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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | ISO | RGD:3188 | 6480464 | Tetrachlorodibenzodioxin results in increased expression of NOTCH2 mRNA | CTD | PMID:18796159 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:736047 | 6480464 | Tetrachlorodibenzodioxin affects the expression of NOTCH2 mRNA | CTD | PMID:21570461 | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | ISO | RGD:3188 | 6480464 | Tetrachlorodibenzodioxin results in increased expression of NOTCH2 mRNA | CTD | PMID:18796159 PMID:21215274 | ammonium chloride | affects expression | ISO | RGD:3188 | 6480464 | Ammonium Chloride affects the expression of NOTCH2 mRNA | CTD | PMID:16483693 | arsenite(3-) | affects expression | EXP | | 6480464 | arsenite affects the expression of NOTCH2 mRNA | CTD | PMID:22959463 | benzo[a]pyrene | increases expression | EXP | | 6480464 | Benzo(a)pyrene results in increased expression of NOTCH2 mRNA | CTD | PMID:19181443 | benzo[a]pyrene | multiple interactions | ISO | RGD:736047 | 6480464 | [Benzo(a)pyrene co-treated with XPA gene mutant form co-treated with TRP53 gene mutant form] results in decreased expression of NOTCH2 mRNA | CTD | PMID:21715664 | bis(2-chloroethyl) sulfide | multiple interactions | EXP | | 6480464 | IL10 protein affects the reaction [Mustard Gas affects the expression of NOTCH2 mRNA] | CTD | PMID:16173061 | bis(2-chloroethyl) sulfide | decreases expression | ISO | RGD:736047 | 6480464 | Mustard Gas results in decreased expression of NOTCH2 mRNA | CTD | PMID:15674843 | bis(2-ethylhexyl) phthalate | multiple interactions | ISO | RGD:3188 | 6480464 | [bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate] affects the methylation of NOTCH2 promoter | CTD | PMID:23359474 | bisphenol A | multiple interactions | ISO | RGD:3188 | 6480464 | [bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate] affects the methylation of NOTCH2 promoter | CTD | PMID:23359474 | C60 fullerene | decreases expression | ISO | RGD:3188 | 6480464 | fullerene C60 results in decreased expression of NOTCH2 mRNA | CTD | PMID:19167457 | ciguatoxin CTX1B | affects expression | ISO | RGD:736047 | 6480464 | Ciguatoxins affects the expression of NOTCH2 mRNA | CTD | PMID:18353800 | cisplatin | affects response to substance | EXP | | 6480464 | NOTCH2 protein affects the susceptibility to Cisplatin | CTD | PMID:16217747 | crocidolite asbestos | affects expression | EXP | | 6480464 | Asbestos, Crocidolite affects the expression of NOTCH2 mRNA | CTD | PMID:17331233 | dibutyl phthalate | decreases expression | ISO | RGD:3188 | 6480464 | Dibutyl Phthalate results in decreased expression of NOTCH2 mRNA | CTD | PMID:21266533 | dibutyl phthalate | multiple interactions | ISO | RGD:3188 | 6480464 | [bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate] affects the methylation of NOTCH2 promoter | CTD | PMID:23359474 | dibutyl phthalate | increases expression | ISO | RGD:3188 | 6480464 | Dibutyl Phthalate results in increased expression of NOTCH2 mRNA | CTD | PMID:15829613 | genistein | decreases expression | ISO | RGD:3188 | 6480464 | Genistein results in decreased expression of NOTCH2 mRNA | CTD | PMID:17341692 | lead diacetate | increases expression | ISO | RGD:736047 | 6480464 | lead acetate results in increased expression of NOTCH2 mRNA | CTD | PMID:20542052 | N-nitrosodiethylamine | multiple interactions | ISO | RGD:3188 | 6480464 | [Diethylnitrosamine co-treated with caffeic acid phenethyl ester] results in decreased expression of NOTCH2 mRNA | CTD | PMID:20360939 | paracetamol | decreases expression | EXP | | 6480464 | Acetaminophen results in decreased expression of NOTCH2 mRNA | CTD | PMID:21420995 | phenethyl isothiocyanate | increases expression | EXP | | 6480464 | phenethyl isothiocyanate results in increased expression of NOTCH2 mRNA | CTD | PMID:22039516 | phenethyl isothiocyanate | increases response to substance | EXP | | 6480464 | NOTCH2 protein results in increased susceptibility to phenethyl isothiocyanate | CTD | PMID:22039516 | phenethyl isothiocyanate | multiple interactions | EXP | | 6480464 | phenethyl isothiocyanate results in increased cleavage of and results in increased activity of and results in increased localization of NOTCH2 protein | CTD | PMID:22039516 | pirinixic acid | decreases expression | ISO | RGD:736047 | 6480464 | pirinixic acid results in decreased expression of NOTCH2 mRNA | CTD | PMID:18445702 PMID:17426115 | pirinixic acid | decreases expression | ISO | RGD:736047 | 6480464 | pirinixic acid results in decreased expression of NOTCH2 mRNA | CTD | PMID:17426115 PMID:18445702 | progesterone | decreases expression | EXP | | 6480464 | Progesterone results in decreased expression of NOTCH2 mRNA | CTD | PMID:18070364 | resveratrol | increases expression | EXP | | 6480464 | resveratrol results in increased expression of NOTCH2 mRNA | CTD | PMID:21184191 | retinyl acetate | increases expression | ISO | RGD:736047 | 6480464 | retinol acetate results in increased expression of NOTCH2 mRNA | CTD | PMID:16772331 | tetrachloromethane | increases expression | ISO | RGD:736047 | 6480464 | Carbon Tetrachloride results in increased expression of NOTCH2 protein | CTD | PMID:12500195 | tetrachloromethane | multiple interactions | ISO | RGD:736047 | 6480464 | FOXF1A protein affects the reaction [Carbon Tetrachloride results in increased expression of NOTCH2 protein]; more ... | CTD | PMID:12500195 | trans-resveratrol | increases expression | EXP | | 6480464 | resveratrol results in increased expression of NOTCH2 mRNA | CTD | PMID:21184191 | uranium atom | affects expression | EXP | | 6480464 | Uranium affects the expression of NOTCH2 mRNA | CTD | PMID:15672453 | | 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Gene Ontology Annotations
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | Dorso-ventral axis formation |
| Notch signaling pathway | |
| Pathway Interaction Database | Notch signaling pathway (PID:200015) |
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | Dorso-ventral axis formation |
| Notch signaling pathway | |
| Pathway Interaction Database | Notch signaling pathway (PID:200015) |
References - curated| 1. |
Fiuza UM and Arias AM, J Endocrinol. 2007 Sep;194(3):459-74. |
| 2. |
GOA_HUMAN data from the GO Consortium |
| 3. |
Jundt F, etal., Blood. 2004 May 1;103(9):3511-5. Epub 2004 Jan 15. |
| 4. |
McDaniell R, etal., Am J Hum Genet. 2006 Jul;79(1):169-73. Epub 2006 May 10. |
| 5. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 6. |
Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
| 7. |
RGD automated import pipeline for gene-chemical interactions |
| 8. |
RGD Automated Pipelines |
| 9. |
Weinmaster G, etal., Development 1992 Dec;116(4):931-41. |
References - uncurated| PubMed | 10079256 |
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RGD Disease Portals| NOTCH2 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| NOTCH2 (Homo sapiens) |
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| Notch2 (Mus musculus) |
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| Notch2 (Rattus norvegicus) |
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Position Markers| D1S2696 |
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| G19892 |
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| A002B26 |
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| RH69557 |
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| AL033980 |
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| AL034022 |
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| AL033805 |
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| RH120586 |
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| RH123510 |
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| RH123942 |
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| G63387 |
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| SHGC-106854 |
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| SHGC-54558 |
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| SHGC-75405 |
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| SHGC-152728 |
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QTLs in Region (Human Genome Assembly GRCh37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NG_008163 | (Get FASTA) | Search GEO for Microarray Profiles |
| NM_001200001 | (Get FASTA) | Search GEO for Microarray Profiles | |
| NM_024408 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | ABBA01068518 | (Get FASTA) | Search GEO for Microarray Profiles |
| ABBA01068519 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AC245008 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF308601 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AF315356 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK027869 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK307843 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL049386 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL133036 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL359752 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL512503 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL596222 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AMYH01000980 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC071562 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BG718124 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH471122 | (Get FASTA) | Search GEO for Microarray Profiles | |
| DB290699 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GQ231534 | (Get FASTA) | Search GEO for Microarray Profiles | |
| U50549 | (Get FASTA) | Search GEO for Microarray Profiles | |
| U77493 | (Get FASTA) | Search GEO for Microarray Profiles | |
| X80115 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_024408 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_077719 | |||||||||||||||||||||||||
| Peptide Label: | isoform 1 preproprotein | |||||||||||||||||||||||||
| Position: |
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| RefSeq Acc Id: | NM_001200001 | ||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Protein Acc Id: | NP_001186930 | ||||||||||||||||||||
| Peptide Label: | isoform 2 precursor | ||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_001186930 | (Get FASTA) |
| NP_077719 | (Get FASTA) | |
| GenBank Protein | AAA36377 | (Get FASTA) |
| AAB17664 | (Get FASTA) | |
| AAB19224 | (Get FASTA) | |
| AAG37073 | (Get FASTA) | |
| AAH71562 | (Get FASTA) | |
| ADB12482 | (Get FASTA) | |
| BAB55419 | (Get FASTA) | |
| CAB61366 | (Get FASTA) | |
| CAH70182 | (Get FASTA) | |
| EAW56718 | (Get FASTA) | |
| EAW56719 | (Get FASTA) | |
| Q04721 | (Get FASTA) |
Promoters| RGD ID: | 6786123 | ||||||||||
| Promoter ID: | HG_KWN:4410 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | HeLa_S3, Lymphoblastoid, NB4 | ||||||||||
| Transcripts: | ENST00000401649, NM_024408, UC001EIL.2, UC001EIM.2 | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| COSMIC | NOTCH2 | COSMIC |
| Ensembl Genes | ENSG00000134250 | ENTREZGENE |
| Ensembl Protein | ENSP00000256646 | ENTREZGENE |
| Ensembl Transcript | ENST00000256646 | ENTREZGENE |
| Entrez Gene | 4853 | ENTREZGENE |
| Gene3D-CATH | ANK | UniProtKB/Swiss-Prot |
| Germonline | ENSG00000134250 | |
| HGNC ID | 7882 | ENTREZGENE |
| HomoloGene Group ID | 7865 | ENTREZGENE |
| HPRD ID | 02606 | ENTREZGENE |
| InterPro | Ankyrin_rpt | UniProtKB/Swiss-Prot |
| Ankyrin_rpt-contain_dom | UniProtKB/Swiss-Prot | |
| DUF3454_notch | UniProtKB/Swiss-Prot | |
| EGF-like_Ca-bd | UniProtKB/Swiss-Prot | |
| EGF-like_reg_CS | UniProtKB/Swiss-Prot | |
| EGF-type_Asp/Asn_hydroxyl_site | UniProtKB/Swiss-Prot | |
| EGF_3 | UniProtKB/Swiss-Prot | |
| EGF_Ca-bd_CS | UniProtKB/Swiss-Prot | |
| Notch | UniProtKB/Swiss-Prot | |
| Notch_2 | UniProtKB/Swiss-Prot | |
| Notch_dom | UniProtKB/Swiss-Prot | |
| Notch_NOD_dom | UniProtKB/Swiss-Prot | |
| Notch_NODP_dom | UniProtKB/Swiss-Prot | |
| IPI | IPI00297655 | UniProtKB/Swiss-Prot |
| IPI00981408 | UniProtKB/TrEMBL | |
| KEGG Report | hsa:4853 | ENTREZGENE, UniProtKB/Swiss-Prot |
| OMIM | 102500 | OMIM |
| 600275 | OMIM | |
| 610205 | OMIM | |
| Pfam | Ank | UniProtKB/Swiss-Prot |
| Ank_2 | UniProtKB/Swiss-Prot | |
| DUF3454 | UniProtKB/Swiss-Prot | |
| EGF | UniProtKB/Swiss-Prot | |
| EGF_CA | UniProtKB/Swiss-Prot | |
| NOD | UniProtKB/Swiss-Prot | |
| NODP | UniProtKB/Swiss-Prot | |
| Notch | UniProtKB/Swiss-Prot | |
| PharmGKB | PA31684 | PharmGKB |
| PIRSF | Notch | UniProtKB/Swiss-Prot |
| PRINTS | LNOTCHREPEAT | UniProtKB/Swiss-Prot |
| NOTCH2 | UniProtKB/Swiss-Prot | |
| PROSITE | ANK_REP_REGION | UniProtKB/Swiss-Prot |
| ANK_REPEAT | UniProtKB/Swiss-Prot | |
| ASX_HYDROXYL | UniProtKB/Swiss-Prot | |
| EGF_1 | UniProtKB/Swiss-Prot | |
| EGF_2 | UniProtKB/Swiss-Prot | |
| EGF_3 | UniProtKB/Swiss-Prot | |
| EGF_CA | UniProtKB/Swiss-Prot | |
| LNR | UniProtKB/Swiss-Prot | |
| SMART | ANK | UniProtKB/Swiss-Prot |
| EGF | UniProtKB/Swiss-Prot | |
| EGF_CA | UniProtKB/Swiss-Prot | |
| SM00004 | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | ANK | UniProtKB/Swiss-Prot |
| Notch_region | UniProtKB/Swiss-Prot | |
| UniGene | Hs.487360 | ENTREZGENE |
| UniProt | NOTC2_HUMAN | UniProtKB/Swiss-Prot |
| Q6IQ50_HUMAN | UniProtKB/TrEMBL | |
| Q9UFD5_HUMAN | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2011-08-16 | NOTCH2 | notch 2 | NOTCH2 | notch 2 | Symbol and/or name change | 39860 | APPROVED |
| 2011-07-27 | NOTCH2 | notch 2 | NOTCH2 | Notch homolog 2 (Drosophila) | Symbol and/or name change | 39860 | APPROVED |
| More on NOTCH2 | |||
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Entrez Gene | ||
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Ensembl Gene | ||
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HGNC Report | ||
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NCBI Map Viewer | ||
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Vista | ||
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Vista + UCSC | ||
| RGD Object Information | |
| RGD ID: | 733357 |
| Created: | 2004-01-12 |
| Species: | Homo sapiens |
| Last Modified: | 2013-04-23 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




