15:88295992-94215607)x1 copy number loss See cases [RCV000448680] Chr15:88295992..94215607 [GRCh37]
Chr15:15q25.3-26.1		 pathogenic
GRCh37/hg19 15q26.1(chr15:91589712-93889459)x1 copy number loss See cases [RCV000448390] Chr15:91589712..93889459 [GRCh37]
Chr15:15q26.1		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112) copy number gain See cases [RCV000512019] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q25.3-26.3(chr15:86899001-98734014)x3 copy number gain See cases [RCV000511629] Chr15:86899001..98734014 [GRCh37]
Chr15:15q25.3-26.3		 likely pathogenic
Single allele duplication not provided [RCV000677926] Chr15:31115047..102354857 [GRCh37]
Chr15:15q13.2-26.3		 pathogenic
GRCh37/hg19 15q23-26.3(chr15:71329220-102270758)x3 copy number gain not provided [RCV000683703] Chr15:71329220..102270758 [GRCh37]
Chr15:15q23-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:89743929-102429112)x3 copy number gain not provided [RCV000683718] Chr15:89743929..102429112 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q24.3-26.3(chr15:77479244-102429112)x3 copy number gain not provided [RCV000683710] Chr15:77479244..102429112 [GRCh37]
Chr15:15q24.3-26.3		 pathogenic
GRCh37/hg19 15q25.3-26.3(chr15:88385150-102461162)x3 copy number gain not provided [RCV000738864] Chr15:88385150..102461162 [GRCh37]
Chr15:15q25.3-26.3		 pathogenic
GRCh37/hg19 15q26.1(chr15:92577382-92579182)x1 copy number loss not provided [RCV000738867] Chr15:92577382..92579182 [GRCh37]
Chr15:15q26.1		 benign
GRCh37/hg19 15q26.1(chr15:92663630-92676660)x1 copy number loss not provided [RCV000738868] Chr15:92663630..92676660 [GRCh37]
Chr15:15q26.1		 benign
GRCh37/hg19 15q26.1(chr15:92666293-92676660)x1 copy number loss not provided [RCV000738869] Chr15:92666293..92676660 [GRCh37]
Chr15:15q26.1		 benign
GRCh37/hg19 15q26.1(chr15:92671919-92676435)x1 copy number loss not provided [RCV000738870] Chr15:92671919..92676435 [GRCh37]
Chr15:15q26.1		 benign
GRCh37/hg19 15q26.1(chr15:92671919-92676660)x1 copy number loss not provided [RCV000738871] Chr15:92671919..92676660 [GRCh37]
Chr15:15q26.1		 benign
GRCh37/hg19 15q26.1(chr15:92684742-93165596)x3 copy number gain not provided [RCV000738872] Chr15:92684742..93165596 [GRCh37]
Chr15:15q26.1		 benign
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3 copy number gain not provided [RCV000751156] Chr15:20071673..102461162 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:90277151-102376761)x3 copy number gain not provided [RCV000751387] Chr15:90277151..102376761 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q26.1(chr15:92477878-92537617)x1 copy number loss not provided [RCV000751396] Chr15:92477878..92537617 [GRCh37]
Chr15:15q26.1		 benign
GRCh37/hg19 15q26.1(chr15:92575841-92579182)x1 copy number loss not provided [RCV000751397] Chr15:92575841..92579182 [GRCh37]
Chr15:15q26.1		 benign
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3 copy number gain not provided [RCV000751155] Chr15:20016811..102493540 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q26.1(chr15:92686402-93172602)x3 copy number gain not provided [RCV000762713] Chr15:92686402..93172602 [GRCh37]
Chr15:15q26.1		 likely benign
GRCh37/hg19 15q25.3-26.3(chr15:87189245-102429112)x1 copy number loss not provided [RCV001006718] Chr15:87189245..102429112 [GRCh37]
Chr15:15q25.3-26.3		 pathogenic
GRCh37/hg19 15q26.1-26.3(chr15:90288175-102429112)x3 copy number gain not provided [RCV000846885] Chr15:90288175..102429112 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q26.1(chr15:91229877-93677014)x1 copy number loss not provided [RCV000847986] Chr15:91229877..93677014 [GRCh37]
Chr15:15q26.1		 pathogenic
NM_013272.4(SLCO3A1):c.1512+23_1512+34del microsatellite not provided [RCV000954749] Chr15:92128495..92128506 [GRCh38]
Chr15:92671725..92671736 [GRCh37]
Chr15:15q26.1		 benign
NM_013272.4(SLCO3A1):c.1689-6A>G single nucleotide variant not provided [RCV000964009] Chr15:92150944 [GRCh38]
Chr15:92694174 [GRCh37]
Chr15:15q26.1		 benign
GRCh37/hg19 15q26.1-26.3(chr15:92335751-102399741)x1 copy number loss not provided [RCV001537887] Chr15:92335751..102399741 [GRCh37]
Chr15:15q26.1-26.3		 pathogenic
GRCh37/hg19 15q25.3-26.3(chr15:86962053-102531392)x1 copy number loss See cases [RCV001263026] Chr15:86962053..102531392 [GRCh37]
Chr15:15q25.3-26.3		 pathogenic
GRCh37/hg19 15q25.3-26.2(chr15:88465861-94411846)x1 copy number loss not provided [RCV001795547] Chr15:88465861..94411846 [GRCh37]
Chr15:15q25.3-26.2		 pathogenic
GRCh37/hg19 15q26.1(chr15:89520451-93926491)x1 copy number loss not provided [RCV001827973] Chr15:89520451..93926491 [GRCh37]
Chr15:15q26.1		 pathogenic
NM_013272.4(SLCO3A1):c.647-33581T>C single nucleotide variant Vascular endothelial growth factor (VEGF) inhibitor response [RCV002254032] Chr15:92061300 [GRCh38]
Chr15:92604530 [GRCh37]
Chr15:15q26.1		 association
NM_013272.4(SLCO3A1):c.472G>T (p.Asp158Tyr) single nucleotide variant Inborn genetic diseases [RCV002879660] Chr15:91916284 [GRCh38]
Chr15:92459514 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.1832A>G (p.Gln611Arg) single nucleotide variant Inborn genetic diseases [RCV002682970] Chr15:92162834 [GRCh38]
Chr15:92706064 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.1895C>T (p.Ala632Val) single nucleotide variant Inborn genetic diseases [RCV002906233] Chr15:92162897 [GRCh38]
Chr15:92706127 [GRCh37]
Chr15:15q26.1		 uncertain significance
GRCh37/hg19 15q24.3-26.3(chr15:77512817-102035027)x3 copy number gain not provided [RCV002475797] Chr15:77512817..102035027 [GRCh37]
Chr15:15q24.3-26.3		 pathogenic
NM_013272.4(SLCO3A1):c.843G>C (p.Leu281Phe) single nucleotide variant Inborn genetic diseases [RCV002910517] Chr15:92104376 [GRCh38]
Chr15:92647606 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_001145044.1(SLCO3A1):c.2074A>T (p.Ser692Cys) single nucleotide variant Inborn genetic diseases [RCV002781658] Chr15:92171857 [GRCh38]
Chr15:92715087 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.1554G>C (p.Glu518Asp) single nucleotide variant Inborn genetic diseases [RCV002955761] Chr15:92147025 [GRCh38]
Chr15:92690255 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.1912T>G (p.Phe638Val) single nucleotide variant Inborn genetic diseases [RCV002915546] Chr15:92162914 [GRCh38]
Chr15:92706144 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.518C>T (p.Thr173Ile) single nucleotide variant Inborn genetic diseases [RCV002954817] Chr15:91916330 [GRCh38]
Chr15:92459560 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.1977C>G (p.His659Gln) single nucleotide variant Inborn genetic diseases [RCV002804888] Chr15:92162979 [GRCh38]
Chr15:92706209 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.464C>T (p.Ser155Leu) single nucleotide variant Inborn genetic diseases [RCV002961493] Chr15:91916276 [GRCh38]
Chr15:92459506 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.1831C>A (p.Gln611Lys) single nucleotide variant Inborn genetic diseases [RCV002656992] Chr15:92162833 [GRCh38]
Chr15:92706063 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.487C>A (p.Pro163Thr) single nucleotide variant Inborn genetic diseases [RCV002656877] Chr15:91916299 [GRCh38]
Chr15:92459529 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.886G>A (p.Ala296Thr) single nucleotide variant Inborn genetic diseases [RCV003174996] Chr15:92104419 [GRCh38]
Chr15:92647649 [GRCh37]
Chr15:15q26.1		 uncertain significance
GRCh37/hg19 15q25.2-26.3(chr15:84228005-102264590)x3 copy number gain not provided [RCV003222840] Chr15:84228005..102264590 [GRCh37]
Chr15:15q25.2-26.3		 pathogenic
NM_013272.4(SLCO3A1):c.1766C>T (p.Pro589Leu) single nucleotide variant Inborn genetic diseases [RCV003204275] Chr15:92162768 [GRCh38]
Chr15:92705998 [GRCh37]
Chr15:15q26.1		 uncertain significance
GRCh37/hg19 15q24.1-26.3(chr15:75165490-102520892)x3 copy number gain See cases [RCV003329502] Chr15:75165490..102520892 [GRCh37]
Chr15:15q24.1-26.3		 pathogenic
NM_013272.4(SLCO3A1):c.1520C>T (p.Thr507Met) single nucleotide variant Inborn genetic diseases [RCV003360205] Chr15:92146991 [GRCh38]
Chr15:92690221 [GRCh37]
Chr15:15q26.1		 uncertain significance
GRCh37/hg19 15q26.1(chr15:92679630-92773669)x1 copy number loss not provided [RCV003483251] Chr15:92679630..92773669 [GRCh37]
Chr15:15q26.1		 uncertain significance
NM_013272.4(SLCO3A1):c.1380A>G (p.Ala460=) single nucleotide variant not provided [RCV003395043] Chr15:92128357 [GRCh38]
Chr15:92671587 [GRCh37]
Chr15:15q26.1		 likely benign
NM_013272.4(SLCO3A1):c.1678A>G (p.Ile560Val) single nucleotide variant not provided [RCV003395044] Chr15:92147149 [GRCh38]
Chr15:92690379 [GRCh37]
Chr15:15q26.1		 likely benign
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR218-1hsa-miR-218-1-3pMirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248

Predicted Target Of
Summary Value
Count of predictions:3751
Count of miRNA genes:1261
Interacting mature miRNAs:1648
Transcripts:ENST00000318445, ENST00000424469, ENST00000553304, ENST00000553653, ENST00000555111, ENST00000555210, ENST00000555513, ENST00000555549, ENST00000555769, ENST00000555892, ENST00000556649, ENST00000564072, ENST00000566477
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D15S652  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,517,367 - 92,517,651UniSTSGRCh37
Build 361590,318,371 - 90,318,655RGDNCBI36
Celera1568,929,313 - 68,929,597RGD
Cytogenetic Map15qUniSTS
Cytogenetic Map15q26UniSTS
Cytogenetic Map15q25-q26UniSTS
Cytogenetic Map15q25.3-q26.2UniSTS
HuRef1568,656,170 - 68,656,454UniSTS
Marshfield Genetic Map1590.02RGD
Marshfield Genetic Map1590.02UniSTS
deCODE Assembly Map1599.92UniSTS
RH99134  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,708,884 - 92,709,034UniSTSGRCh37
Build 361590,509,888 - 90,510,038RGDNCBI36
Celera1569,120,749 - 69,120,899RGD
Cytogenetic Map15q26UniSTS
HuRef1568,845,855 - 68,846,005UniSTS
GeneMap99-GB4 RH Map15330.98UniSTS
RH99257  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,715,382 - 92,715,502UniSTSGRCh37
Build 361590,516,386 - 90,516,506RGDNCBI36
Celera1569,127,247 - 69,127,367RGD
Cytogenetic Map15q26UniSTS
HuRef1568,852,353 - 68,852,473UniSTS
GeneMap99-GB4 RH Map15331.03UniSTS
G59895  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,714,187 - 92,714,313UniSTSGRCh37
Build 361590,515,191 - 90,515,317RGDNCBI36
Celera1569,126,052 - 69,126,178RGD
Cytogenetic Map15q26UniSTS
HuRef1568,851,158 - 68,851,284UniSTS
TNG Radiation Hybrid Map1537310.0UniSTS
SHGC-104662  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,430,469 - 92,430,762UniSTSGRCh37
Build 361590,231,473 - 90,231,766RGDNCBI36
Celera1568,842,513 - 68,842,806RGD
Cytogenetic Map15q26UniSTS
HuRef1568,569,072 - 68,569,365UniSTS
TNG Radiation Hybrid Map1536955.0UniSTS
D15S671  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,458,830 - 92,459,060UniSTSGRCh37
Build 361590,259,834 - 90,260,064RGDNCBI36
Celera1568,870,875 - 68,871,105RGD
Cytogenetic Map15q26UniSTS
HuRef1568,597,434 - 68,597,664UniSTS
SHGC-171522  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,634,729 - 92,635,071UniSTSGRCh37
Build 361590,435,733 - 90,436,075RGDNCBI36
Celera1569,046,700 - 69,047,042RGD
Cytogenetic Map15q26UniSTS
HuRef1568,773,943 - 68,774,285UniSTS
TNG Radiation Hybrid Map1537331.0UniSTS
SHGC-82159  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,497,506 - 92,497,832UniSTSGRCh37
Build 361590,298,510 - 90,298,836RGDNCBI36
Celera1568,909,563 - 68,909,889RGD
Cytogenetic Map15q26UniSTS
HuRef1568,636,131 - 68,636,457UniSTS
TNG Radiation Hybrid Map1536944.0UniSTS
SLC21A11_1798  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,706,079 - 92,706,840UniSTSGRCh37
Build 361590,507,083 - 90,507,844RGDNCBI36
Celera1569,117,945 - 69,118,705RGD
HuRef1568,843,050 - 68,843,811UniSTS
WI-18111  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,707,143 - 92,707,229UniSTSGRCh37
Build 361590,508,147 - 90,508,233RGDNCBI36
Celera1569,119,008 - 69,119,094RGD
Cytogenetic Map15q26UniSTS
HuRef1568,844,114 - 68,844,200UniSTS
GeneMap99-GB4 RH Map15330.98UniSTS
Whitehead-RH Map15352.1UniSTS
A009V33  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,706,542 - 92,706,736UniSTSGRCh37
Build 361590,507,546 - 90,507,740RGDNCBI36
Celera1569,118,408 - 69,118,602RGD
Cytogenetic Map15q26UniSTS
HuRef1568,843,513 - 68,843,707UniSTS
GeneMap99-GB4 RH Map15330.24UniSTS
NCBI RH Map15707.4UniSTS
WIAF-2077  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,714,171 - 92,714,334UniSTSGRCh37
Build 361590,515,175 - 90,515,338RGDNCBI36
Celera1569,126,036 - 69,126,199RGD
Cytogenetic Map15q26UniSTS
HuRef1568,851,142 - 68,851,305UniSTS
GeneMap99-GB4 RH Map15330.98UniSTS
NCBI RH Map15712.9UniSTS
D15S1415E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,585,298 - 92,585,389UniSTSGRCh37
Build 361590,386,302 - 90,386,393RGDNCBI36
Celera1568,997,292 - 68,997,383RGD
HuRef1568,724,468 - 68,724,559UniSTS
D15S1417E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,562,364 - 92,562,480UniSTSGRCh37
Build 361590,363,368 - 90,363,484RGDNCBI36
Celera1568,974,338 - 68,974,454RGD
HuRef1568,701,184 - 68,701,300UniSTS
D15S1421E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,639,665 - 92,639,783UniSTSGRCh37
Build 361590,440,669 - 90,440,787RGDNCBI36
Celera1569,051,636 - 69,051,754RGD
HuRef1568,778,878 - 68,778,996UniSTS
D15S1423E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,591,103 - 92,591,238UniSTSGRCh37
Build 361590,392,107 - 90,392,242RGDNCBI36
Celera1569,003,082 - 69,003,217RGD
HuRef1568,730,329 - 68,730,464UniSTS
D15S1426E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,572,520 - 92,572,637UniSTSGRCh37
Build 361590,373,524 - 90,373,641RGDNCBI36
Celera1568,984,508 - 68,984,625RGD
HuRef1568,711,363 - 68,711,480UniSTS
D15S1450E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,587,403 - 92,587,502UniSTSGRCh37
Build 361590,388,407 - 90,388,506RGDNCBI36
Celera1568,999,397 - 68,999,496RGD
HuRef1568,726,573 - 68,726,672UniSTS
SLCO3A1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,706,037 - 92,706,275UniSTSGRCh37
Celera1569,117,903 - 69,118,141UniSTS
HuRef1568,843,008 - 68,843,246UniSTS
G32886  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371592,706,542 - 92,706,736UniSTSGRCh37
Celera1569,118,408 - 69,118,602UniSTS
Cytogenetic Map15q26UniSTS
HuRef1568,843,513 - 68,843,707UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 304 2067 812 35 928 27 2730 402 1280 139 799 1466 19 997 1516
Low 2099 920 894 572 653 423 1618 1786 2445 276 641 124 153 207 1272 2
Below cutoff 24 13 9 285 9 6 3 4 2 9 16 2 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001145044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_135775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005254891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_931795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB031050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC104020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC104236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC116903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC135996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF187816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF205074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL109695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ969229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB508493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ515841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY004505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF456117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000318445   ⟹   ENSP00000320634
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1591,853,708 - 92,165,903 (+)Ensembl
RefSeq Acc Id: ENST00000424469   ⟹   ENSP00000387846
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1591,853,856 - 92,172,435 (+)Ensembl
RefSeq Acc Id: ENST00000553304   ⟹   ENSP00000450559
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1591,854,121 - 91,916,378 (+)Ensembl
RefSeq Acc Id: ENST00000553653
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1591,853,723 - 92,151,216 (+)Ensembl
RefSeq Acc Id: ENST00000555111
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1591,854,025 - 91,908,759 (+)Ensembl
RefSeq Acc Id: ENST00000555210   ⟹   ENSP00000451780
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1592,126,186 - 92,162,946 (+)Ensembl
RefSeq Acc Id: ENST00000555513
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1592,153,563 - 92,163,208 (+)Ensembl
RefSeq Acc Id: ENST00000555549
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1592,097,930 - 92,163,546 (+)Ensembl
RefSeq Acc Id: ENST00000555769
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1591,854,336 - 92,155,269 (+)Ensembl
RefSeq Acc Id: ENST00000555892   ⟹   ENSP00000451287
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1592,126,184 - 92,171,847 (+)Ensembl
RefSeq Acc Id: ENST00000556649
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1591,941,318 - 92,104,537 (+)Ensembl
RefSeq Acc Id: ENST00000564072
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1592,161,575 - 92,163,546 (+)Ensembl
RefSeq Acc Id: ENST00000566477
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1592,170,872 - 92,172,435 (+)Ensembl
RefSeq Acc Id: NM_001145044   ⟹   NP_001138516
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381591,853,708 - 92,172,435 (+)NCBI
GRCh371592,396,938 - 92,715,665 (+)RGD
Celera1568,809,625 - 69,127,530 (+)RGD
HuRef1568,535,792 - 68,852,636 (+)ENTREZGENE
CHM1_11592,238,177 - 92,556,655 (+)NCBI
T2T-CHM13v2.01589,615,458 - 89,934,870 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013272   ⟹   NP_037404
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381591,853,708 - 92,165,903 (+)NCBI
GRCh371592,396,938 - 92,715,665 (+)RGD
Build 361590,197,950 - 90,507,783 (+)NCBI Archive
Celera1568,809,625 - 69,127,530 (+)RGD
HuRef1568,535,792 - 68,852,636 (+)ENTREZGENE
CHM1_11592,238,177 - 92,550,127 (+)NCBI
T2T-CHM13v2.01589,615,458 - 89,928,338 (+)NCBI
Sequence:
RefSeq Acc Id: NR_135775
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381591,854,304 - 92,155,319 (+)NCBI
CHM1_11592,238,769 - 92,539,541 (+)NCBI
T2T-CHM13v2.01589,616,054 - 89,917,754 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001138516   ⟸   NM_001145044
- Peptide Label: isoform 2
- UniProtKB: Q9UIG8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_037404   ⟸   NM_013272
- Peptide Label: isoform 1
- UniProtKB: Q9BW73 (UniProtKB/Swiss-Prot),   C6G486 (UniProtKB/Swiss-Prot),   B3KUR7 (UniProtKB/Swiss-Prot),   B3KPY5 (UniProtKB/Swiss-Prot),   A8K4A7 (UniProtKB/Swiss-Prot),   Q9GZV2 (UniProtKB/Swiss-Prot),   Q9UIG8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000451287   ⟸   ENST00000555892
RefSeq Acc Id: ENSP00000451780   ⟸   ENST00000555210
RefSeq Acc Id: ENSP00000387846   ⟸   ENST00000424469
RefSeq Acc Id: ENSP00000450559   ⟸   ENST00000553304
RefSeq Acc Id: ENSP00000320634   ⟸   ENST00000318445
Protein Domains
Kazal-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9UIG8-F1-model_v2 AlphaFold Q9UIG8 1-710 view protein structure

Promoters
RGD ID:6792592
Promoter ID:HG_KWN:22364
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001145044,   OTTHUMT00000313529,   UC002BQZ.1,   UC010BOC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361590,197,386 - 90,198,152 (+)MPROMDB
RGD ID:6810840
Promoter ID:HG_ACW:28125
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:SLCO3A1.JAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 361590,285,301 - 90,285,801 (+)MPROMDB
RGD ID:6810839
Promoter ID:HG_ACW:28143
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:SLCO3A1.EAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 361590,505,201 - 90,505,701 (+)MPROMDB
RGD ID:7230595
Promoter ID:EPDNEW_H21043
Type:initiation region
Name:SLCO3A1_1
Description:solute carrier organic anion transporter family member 3A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H21044  EPDNEW_H21045  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381591,853,710 - 91,853,770EPDNEW
RGD ID:7230597
Promoter ID:EPDNEW_H21044
Type:initiation region
Name:SLCO3A1_3
Description:solute carrier organic anion transporter family member 3A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H21043  EPDNEW_H21045  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381591,853,870 - 91,853,930EPDNEW
RGD ID:7230599
Promoter ID:EPDNEW_H21045
Type:initiation region
Name:SLCO3A1_2
Description:solute carrier organic anion transporter family member 3A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H21043  EPDNEW_H21044  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381591,854,306 - 91,854,366EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:10952 AgrOrtholog
COSMIC SLCO3A1 COSMIC
Ensembl Genes ENSG00000176463 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000318445 ENTREZGENE
  ENST00000318445.11 UniProtKB/Swiss-Prot
  ENST00000424469 ENTREZGENE
  ENST00000424469.2 UniProtKB/Swiss-Prot
  ENST00000553304.1 UniProtKB/TrEMBL
  ENST00000555210.1 UniProtKB/TrEMBL
  ENST00000555769 ENTREZGENE
  ENST00000555892.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000176463 GTEx
HGNC ID HGNC:10952 ENTREZGENE
Human Proteome Map SLCO3A1 Human Proteome Map
InterPro Kazal_dom UniProtKB/Swiss-Prot
  Kazal_dom_sf UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:28232 UniProtKB/Swiss-Prot
NCBI Gene 28232 ENTREZGENE
OMIM 612435 OMIM
PANTHER PTHR11388 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 3A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Kazal_2 UniProtKB/Swiss-Prot
  OATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA35837 PharmGKB
PROSITE KAZAL_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100895 UniProtKB/Swiss-Prot
  SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K4A7 ENTREZGENE
  B3KPY5 ENTREZGENE
  B3KUR7 ENTREZGENE
  C6G486 ENTREZGENE
  G3V2B7_HUMAN UniProtKB/TrEMBL
  G3V3K4_HUMAN UniProtKB/TrEMBL
  H0YJM0_HUMAN UniProtKB/TrEMBL
  Q9BW73 ENTREZGENE
  Q9GZV2 ENTREZGENE
  Q9UIG8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A8K4A7 UniProtKB/Swiss-Prot
  B3KPY5 UniProtKB/Swiss-Prot
  B3KUR7 UniProtKB/Swiss-Prot
  C6G486 UniProtKB/Swiss-Prot
  Q9BW73 UniProtKB/Swiss-Prot
  Q9GZV2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 SLCO3A1  solute carrier organic anion transporter family member 3A1    solute carrier organic anion transporter family, member 3A1  Symbol and/or name change 5135510 APPROVED