Adar (adenosine deaminase, RNA-specific) - Rat Genome Database

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Gene: Adar (adenosine deaminase, RNA-specific) Mus musculus
Analyze
Symbol: Adar
Name: adenosine deaminase, RNA-specific
RGD ID: 732453
MGI Page MGI
Description: Predicted to enable double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and tRNA-specific adenosine deaminase activity. Involved in adenosine to inosine editing; cellular response to virus; and positive regulation of viral genome replication. Acts upstream of or within several processes, including hematopoietic stem cell homeostasis; hemopoiesis; and regulation of gene expression. Located in cytoplasm and nucleolus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Used to study Aicardi-Goutieres syndrome. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome; Human papillomavirus infectious disease; dyschromatosis symmetrica hereditaria; and liver cirrhosis. Orthologous to human ADAR (adenosine deaminase RNA specific).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AD; Adar1; Adar1p110; Adar1p150; AV242451; double-stranded RNA-specific adenosine deaminase; DRADA; mZa; mZaADAR; RNA adenosine deaminase 1; RNA-specific adenosine deaminase p110 form; RNA-specific adenosine deaminase p150 form
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,622,321 - 89,660,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,622,329 - 89,660,753 (+)EnsemblGRCm39 Ensembl
GRCm38389,714,469 - 89,753,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,715,022 - 89,753,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,518,944 - 89,557,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,800,987 - 89,839,372 (+)NCBIMGSCv36mm8
Celera389,752,022 - 89,790,497 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chromium(6+)  (ISO)
clofibrate  (EXP)
clotrimazole  (ISO)
crocidolite asbestos  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
flutamide  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
inulin  (EXP)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
maneb  (EXP)
methimazole  (ISO)
methotrexate  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
poly(I:C)  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sulfadimethoxine  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
triptonide  (EXP)
tungsten  (EXP)
uranium atom  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,ISO)
nuclear speck  (ISO)
nucleolus  (IBA,IDA,ISO)
nucleoplasm  (ISO)
nucleus  (IDA,ISO)
supraspliceosomal complex  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal apoptosis  (IAGP)
abnormal cell physiology  (IAGP)
abnormal chemokine level  (IAGP)
abnormal circulating enzyme level  (IAGP)
abnormal circulating interferon-beta level  (IAGP)
abnormal definitive hematopoiesis  (IAGP)
abnormal embryo size  (IEA)
abnormal embryonic erythropoiesis  (IAGP)
abnormal hematopoietic stem cell morphology  (IAGP)
abnormal homeostasis  (IAGP)
abnormal liver development  (IAGP)
abnormal liver morphology  (IAGP)
abnormal neural tube closure  (IEA)
abnormal placenta size  (IEA)
abnormal renal glomerulus morphology  (IAGP)
abnormal spleen morphology  (IAGP)
absent common myeloid progenitor cells  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased circulating glucose level  (IEA)
decreased circulating serum albumin level  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
expanded mesangial matrix  (IAGP)
growth/size/body region phenotype  (IAGP)
homeostasis/metabolism phenotype  (IAGP)
hyperglycemia  (IAGP)
impaired hematopoiesis  (IAGP)
increased circulating alanine transaminase level  (IAGP)
increased circulating alkaline phosphatase level  (IAGP)
increased circulating aspartate transaminase level  (IAGP)
increased circulating interferon-alpha level  (IAGP)
increased circulating interleukin-1 level  (IAGP)
increased circulating interleukin-17 level  (IAGP)
increased circulating interleukin-6 level  (IAGP)
increased circulating lactate dehydrogenase level  (IAGP)
increased CXCL10 level  (IAGP)
increased embryonic tissue cell apoptosis  (IAGP)
increased hepatocyte apoptosis  (IAGP)
increased sensitivity to induced cell death  (IAGP)
increased susceptibility to Orthomyxoviridae infection  (IAGP)
increased susceptibility to Paramyxoviridae infection  (IAGP)
internal hemorrhage  (IAGP)
lethality, complete penetrance  (IAGP)
liver hypoplasia  (IAGP)
mortality/aging  (IAGP)
pale yolk sac  (IAGP)
pallor  (IEA)
postnatal lethality, complete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
small liver  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. ADAR1 overexpression is associated with cervical cancer progression and angiogenesis. Chen Y, etal., Diagn Pathol. 2017 Jan 21;12(1):12. doi: 10.1186/s13000-017-0600-0.
2. Janus effects of ADAR1 on CVB3-induced viral myocarditis at different infection stages. Dong N, etal., Int J Cardiol. 2016 Nov 15;223:898-905. doi: 10.1016/j.ijcard.2016.08.315. Epub 2016 Aug 22.
3. Integrative role of vitamin D related and Interleukin-28B genes polymorphism in predicting treatment outcomes of Chronic Hepatitis C. El-Derany MO, etal., BMC Gastroenterol. 2016 Feb 24;16:19. doi: 10.1186/s12876-016-0440-5.
4. A-to-I editing of microRNAs: regulating the regulators? Gommans WM Semin Cell Dev Biol. 2012 May;23(3):251-7. doi: 10.1016/j.semcdb.2011.09.018. Epub 2011 Oct 5.
5. Liver disintegration in the mouse embryo caused by deficiency in the RNA-editing enzyme ADAR1. Hartner JC, etal., J Biol Chem. 2004 Feb 6;279(6):4894-902. Epub 2003 Nov 12.
6. Gene-gene and gene-environment interactions in interferon therapy for chronic hepatitis C. Lin E, etal., Pharmacogenomics. 2007 Oct;8(10):1327-35. doi: 10.2217/14622416.8.10.1327.
7. ADAR1 polymorphisms are related to severity of liver fibrosis in HIV/HCV-coinfected patients. Medrano LM, etal., Sci Rep. 2017 Oct 10;7(1):12918. doi: 10.1038/s41598-017-12885-4.
8. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
9. MGDs mouse GO annotations MGD data from the GO Consortium
10. MGD IEA MGD IEA
11. Mutations of the RNA-specific adenosine deaminase gene (DSRAD) are involved in dyschromatosis symmetrica hereditaria. Miyamura Y, etal., Am J Hum Genet. 2003 Sep;73(3):693-9. Epub 2003 Aug 11.
12. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
13. Enhanced AZIN1 RNA editing and overexpression of its regulatory enzyme ADAR1 are important prognostic biomarkers in gastric cancer. Okugawa Y, etal., J Transl Med. 2018 Dec 18;16(1):366. doi: 10.1186/s12967-018-1740-z.
14. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
15. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
16. ADAR1 affects HCV infection by modulating innate immune response. Pujantell M, etal., Antiviral Res. 2018 Aug;156:116-127. doi: 10.1016/j.antiviral.2018.05.012. Epub 2018 Jun 12.
17. ADAR1 function affects HPV replication and is associated to recurrent human papillomavirus-induced dysplasia in HIV coinfected individuals. Pujantell M, etal., Sci Rep. 2019 Dec 27;9(1):19848. doi: 10.1038/s41598-019-56422-x.
18. Mouse MP Annotation Import Pipeline RGD automated import pipeline
19. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
20. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
21. Mutations in ADAR1 cause Aicardi-Goutieres syndrome associated with a type I interferon signature. Rice GI, etal., Nat Genet. 2012 Nov;44(11):1243-8. doi: 10.1038/ng.2414. Epub 2012 Sep 23.
22. Tissue selectivity of interferon-stimulated gene expression in mice infected with Dam(+) versus Dam(-) Salmonella enterica serovar Typhimurium strains. Shtrichman R, etal., Infect Immun. 2002 Oct;70(10):5579-88. doi: 10.1128/iai.70.10.5579-5588.2002.
23. Mutation analysis of the ADAR1 gene in dyschromatosis symmetrica hereditaria and genetic differentiation from both dyschromatosis universalis hereditaria and acropigmentatio reticularis. Suzuki N, etal., J Invest Dermatol. 2005 Jun;124(6):1186-92.
24. Stress-induced apoptosis associated with null mutation of ADAR1 RNA editing deaminase gene. Wang Q, etal., J Biol Chem. 2004 Feb 6;279(6):4952-61. Epub 2003 Nov 12.
25. Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis. Wang Q, etal., Science 2000 Dec 1;290(5497):1765-8.
26. Variants in interferon-alpha pathway genes and response to pegylated interferon-Alpha2a plus ribavirin for treatment of chronic hepatitis C virus infection in the hepatitis C antiviral long-term treatment against cirrhosis trial. Welzel TM, etal., Hepatology. 2009 Jun;49(6):1847-58. doi: 10.1002/hep.22877.
27. A functional polymorphism in ADAR1 gene affects HBsAg seroclearance both spontaneously and interferon induced. Wu X, etal., Liver Int. 2014 Nov;34(10):1560-5. doi: 10.1111/liv.12444. Epub 2014 Jan 16.
28. Adenosine deaminase that acts on RNA 1 p150 in alveolar macrophage is involved in LPS-induced lung injury. Wu Y, etal., Shock. 2009 Apr;31(4):410-15. doi: 10.1097/SHK.0b013e31817c1068.
29. ADAR1p150 Forms a Complex with Dicer to Promote miRNA-222 Activity and Regulate PTEN Expression in CVB3-Induced Viral Myocarditis. Zhang X, etal., Int J Mol Sci. 2019 Jan 18;20(2). pii: ijms20020407. doi: 10.3390/ijms20020407.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10965125   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11524677   PMID:12453429   PMID:12477932   PMID:12618436   PMID:12709013   PMID:12819125  
PMID:12904583   PMID:12954622   PMID:14610273   PMID:14681479   PMID:14711814   PMID:15226823   PMID:15489334   PMID:15556947   PMID:15677478   PMID:15747579   PMID:15782199   PMID:16004606  
PMID:16033648   PMID:16055709   PMID:16082172   PMID:16141072   PMID:16141073   PMID:16369484   PMID:16602821   PMID:17079286   PMID:17369310   PMID:17698644   PMID:17967808   PMID:18362360  
PMID:18430892   PMID:18774582   PMID:18799693   PMID:19060901   PMID:19325227   PMID:19420382   PMID:19422845   PMID:19757169   PMID:19805087   PMID:20590675   PMID:20651031   PMID:21173229  
PMID:21266480   PMID:21267068   PMID:21593418   PMID:21632755   PMID:21677750   PMID:21729523   PMID:21873635   PMID:22310477   PMID:22922362   PMID:22987615   PMID:23123729   PMID:23209284  
PMID:23571754   PMID:23598411   PMID:23622242   PMID:23766440   PMID:24025532   PMID:24194600   PMID:24440912   PMID:24882218   PMID:25172485   PMID:25456137   PMID:26275108   PMID:26335850  
PMID:26383032   PMID:26453800   PMID:26552429   PMID:26588779   PMID:26768488   PMID:26817845   PMID:26832817   PMID:27199464   PMID:27362366   PMID:27373493   PMID:27626380   PMID:28106799  
PMID:28355180   PMID:28378742   PMID:28395340   PMID:28559490   PMID:28874170   PMID:28960389   PMID:29084589   PMID:29203771   PMID:29414324   PMID:29541541   PMID:29694248   PMID:30361393  
PMID:30550785   PMID:30559380   PMID:30651342   PMID:30973865   PMID:31138677   PMID:31801951   PMID:31815657   PMID:31924792   PMID:31941663   PMID:31956894   PMID:32169840   PMID:32258062  
PMID:32325033   PMID:32362246   PMID:32367065   PMID:32396862   PMID:32554809   PMID:32727871   PMID:33252250   PMID:33712600   PMID:33983932   PMID:34332594   PMID:34343497   PMID:34380029  
PMID:34525337   PMID:34525338   PMID:34551587   PMID:34686350   PMID:34772697   PMID:34969816   PMID:35034631   PMID:35067718   PMID:35132959   PMID:35614224   PMID:35690649   PMID:35851616  
PMID:35859175   PMID:35859176   PMID:35859177   PMID:35977796   PMID:36000401   PMID:36068334   PMID:36252997   PMID:36417848   PMID:36457126   PMID:36458554   PMID:36469491   PMID:36532023  
PMID:36577155   PMID:36599932   PMID:36688311   PMID:36732946   PMID:36975179   PMID:37026479   PMID:37100060   PMID:37209819   PMID:37223095   PMID:37290963   PMID:37421629   PMID:37797622  
PMID:37801857   PMID:37831098   PMID:37935565   PMID:38113710   PMID:38128529   PMID:38169584  


Genomics

Comparative Map Data
Adar
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,622,321 - 89,660,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,622,329 - 89,660,753 (+)EnsemblGRCm39 Ensembl
GRCm38389,714,469 - 89,753,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,715,022 - 89,753,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,518,944 - 89,557,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,800,987 - 89,839,372 (+)NCBIMGSCv36mm8
Celera389,752,022 - 89,790,497 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.19NCBI
ADAR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,582,057 - 154,627,997 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,581,695 - 154,628,013 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,554,533 - 154,600,473 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,821,157 - 152,867,061 (-)NCBINCBI36Build 36hg18NCBI36
Build 341151,367,612 - 151,393,742NCBI
Celera1127,626,167 - 127,672,093 (-)NCBICelera
Cytogenetic Map1q21.3ENTREZGENE
HuRef1125,917,984 - 125,963,676 (-)NCBIHuRef
CHM1_11155,950,933 - 155,996,946 (-)NCBICHM1_1
T2T-CHM13v2.01153,719,177 - 153,765,142 (-)NCBIT2T-CHM13v2.0
Adar
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,436,076 - 177,475,969 (+)NCBIGRCr8
mRatBN7.22175,138,391 - 175,178,280 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,138,403 - 175,178,282 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,303,808 - 182,324,734 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,326,190 - 180,347,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,927,089 - 174,948,007 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,045,551 - 189,085,448 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,062,443 - 189,083,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,468,426 - 208,506,275 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,935,246 - 181,956,039 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,885,351 - 181,906,145 (+)NCBI
Celera2169,097,840 - 169,118,615 (+)NCBICelera
Cytogenetic Map2q34NCBI
Adar
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,078,319 - 1,106,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,078,319 - 1,106,938 (-)NCBIChiLan1.0ChiLan1.0
ADAR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,202,292 - 95,251,931 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,937,379 - 94,984,250 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,937,993 - 129,983,747 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,549,380 - 133,595,115 (-)NCBIpanpan1.1PanPan1.1panPan2
ADAR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,762,021 - 42,785,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,748,136 - 42,782,999 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,237,226 - 42,275,953 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,632,040 - 42,655,201 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,616,310 - 42,655,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,411,330 - 42,434,458 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,449,549 - 42,488,308 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,733,156 - 42,771,908 (+)NCBIUU_Cfam_GSD_1.0
Adar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,150,541 - 25,177,944 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,183,079 - 4,203,435 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,183,016 - 4,208,341 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADAR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,154,358 - 95,197,304 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,154,230 - 95,197,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,980,303 - 104,023,300 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADAR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,194,611 - 9,241,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,219,937 - 9,241,329 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,533,486 - 8,579,871 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adar
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,812,448 - 2,839,693 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,783,058 - 2,839,688 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Adar
1227 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2722
Count of miRNA genes:684
Interacting mature miRNAs:876
Transcripts:ENSMUST00000029563, ENSMUST00000098924, ENSMUST00000107405, ENSMUST00000118341, ENSMUST00000121094, ENSMUST00000123691, ENSMUST00000131030, ENSMUST00000150637
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse

Markers in Region
AW822028  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,753,031 - 89,753,304UniSTSGRCm38
MGSCv37389,556,953 - 89,557,226UniSTSGRCm37
Celera389,790,073 - 89,790,346UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map3F1UniSTS
cM Map341.8UniSTS
Whitehead/MRC_RH3901.79UniSTS
AV242451  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,751,507 - 89,751,653UniSTSGRCm38
MGSCv37389,555,429 - 89,555,575UniSTSGRCm37
Celera389,788,549 - 89,788,695UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH3914.49UniSTS
Adar  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37389,553,573 - 89,555,040UniSTSGRCm37
Celera389,786,693 - 89,788,160UniSTS
Cytogenetic Map3F2UniSTS
cM Map3 UniSTS
Adar  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,749,651 - 89,751,118UniSTSGRCm38
MGSCv37389,553,573 - 89,555,040UniSTSGRCm37
Celera389,786,693 - 89,788,160UniSTS
Cytogenetic Map3F2UniSTS
cM Map3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001038587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001146296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH013751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH013791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY509125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY509126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP758811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY776547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ180874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF190454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029563   ⟹   ENSMUSP00000029563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,638,055 - 89,658,713 (+)Ensembl
GRCm38.p6 Ensembl389,730,748 - 89,751,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098924   ⟹   ENSMUSP00000096525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,622,329 - 89,660,753 (+)Ensembl
GRCm38.p6 Ensembl389,715,022 - 89,753,446 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107405   ⟹   ENSMUSP00000103028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,638,055 - 89,660,753 (+)Ensembl
GRCm38.p6 Ensembl389,730,748 - 89,753,446 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118341   ⟹   ENSMUSP00000113453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,638,055 - 89,658,713 (+)Ensembl
GRCm38.p6 Ensembl389,730,748 - 89,751,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121094   ⟹   ENSMUSP00000112969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,638,055 - 89,658,713 (+)Ensembl
GRCm38.p6 Ensembl389,730,748 - 89,751,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,622,639 - 89,642,460 (+)Ensembl
GRCm38.p6 Ensembl389,715,332 - 89,735,153 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,652,952 - 89,654,518 (+)Ensembl
GRCm38.p6 Ensembl389,745,645 - 89,747,211 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,644,893 - 89,646,596 (+)Ensembl
GRCm38.p6 Ensembl389,737,586 - 89,739,289 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,622,329 - 89,623,996 (+)Ensembl
GRCm38.p6 Ensembl389,715,022 - 89,716,689 (+)Ensembl
RefSeq Acc Id: NM_001038587   ⟹   NP_001033676
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,622,357 - 89,660,753 (+)NCBI
GRCm38389,715,022 - 89,753,455 (+)ENTREZGENE
MGSCv37389,518,944 - 89,557,377 (+)RGD
Celera389,752,022 - 89,790,497 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001146296   ⟹   NP_001139768
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,638,064 - 89,660,753 (+)NCBI
GRCm38389,730,718 - 89,753,455 (+)NCBI
MGSCv37389,518,944 - 89,557,377 (+)RGD
Celera389,752,022 - 89,790,497 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357958   ⟹   NP_001344887
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,622,357 - 89,660,753 (+)NCBI
GRCm38389,715,238 - 89,753,455 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001410658   ⟹   NP_001397587
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,638,064 - 89,660,753 (+)NCBI
RefSeq Acc Id: NM_001410659   ⟹   NP_001397588
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,622,357 - 89,660,753 (+)NCBI
RefSeq Acc Id: NM_001410660   ⟹   NP_001397589
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,622,357 - 89,660,753 (+)NCBI
RefSeq Acc Id: NM_001410661   ⟹   NP_001397590
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,622,357 - 89,660,753 (+)NCBI
RefSeq Acc Id: NM_001410662   ⟹   NP_001397591
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,638,064 - 89,660,753 (+)NCBI
RefSeq Acc Id: NM_001410663   ⟹   NP_001397592
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,622,357 - 89,660,753 (+)NCBI
RefSeq Acc Id: NM_001410664   ⟹   NP_001397593
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,638,064 - 89,660,753 (+)NCBI
RefSeq Acc Id: NM_019655   ⟹   NP_062629
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,638,064 - 89,660,753 (+)NCBI
GRCm38389,730,718 - 89,753,455 (+)NCBI
MGSCv37389,518,944 - 89,557,377 (+)RGD
Celera389,752,022 - 89,790,497 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501753   ⟹   XP_006501816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,622,321 - 89,660,756 (+)NCBI
GRCm38389,715,012 - 89,753,449 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001033676 (Get FASTA)   NCBI Sequence Viewer  
  NP_001139768 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344887 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397587 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397588 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397589 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397590 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397591 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397592 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397593 (Get FASTA)   NCBI Sequence Viewer  
  NP_062629 (Get FASTA)   NCBI Sequence Viewer  
  XP_006501816 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC06233 (Get FASTA)   NCBI Sequence Viewer  
  AAH42505 (Get FASTA)   NCBI Sequence Viewer  
  AAK16101 (Get FASTA)   NCBI Sequence Viewer  
  AAK16102 (Get FASTA)   NCBI Sequence Viewer  
  AAK16103 (Get FASTA)   NCBI Sequence Viewer  
  AAK17103 (Get FASTA)   NCBI Sequence Viewer  
  AAS82588 (Get FASTA)   NCBI Sequence Viewer  
  AAS82589 (Get FASTA)   NCBI Sequence Viewer  
  AAS82590 (Get FASTA)   NCBI Sequence Viewer  
  AAS82591 (Get FASTA)   NCBI Sequence Viewer  
  AAT06052 (Get FASTA)   NCBI Sequence Viewer  
  ABM73521 (Get FASTA)   NCBI Sequence Viewer  
  BAC40888 (Get FASTA)   NCBI Sequence Viewer  
  BAE28026 (Get FASTA)   NCBI Sequence Viewer  
  BAE43048 (Get FASTA)   NCBI Sequence Viewer  
  CAJ18531 (Get FASTA)   NCBI Sequence Viewer  
  EDL15185 (Get FASTA)   NCBI Sequence Viewer  
  EDL15186 (Get FASTA)   NCBI Sequence Viewer  
  EDL15187 (Get FASTA)   NCBI Sequence Viewer  
  EDL15188 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000029563
  ENSMUSP00000029563.9
  ENSMUSP00000096525
  ENSMUSP00000096525.3
  ENSMUSP00000103028
  ENSMUSP00000103028.3
  ENSMUSP00000112969
  ENSMUSP00000112969.2
  ENSMUSP00000113453
  ENSMUSP00000113453.2
GenBank Protein Q99MU3 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001033676   ⟸   NM_001038587
- Peptide Label: isoform 2
- UniProtKB: Q3UH31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_062629   ⟸   NM_019655
- Peptide Label: isoform 1
- UniProtKB: Q4FJS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139768   ⟸   NM_001146296
- Peptide Label: isoform 3
- UniProtKB: Q99MU4 (UniProtKB/Swiss-Prot),   Q99MU2 (UniProtKB/Swiss-Prot),   Q8C222 (UniProtKB/Swiss-Prot),   Q80UZ6 (UniProtKB/Swiss-Prot),   O70375 (UniProtKB/Swiss-Prot),   Q99MU7 (UniProtKB/Swiss-Prot),   Q99MU3 (UniProtKB/Swiss-Prot),   Q4FJS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501816   ⟸   XM_006501753
- Peptide Label: isoform X1
- UniProtKB: Q4FJS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344887   ⟸   NM_001357958
- Peptide Label: isoform 4
- UniProtKB: Q4FJS9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000096525   ⟸   ENSMUST00000098924
RefSeq Acc Id: ENSMUSP00000113453   ⟸   ENSMUST00000118341
RefSeq Acc Id: ENSMUSP00000029563   ⟸   ENSMUST00000029563
RefSeq Acc Id: ENSMUSP00000103028   ⟸   ENSMUST00000107405
RefSeq Acc Id: ENSMUSP00000112969   ⟸   ENSMUST00000121094
RefSeq Acc Id: NP_001397588   ⟸   NM_001410659
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001397590   ⟸   NM_001410661
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001397589   ⟸   NM_001410660
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001397592   ⟸   NM_001410663
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001397587   ⟸   NM_001410658
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001397591   ⟸   NM_001410662
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001397593   ⟸   NM_001410664
- Peptide Label: isoform 9
Protein Domains
A to I editase   DRBM   Z-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99MU3-F1-model_v2 AlphaFold Q99MU3 1-1178 view protein structure

Promoters
RGD ID:6833345
Promoter ID:MM_KWN:34978
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001038587,   OTTMUST00000048137
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36389,518,804 - 89,519,304 (+)MPROMDB
RGD ID:6833348
Promoter ID:MM_KWN:34979
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001146296,   NM_019655,   UC008PZY.1,   UC008PZZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36389,534,156 - 89,534,807 (+)MPROMDB
RGD ID:6833346
Promoter ID:MM_KWN:34980
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000048138
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36389,541,146 - 89,541,646 (+)MPROMDB
RGD ID:6833347
Promoter ID:MM_KWN:34981
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000048139
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36389,548,671 - 89,549,872 (+)MPROMDB
RGD ID:6881276
Promoter ID:EPDNEW_M4089
Type:initiation region
Name:Adar_1
Description:Mus musculus adenosine deaminase, RNA-specific , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4090  EPDNEW_M4091  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38389,715,050 - 89,715,110EPDNEW
RGD ID:6881278
Promoter ID:EPDNEW_M4090
Type:initiation region
Name:Adar_2
Description:Mus musculus adenosine deaminase, RNA-specific , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4089  EPDNEW_M4091  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38389,730,758 - 89,730,818EPDNEW
RGD ID:6881308
Promoter ID:EPDNEW_M4091
Type:single initiation site
Name:Adar_3
Description:Mus musculus adenosine deaminase, RNA-specific , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4089  EPDNEW_M4090  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38389,735,699 - 89,735,759EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1889575 AgrOrtholog
Ensembl Genes ENSMUSG00000027951 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000029563 ENTREZGENE
  ENSMUST00000029563.14 UniProtKB/Swiss-Prot
  ENSMUST00000098924 ENTREZGENE
  ENSMUST00000098924.9 UniProtKB/Swiss-Prot
  ENSMUST00000107405 ENTREZGENE
  ENSMUST00000107405.6 UniProtKB/Swiss-Prot
  ENSMUST00000118341 ENTREZGENE
  ENSMUST00000118341.6 UniProtKB/Swiss-Prot
  ENSMUST00000121094 ENTREZGENE
  ENSMUST00000121094.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.160.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro A_deamin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADAR1_DSRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADAR1_DSRM_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  dsRBD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zalpha_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56417 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1889575 ENTREZGENE
NCBI Gene 56417 ENTREZGENE
PANTHER DOUBLE-STRANDED RNA-SPECIFIC ADENOSINE DEAMINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam A_deamin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  dsrm UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  z-alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Adar PhenoGen
PROSITE A_DEAMIN_EDITASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DRADA_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DS_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ADEAMc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DSRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zalpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2IBT3_MOUSE UniProtKB/TrEMBL
  DSRAD_MOUSE UniProtKB/Swiss-Prot
  O70375 ENTREZGENE
  Q3T9H2_MOUSE UniProtKB/TrEMBL
  Q3UH31 ENTREZGENE, UniProtKB/TrEMBL
  Q4FJS9 ENTREZGENE, UniProtKB/TrEMBL
  Q5J3Q7_MOUSE UniProtKB/TrEMBL
  Q5J3Q8_MOUSE UniProtKB/TrEMBL
  Q5J4D4_MOUSE UniProtKB/TrEMBL
  Q5J4D5_MOUSE UniProtKB/TrEMBL
  Q80UZ6 ENTREZGENE
  Q8C222 ENTREZGENE
  Q99MU2 ENTREZGENE
  Q99MU3 ENTREZGENE
  Q99MU4 ENTREZGENE
  Q99MU7 ENTREZGENE
UniProt Secondary O70375 UniProtKB/Swiss-Prot
  Q80UZ6 UniProtKB/Swiss-Prot
  Q8C222 UniProtKB/Swiss-Prot
  Q99MU2 UniProtKB/Swiss-Prot
  Q99MU4 UniProtKB/Swiss-Prot
  Q99MU7 UniProtKB/Swiss-Prot