Erc1 (ELKS/RAB6-interacting/CAST family member 1) - Rat Genome Database

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Gene: Erc1 (ELKS/RAB6-interacting/CAST family member 1) Mus musculus
Analyze
Symbol: Erc1
Name: ELKS/RAB6-interacting/CAST family member 1
RGD ID: 731980
MGI Page MGI
Description: Enables small GTPase binding activity. A structural constituent of presynaptic active zone. Involved in regulation of calcium-dependent activation of synaptic vesicle fusion; regulation of presynaptic cytosolic calcium ion concentration; and synaptic vesicle priming. Acts upstream of or within retrograde transport, endosome to Golgi. Located in cytoplasm and synapse. Is active in GABA-ergic synapse; glutamatergic synapse; and presynaptic cytosol. Is expressed in several structures, including genitourinary system; gut gland; oral epithelium; retina; and telencephalon. Orthologous to human ERC1 (ELKS/RAB6-interacting/CAST family member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930404L01Rik; 5033405M01Rik; 9630025C19Rik; B430107L16Rik; CAST2; CAZ-associated structural protein 2; Elk; ELKS; Elks1; ERC-1; mKIAA1081; RAB; RAB6; Rab6 interacting protein 2; RAB6-interacting protein 2; Rab6ip2; RAB6IP2A; RAB6IP2B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396119,547,757 - 119,830,985 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6119,547,757 - 119,825,128 (-)EnsemblGRCm39 Ensembl
GRCm386119,570,796 - 119,848,184 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6119,570,796 - 119,848,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv376119,520,814 - 119,798,168 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366119,540,864 - 119,813,753 (-)NCBIMGSCv36mm8
Celera6121,405,104 - 121,685,429 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,5-hexanedione  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (EXP)
geraniol  (ISO)
glycidol  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
permethrin  (ISO)
pinostrobin  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
sunitinib  (ISO)
testosterone enanthate  (ISO)
thimerosal  (ISO)
torcetrapib  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11929610   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14723704   PMID:16141072  
PMID:16141073   PMID:16944949   PMID:16959763   PMID:17124501   PMID:18799693   PMID:19555761   PMID:20932476   PMID:21228161   PMID:21267068   PMID:21873635   PMID:22794259   PMID:23791195  
PMID:23960145   PMID:24194600   PMID:25209271   PMID:27224062   PMID:27253063   PMID:27537483   PMID:27626661   PMID:27889896   PMID:28264913   PMID:28671696   PMID:29398114   PMID:29491150  
PMID:29996090   PMID:30157441   PMID:30190286   PMID:30699350   PMID:30713523   PMID:30995482   PMID:31138677   PMID:31537859   PMID:31609468   PMID:31996256   PMID:32325033   PMID:32521280  
PMID:32937583   PMID:35006275   PMID:35176221   PMID:36179691   PMID:36398873   PMID:36417873  


Genomics

Comparative Map Data
Erc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396119,547,757 - 119,830,985 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6119,547,757 - 119,825,128 (-)EnsemblGRCm39 Ensembl
GRCm386119,570,796 - 119,848,184 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6119,570,796 - 119,848,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv376119,520,814 - 119,798,168 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366119,540,864 - 119,813,753 (-)NCBIMGSCv36mm8
Celera6121,405,104 - 121,685,429 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.86NCBI
ERC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812989,959 - 1,495,933 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12990,509 - 1,495,933 (+)EnsemblGRCh38hg38GRCh38
GRCh37121,100,389 - 1,605,099 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612970,665 - 1,472,958 (+)NCBINCBI36Build 36hg18NCBI36
Celera122,707,077 - 3,211,656 (+)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef12952,225 - 1,457,980 (+)NCBIHuRef
CHM1_1121,099,408 - 1,604,090 (+)NCBICHM1_1
T2T-CHM13v2.012985,850 - 1,490,194 (+)NCBIT2T-CHM13v2.0
Erc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84154,435,936 - 154,727,987 (-)NCBIGRCr8
mRatBN7.24152,763,664 - 153,055,724 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4152,767,419 - 153,055,639 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4159,025,966 - 159,332,211 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04154,809,683 - 155,115,934 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04153,433,030 - 153,739,286 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04152,087,393 - 152,380,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4152,087,379 - 152,380,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04219,174,705 - 219,465,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44155,931,377 - 156,221,104 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14156,234,169 - 156,465,945 (-)NCBI
Celera4141,623,820 - 141,910,539 (-)NCBICelera
Cytogenetic Map4q42NCBI
Erc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,586,667 - 4,031,130 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,584,910 - 4,036,276 (+)NCBIChiLan1.0ChiLan1.0
ERC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2106,489,987 - 7,025,406 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1126,486,819 - 7,022,165 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0121,066,034 - 1,597,562 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1121,027,967 - 1,550,182 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl121,027,967 - 1,545,431 (+)Ensemblpanpan1.1panPan2
ERC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12743,004,243 - 43,544,260 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2743,038,544 - 43,678,843 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,140,420 - 3,679,170 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02743,365,560 - 43,911,683 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2743,365,538 - 43,911,649 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12743,303,937 - 43,842,830 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02743,275,814 - 43,815,242 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,498,548 - 3,038,339 (-)NCBIUU_Cfam_GSD_1.0
Erc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945107,470,207 - 107,982,754 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366061,201,657 - 1,708,551 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366061,201,420 - 1,713,894 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl568,223,729 - 68,608,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1568,223,722 - 68,608,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2570,490,274 - 70,873,482 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111989,376 - 1,530,470 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,030,294 - 1,524,817 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,786 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473511,400,159 - 11,841,920 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473511,398,603 - 11,907,553 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Erc1
7736 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7885
Count of miRNA genes:913
Interacting mature miRNAs:1350
Transcripts:ENSMUST00000032279, ENSMUST00000079582, ENSMUST00000183703, ENSMUST00000183741, ENSMUST00000183872, ENSMUST00000183880, ENSMUST00000183911, ENSMUST00000184320, ENSMUST00000184838, ENSMUST00000184864, ENSMUST00000185139, ENSMUST00000185143
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined105982366120894102Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
8552704Cia43_mcollagen induced arthritis QTL 43 (mouse)Not determined6114159241119737532Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116641858128495988Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse

Markers in Region
AW121159  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386119,571,903 - 119,572,012UniSTSGRCm38
MGSCv376119,521,921 - 119,522,030UniSTSGRCm37
Cytogenetic Map6F1UniSTS
Whitehead/MRC_RH61222.35UniSTS
Whitehead/MRC_RH61231.56UniSTS
UniSTS:235538  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386119,603,954 - 119,604,075UniSTSGRCm38
MGSCv376119,553,972 - 119,554,093UniSTSGRCm37
Celera6121,438,265 - 121,438,386UniSTS
Cytogenetic Map6F1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC128662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF340028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF340029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY316692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000032279   ⟹   ENSMUSP00000032279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,547,765 - 119,802,187 (-)Ensembl
GRCm38.p6 Ensembl6119,570,804 - 119,825,226 (-)Ensembl
RefSeq Acc Id: ENSMUST00000079582   ⟹   ENSMUSP00000078534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,749,667 - 119,825,063 (-)Ensembl
GRCm38.p6 Ensembl6119,772,706 - 119,848,102 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183703   ⟹   ENSMUSP00000139031
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,547,757 - 119,825,111 (-)Ensembl
GRCm38.p6 Ensembl6119,570,796 - 119,848,150 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,800,946 - 119,803,421 (-)Ensembl
GRCm38.p6 Ensembl6119,823,985 - 119,826,460 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,698,239 - 119,773,875 (-)Ensembl
GRCm38.p6 Ensembl6119,721,278 - 119,796,914 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183880   ⟹   ENSMUSP00000138823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,551,538 - 119,825,076 (-)Ensembl
GRCm38.p6 Ensembl6119,574,577 - 119,848,115 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183911   ⟹   ENSMUSP00000139118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,552,276 - 119,825,128 (-)Ensembl
GRCm38.p6 Ensembl6119,575,315 - 119,848,167 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184320   ⟹   ENSMUSP00000139207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,551,974 - 119,720,405 (-)Ensembl
GRCm38.p6 Ensembl6119,575,013 - 119,743,444 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184838   ⟹   ENSMUSP00000139030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,552,206 - 119,825,095 (-)Ensembl
GRCm38.p6 Ensembl6119,575,245 - 119,848,134 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184864   ⟹   ENSMUSP00000139256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,550,689 - 119,825,020 (-)Ensembl
GRCm38.p6 Ensembl6119,573,728 - 119,848,059 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185139   ⟹   ENSMUSP00000139152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,549,591 - 119,825,060 (-)Ensembl
GRCm38.p6 Ensembl6119,572,630 - 119,848,099 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185143   ⟹   ENSMUSP00000138989
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,552,491 - 119,825,050 (-)Ensembl
GRCm38.p6 Ensembl6119,575,530 - 119,848,089 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6119,594,228 - 119,599,066 (-)Ensembl
GRCm38.p6 Ensembl6119,617,267 - 119,622,105 (-)Ensembl
RefSeq Acc Id: NM_053204   ⟹   NP_444434
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,111 (-)NCBI
GRCm386119,570,796 - 119,848,150 (-)NCBI
MGSCv376119,520,814 - 119,798,168 (-)RGD
Celera6121,405,104 - 121,685,429 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_178085   ⟹   NP_835186
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,749,668 - 119,825,111 (-)NCBI
GRCm386119,772,707 - 119,848,150 (-)NCBI
MGSCv376119,520,814 - 119,798,168 (-)RGD
Celera6121,405,104 - 121,685,429 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_104484
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,111 (-)NCBI
GRCm386119,570,796 - 119,848,150 (-)NCBI
Celera6121,405,104 - 121,685,429 (-)NCBI
Sequence:
RefSeq Acc Id: NR_155458
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,111 (-)NCBI
GRCm386119,570,796 - 119,848,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505370   ⟹   XP_006505433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,552,586 - 119,825,141 (-)NCBI
GRCm386119,575,625 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505371   ⟹   XP_006505434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,552,586 - 119,824,777 (-)NCBI
GRCm386119,575,625 - 119,847,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505373   ⟹   XP_006505436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,145 (-)NCBI
GRCm386119,570,796 - 119,848,184 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505378   ⟹   XP_006505441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
GRCm386119,570,796 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255101   ⟹   XP_030110961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,552,586 - 119,825,141 (-)NCBI
GRCm386119,575,625 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255102   ⟹   XP_030110962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,552,586 - 119,830,985 (-)NCBI
GRCm386119,575,625 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255104   ⟹   XP_030110964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,768 - 119,825,141 (-)NCBI
GRCm386119,570,796 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255105   ⟹   XP_030110965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
GRCm386119,570,796 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255106   ⟹   XP_030110966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,768 - 119,825,141 (-)NCBI
GRCm386119,575,625 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255107   ⟹   XP_030110967
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
GRCm386119,570,796 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255108   ⟹   XP_030110968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
GRCm386119,570,796 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255109   ⟹   XP_030110969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
GRCm386119,570,796 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255110   ⟹   XP_030110970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,035 (-)NCBI
GRCm386119,570,796 - 119,848,074 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165751   ⟹   XP_036021644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,768 - 119,825,145 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956152
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
GRCm386119,570,796 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956153
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
GRCm386119,570,796 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956154
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
GRCm386119,571,602 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956155
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
GRCm386119,570,796 - 119,848,181 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942910
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942911
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396119,547,757 - 119,825,141 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_444434 (Get FASTA)   NCBI Sequence Viewer  
  NP_835186 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505433 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505434 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505436 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505441 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110961 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110962 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110964 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110965 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110966 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110967 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110968 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110969 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110970 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021644 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAK26381 (Get FASTA)   NCBI Sequence Viewer  
  AAK26382 (Get FASTA)   NCBI Sequence Viewer  
  AAP83581 (Get FASTA)   NCBI Sequence Viewer  
  BAC33505 (Get FASTA)   NCBI Sequence Viewer  
  BAC35542 (Get FASTA)   NCBI Sequence Viewer  
  BAC65719 (Get FASTA)   NCBI Sequence Viewer  
  EDK99617 (Get FASTA)   NCBI Sequence Viewer  
  EDK99618 (Get FASTA)   NCBI Sequence Viewer  
  EDK99619 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000032279.6
  ENSMUSP00000078534
  ENSMUSP00000078534.4
  ENSMUSP00000138823
  ENSMUSP00000138823.2
  ENSMUSP00000138989.2
  ENSMUSP00000139030
  ENSMUSP00000139030.2
  ENSMUSP00000139031
  ENSMUSP00000139031.2
  ENSMUSP00000139118
  ENSMUSP00000139118.2
  ENSMUSP00000139152
  ENSMUSP00000139152.2
  ENSMUSP00000139207.2
  ENSMUSP00000139256
  ENSMUSP00000139256.2
GenBank Protein Q99MI1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_444434   ⟸   NM_053204
- Peptide Label: isoform 1
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot),   F8VPM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_835186   ⟸   NM_178085
- Peptide Label: isoform 2
- UniProtKB: Q99MI1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505436   ⟸   XM_006505373
- Peptide Label: isoform X3
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505441   ⟸   XM_006505378
- Peptide Label: isoform X8
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505433   ⟸   XM_006505370
- Peptide Label: isoform X1
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot),   F8VPM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505434   ⟸   XM_006505371
- Peptide Label: isoform X1
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot),   F8VPM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030110969   ⟸   XM_030255109
- Peptide Label: isoform X7
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030110965   ⟸   XM_030255105
- Peptide Label: isoform X3
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030110968   ⟸   XM_030255108
- Peptide Label: isoform X6
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030110964   ⟸   XM_030255104
- Peptide Label: isoform X2
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot),   V9GXP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110967   ⟸   XM_030255107
- Peptide Label: isoform X5
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030110970   ⟸   XM_030255110
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030110966   ⟸   XM_030255106
- Peptide Label: isoform X4
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot),   V9GXF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110962   ⟸   XM_030255102
- Peptide Label: isoform X1
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot),   F8VPM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110961   ⟸   XM_030255101
- Peptide Label: isoform X1
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot),   F8VPM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000139256   ⟸   ENSMUST00000184864
RefSeq Acc Id: ENSMUSP00000139030   ⟸   ENSMUST00000184838
RefSeq Acc Id: ENSMUSP00000139207   ⟸   ENSMUST00000184320
RefSeq Acc Id: ENSMUSP00000139118   ⟸   ENSMUST00000183911
RefSeq Acc Id: ENSMUSP00000032279   ⟸   ENSMUST00000032279
RefSeq Acc Id: ENSMUSP00000139031   ⟸   ENSMUST00000183703
RefSeq Acc Id: ENSMUSP00000138823   ⟸   ENSMUST00000183880
RefSeq Acc Id: ENSMUSP00000078534   ⟸   ENSMUST00000079582
RefSeq Acc Id: ENSMUSP00000138989   ⟸   ENSMUST00000185143
RefSeq Acc Id: ENSMUSP00000139152   ⟸   ENSMUST00000185139
RefSeq Acc Id: XP_036021644   ⟸   XM_036165751
- Peptide Label: isoform X4
- UniProtKB: Q99MI2 (UniProtKB/Swiss-Prot),   Q99MI1 (UniProtKB/Swiss-Prot),   Q8C7Y1 (UniProtKB/Swiss-Prot),   Q8BPL1 (UniProtKB/Swiss-Prot),   Q80TK7 (UniProtKB/Swiss-Prot),   V9GXF0 (UniProtKB/TrEMBL)
Protein Domains
FIP-RBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99MI1-F1-model_v2 AlphaFold Q99MI1 1-1120 view protein structure

Promoters
RGD ID:6838732
Promoter ID:MM_KWN:47376
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_053204,   NM_178085,   NR_030776,   UC009DML.1,   UC009DMM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366119,798,126 - 119,799,167 (+)MPROMDB
RGD ID:6890832
Promoter ID:EPDNEW_M8867
Type:initiation region
Name:Erc1_1
Description:Mus musculus ELKS/RAB6-interacting/CAST family member 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386119,848,139 - 119,848,199EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2151013 AgrOrtholog
Ensembl Genes ENSMUSG00000030172 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032279.12 UniProtKB/TrEMBL
  ENSMUST00000079582 ENTREZGENE
  ENSMUST00000079582.5 UniProtKB/Swiss-Prot
  ENSMUST00000183703 ENTREZGENE
  ENSMUST00000183703.8 UniProtKB/TrEMBL
  ENSMUST00000183880 ENTREZGENE
  ENSMUST00000183880.8 UniProtKB/TrEMBL
  ENSMUST00000183911 ENTREZGENE
  ENSMUST00000183911.8 UniProtKB/TrEMBL
  ENSMUST00000184320.8 UniProtKB/TrEMBL
  ENSMUST00000184838 ENTREZGENE
  ENSMUST00000184838.8 UniProtKB/Swiss-Prot
  ENSMUST00000184864 ENTREZGENE
  ENSMUST00000184864.8 UniProtKB/TrEMBL
  ENSMUST00000185139 ENTREZGENE
  ENSMUST00000185139.8 UniProtKB/TrEMBL
  ENSMUST00000185143.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.2440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ELKS/CAST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FIP-RBD_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:111173 UniProtKB/Swiss-Prot
MGD MGI:2151013 ENTREZGENE
NCBI Gene 111173 ENTREZGENE
PANTHER ELKS/RAB6-INTERACTING/CAST FAMILY MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ELKS/RAB6-INTERACTING/CAST PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cast UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD-FIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Erc1 PhenoGen
PROSITE FIP_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Myosin rod fragments UniProtKB/TrEMBL
  SSF144270 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tropomyosin UniProtKB/TrEMBL
UniProt F8VPM7 ENTREZGENE, UniProtKB/TrEMBL
  Q80TK7 ENTREZGENE
  Q8BPL1 ENTREZGENE
  Q8C7Y1 ENTREZGENE
  Q99MI1 ENTREZGENE
  Q99MI2 ENTREZGENE
  RB6I2_MOUSE UniProtKB/Swiss-Prot
  V9GWT6_MOUSE UniProtKB/TrEMBL
  V9GX53_MOUSE UniProtKB/TrEMBL
  V9GXF0 ENTREZGENE, UniProtKB/TrEMBL
  V9GXH3_MOUSE UniProtKB/TrEMBL
  V9GXL1_MOUSE UniProtKB/TrEMBL
  V9GXP8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q80TK7 UniProtKB/Swiss-Prot
  Q8BPL1 UniProtKB/Swiss-Prot
  Q8C7Y1 UniProtKB/Swiss-Prot
  Q99MI2 UniProtKB/Swiss-Prot