Mchr1 (melanin-concentrating hormone receptor 1) - Rat Genome Database

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Gene: Mchr1 (melanin-concentrating hormone receptor 1) Mus musculus
Analyze
Symbol: Mchr1
Name: melanin-concentrating hormone receptor 1
RGD ID: 733422
MGI Page MGI
Description: Enables signaling receptor binding activity. Predicted to be involved in several processes, including neuropeptide signaling pathway; positive regulation of calcium ion transport; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Located in ciliary membrane; neuron projection; and non-motile cilium. Is expressed in brain and lung. Human ortholog(s) of this gene implicated in morbid obesity. Orthologous to human MCHR1 (melanin concentrating hormone receptor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW049955; G protein coupled receptor 24; G-protein coupled receptor 24; Gpr; Gpr24; Gpr24-9; Gpr24-9 protein coupled receptor; MCH receptor 1; MCH-1; MCH-1R; Mch1; Mch1r; MCHR; SLC-1; somatostatin receptor-like protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,119,700 - 81,123,165 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,119,700 - 81,123,165 (+)EnsemblGRCm39 Ensembl
GRCm381581,235,499 - 81,238,964 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,235,499 - 81,238,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371581,065,929 - 81,069,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,063,029 - 81,065,367 (+)NCBIMGSCv36mm8
Celera1583,352,799 - 83,356,252 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Association of melanin-concentrating hormone receptor 1 5' polymorphism with early-onset extreme obesity. Bell CG, etal., Diabetes. 2005 Oct;54(10):3049-55.
2. Increases in melanin-concentrating hormone and MCH receptor levels in the hypothalamus of dietary-obese rats. Elliott JC, etal., Brain Res Mol Brain Res. 2004 Sep 28;128(2):150-9.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11471062   PMID:11867747   PMID:12036292   PMID:12072376   PMID:12477932   PMID:15093132   PMID:15130877  
PMID:15147966   PMID:15544841   PMID:15590649   PMID:15607734   PMID:15673672   PMID:15772353   PMID:15845622   PMID:15890773   PMID:15926931   PMID:15950311   PMID:15988472   PMID:16141072  
PMID:16141073   PMID:16505236   PMID:16602821   PMID:16839618   PMID:16934771   PMID:17270288   PMID:17519948   PMID:17550369   PMID:17901120   PMID:17996928   PMID:18000809   PMID:18281019  
PMID:18334641   PMID:18380672   PMID:18719666   PMID:18784290   PMID:18848539   PMID:19342492   PMID:19521566   PMID:20411353   PMID:20592115   PMID:20709149   PMID:21074567   PMID:21873635  
PMID:22139371   PMID:23024261   PMID:23029470   PMID:23267345   PMID:23351594   PMID:23605441   PMID:23708141   PMID:24056699   PMID:24797473   PMID:24924345   PMID:24952961   PMID:26053317  
PMID:27044354   PMID:27617778   PMID:27633558   PMID:28154160   PMID:28706241   PMID:28888943   PMID:28966976   PMID:29335480   PMID:31121161   PMID:31155350   PMID:31668382   PMID:32530066  
PMID:32788646   PMID:33197527   PMID:33649390   PMID:33741721   PMID:34124835   PMID:34665407   PMID:35311242   PMID:35653384   PMID:38187761  


Genomics

Comparative Map Data
Mchr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,119,700 - 81,123,165 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,119,700 - 81,123,165 (+)EnsemblGRCm39 Ensembl
GRCm381581,235,499 - 81,238,964 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,235,499 - 81,238,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371581,065,929 - 81,069,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,063,029 - 81,065,367 (+)NCBIMGSCv36mm8
Celera1583,352,799 - 83,356,252 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.02NCBI
MCHR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,679,484 - 40,682,812 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,679,273 - 40,682,812 (+)EnsemblGRCh38hg38GRCh38
GRCh372241,075,488 - 41,078,816 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,405,128 - 39,408,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 342239,399,736 - 39,403,318NCBI
Celera2224,878,864 - 24,882,500 (+)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2224,037,016 - 24,040,650 (+)NCBIHuRef
CHM1_12241,035,201 - 41,038,835 (+)NCBICHM1_1
T2T-CHM13v2.02241,151,449 - 41,154,777 (+)NCBIT2T-CHM13v2.0
Mchr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87114,641,721 - 114,644,913 (+)NCBIGRCr8
mRatBN7.27112,761,554 - 112,764,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7112,761,554 - 112,764,032 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7114,524,098 - 114,526,580 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07116,747,649 - 116,750,131 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07116,717,002 - 116,719,482 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07122,456,846 - 122,459,324 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,456,799 - 122,459,960 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07122,432,538 - 122,435,016 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47119,557,141 - 119,559,619 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17119,591,370 - 119,593,849 (+)NCBI
Celera7109,080,262 - 109,082,740 (+)NCBICelera
Cytogenetic Map7q34NCBI
Mchr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,343,759 - 26,347,520 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541326,343,771 - 26,347,374 (+)NCBIChiLan1.0ChiLan1.0
MCHR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22350,512,835 - 50,516,718 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12253,212,725 - 53,216,607 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02221,577,190 - 21,581,062 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12239,673,698 - 39,677,517 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2239,673,698 - 39,677,517 (+)Ensemblpanpan1.1panPan2
MCHR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11024,526,687 - 24,560,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1024,526,693 - 24,559,836 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1024,462,281 - 24,464,655 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01025,276,788 - 25,311,181 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1025,276,794 - 25,280,056 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,990,613 - 24,992,985 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01025,312,293 - 25,314,664 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01025,486,758 - 25,489,135 (-)NCBIUU_Cfam_GSD_1.0
Mchr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049458,143,469 - 8,147,147 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364921,153,651 - 1,157,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364921,153,895 - 1,156,980 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCHR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,735,825 - 7,738,701 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.157,735,752 - 7,752,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.254,916,103 - 4,918,861 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MCHR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11923,240,509 - 23,245,553 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1923,241,487 - 23,243,950 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045102,341,335 - 102,346,097 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mchr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247527,801,948 - 7,805,635 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247527,801,867 - 7,805,791 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mchr1
104 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:252
Count of miRNA genes:218
Interacting mature miRNAs:228
Transcripts:ENSMUST00000166855
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse

Markers in Region
AW049955  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381581,238,533 - 81,238,619UniSTSGRCm38
MGSCv371581,068,963 - 81,069,049UniSTSGRCm37
Celera1583,355,821 - 83,355,907UniSTS
Cytogenetic Map15E1UniSTS
Whitehead/MRC_RH15713.32UniSTS
Mchr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E1UniSTS
cM Map1538.02UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000166855   ⟹   ENSMUSP00000126191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,119,700 - 81,123,165 (+)Ensembl
GRCm38.p6 Ensembl1581,235,499 - 81,238,964 (+)Ensembl
RefSeq Acc Id: NM_145132   ⟹   NP_660114
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,119,700 - 81,123,165 (+)NCBI
GRCm381581,235,499 - 81,238,964 (+)ENTREZGENE
MGSCv371581,065,929 - 81,069,394 (+)RGD
Celera1583,352,799 - 83,356,252 (+)RGD
cM Map15 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_660114   ⟸   NM_145132
- UniProtKB: Q3UY93 (UniProtKB/Swiss-Prot),   Q8K3M8 (UniProtKB/Swiss-Prot),   Q8JZL2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000126191   ⟸   ENSMUST00000166855

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8JZL2-F1-model_v2 AlphaFold Q8JZL2 1-353 view protein structure

Promoters
RGD ID:6826186
Promoter ID:MM_KWN:19149
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000057957,   NM_145132
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361581,065,811 - 81,066,311 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2180756 AgrOrtholog
Ensembl Genes ENSMUSG00000050164 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000166855 ENTREZGENE
  ENSMUST00000166855.3 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  MCH1_rcpt UniProtKB/Swiss-Prot
  MCH_rcpt UniProtKB/Swiss-Prot
KEGG Report mmu:207911 UniProtKB/Swiss-Prot
MGD MGI:2180756 ENTREZGENE
NCBI Gene 207911 ENTREZGENE
PANTHER NEUROPEPTIDES RECEPTOR UniProtKB/Swiss-Prot
  PTHR24229:SF91 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen Mchr1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  MCH1RECEPTOR UniProtKB/Swiss-Prot
  MCHRECEPTOR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt MCHR1_MOUSE UniProtKB/Swiss-Prot
  Q3UY93 ENTREZGENE
  Q8JZL2 ENTREZGENE
  Q8K3M8 ENTREZGENE
UniProt Secondary Q3UY93 UniProtKB/Swiss-Prot
  Q8K3M8 UniProtKB/Swiss-Prot