Plcd4 (phospholipase C, delta 4) - Rat Genome Database

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Gene: Plcd4 (phospholipase C, delta 4) Mus musculus
Analyze
Symbol: Plcd4
Name: phospholipase C, delta 4
RGD ID: 731869
MGI Page MGI
Description: Predicted to enable G-protein alpha-subunit binding activity; guanyl-nucleotide exchange factor activity; and phosphatidylinositol phospholipase C activity. Acts upstream of or within acrosome reaction. Predicted to be located in cytosol and endoplasmic reticulum. Predicted to be active in plasma membrane. Is expressed in male reproductive gland or organ and nervous system. Orthologous to human PLCD4 (phospholipase C delta 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4; 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-4; 4921507K24Rik; phosphoinositide phospholipase C-delta-4; phospholipase C-delta-4; PLC-delta-4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,581,175 - 74,605,137 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,582,047 - 74,606,953 (+)EnsemblGRCm39 Ensembl
GRCm38174,541,975 - 74,565,977 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,542,888 - 74,567,794 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,589,463 - 74,612,551 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,477,739 - 74,499,184 (+)NCBIMGSCv36mm8
Celera175,100,417 - 75,123,669 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Searching QTL by gene expression: analysis of diabesity. Brown AC, etal., BMC Genet 2005 Mar 10;6(1):12.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2033248   PMID:8672127   PMID:9457670   PMID:10349636   PMID:10601847   PMID:11042159   PMID:11076861   PMID:11340203   PMID:12477932   PMID:12695499   PMID:12791385   PMID:14681479  
PMID:15037625   PMID:15457340   PMID:16141072   PMID:16141073   PMID:16998201   PMID:18177742   PMID:18754795   PMID:21873635   PMID:21974932   PMID:24194600   PMID:27062607  


Genomics

Comparative Map Data
Plcd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,581,175 - 74,605,137 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,582,047 - 74,606,953 (+)EnsemblGRCm39 Ensembl
GRCm38174,541,975 - 74,565,977 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,542,888 - 74,567,794 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,589,463 - 74,612,551 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,477,739 - 74,499,184 (+)NCBIMGSCv36mm8
Celera175,100,417 - 75,123,669 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
PLCD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,607,899 - 218,637,175 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,607,855 - 218,637,184 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,472,622 - 219,501,898 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,180,876 - 219,210,148 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,298,136 - 219,327,409NCBI
Celera2213,240,381 - 213,269,662 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,325,808 - 211,355,366 (+)NCBIHuRef
CHM1_12219,479,454 - 219,508,883 (+)NCBICHM1_1
T2T-CHM13v2.02219,094,436 - 219,123,729 (+)NCBIT2T-CHM13v2.0
Plcd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,564,616 - 83,613,742 (+)NCBIGRCr8
mRatBN7.2976,115,523 - 76,158,602 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,117,168 - 76,142,453 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,562,298 - 84,587,522 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,691,247 - 89,716,473 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,077,430 - 88,102,653 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,816,395 - 81,844,364 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,816,872 - 81,844,364 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,579,905 - 81,608,512 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,878,506 - 73,905,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,025,487 - 74,052,109 (+)NCBI
Celera973,690,442 - 73,715,587 (+)NCBICelera
Cytogenetic Map9q33NCBI
Plcd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,787,677 - 14,806,485 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,775,119 - 14,812,872 (-)NCBIChiLan1.0ChiLan1.0
PLCD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,228,648 - 121,267,960 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,243,168 - 121,282,926 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,864,706 - 105,895,114 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,461,261 - 224,490,345 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,461,261 - 224,490,345 (+)Ensemblpanpan1.1panPan2
PLCD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,221,329 - 25,244,492 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,226,244 - 25,244,914 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,041,363 - 26,064,404 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,237,345 - 25,260,497 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,237,771 - 25,260,768 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,142,268 - 25,165,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,076,485 - 25,099,551 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,096,641 - 25,120,171 (+)NCBIUU_Cfam_GSD_1.0
Plcd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,714,969 - 174,756,001 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,058,611 - 1,099,577 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,058,092 - 1,097,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLCD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,626,938 - 120,688,112 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,660,549 - 120,695,731 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,641,398 - 133,676,142 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLCD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,512,156 - 104,540,555 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,512,678 - 104,542,531 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,863,854 - 94,893,228 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plcd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,418,922 - 6,442,418 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,418,359 - 6,446,848 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plcd4
557 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4183
Count of miRNA genes:736
Interacting mature miRNAs:953
Transcripts:ENSMUST00000027362, ENSMUST00000067916, ENSMUST00000113745, ENSMUST00000113747, ENSMUST00000113749, ENSMUST00000113750, ENSMUST00000135111, ENSMUST00000141412, ENSMUST00000152707
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse

Markers in Region
AI045490  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,565,742 - 74,565,951UniSTSGRCm38
MGSCv37174,612,316 - 74,612,525UniSTSGRCm37
Celera175,123,434 - 75,123,643UniSTS
Cytogenetic Map1C3UniSTS
cM Map141.5UniSTS
cM Map139.2UniSTS
Plcd4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C3UniSTS
cM Map138.54UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_148937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001783208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_865222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY033991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000027362   ⟹   ENSMUSP00000027362
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,583,523 - 74,605,136 (+)Ensembl
GRCm38.p6 Ensembl174,544,364 - 74,565,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000067916   ⟹   ENSMUSP00000064413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,582,047 - 74,606,953 (+)Ensembl
GRCm38.p6 Ensembl174,542,888 - 74,567,794 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,582,062 - 74,599,765 (+)Ensembl
GRCm38.p6 Ensembl174,542,903 - 74,560,606 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113747   ⟹   ENSMUSP00000109376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,582,062 - 74,605,136 (+)Ensembl
GRCm38.p6 Ensembl174,542,903 - 74,565,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113749   ⟹   ENSMUSP00000109378
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,582,047 - 74,606,953 (+)Ensembl
GRCm38.p6 Ensembl174,542,888 - 74,567,794 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113750   ⟹   ENSMUSP00000109379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,582,062 - 74,605,136 (+)Ensembl
GRCm38.p6 Ensembl174,542,903 - 74,565,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,603,596 - 74,604,785 (+)Ensembl
GRCm38.p6 Ensembl174,564,437 - 74,565,626 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141412   ⟹   ENSMUSP00000115322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,582,047 - 74,606,953 (+)Ensembl
GRCm38.p6 Ensembl174,542,888 - 74,567,794 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152707   ⟹   ENSMUSP00000121732
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,583,523 - 74,605,136 (+)Ensembl
GRCm38.p6 Ensembl174,544,364 - 74,565,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,583,519 - 74,585,430 (+)Ensembl
GRCm38.p6 Ensembl174,544,360 - 74,546,271 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,599,586 - 74,604,460 (+)Ensembl
GRCm38.p6 Ensembl174,560,427 - 74,565,301 (+)Ensembl
RefSeq Acc Id: NM_001081456   ⟹   NP_001074925
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,582,048 - 74,605,136 (+)NCBI
GRCm38174,542,889 - 74,565,977 (+)NCBI
MGSCv37174,589,463 - 74,612,551 (+)RGD
Celera175,100,417 - 75,123,669 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_148937   ⟹   NP_683739
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,583,519 - 74,605,136 (+)NCBI
GRCm38174,544,360 - 74,565,977 (+)NCBI
MGSCv37174,589,463 - 74,612,551 (+)RGD
Celera175,100,417 - 75,123,669 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006495783   ⟹   XP_006495846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,178 - 74,605,136 (+)NCBI
GRCm38174,541,976 - 74,565,977 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495784   ⟹   XP_006495847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,583,530 - 74,605,136 (+)NCBI
GRCm38174,544,371 - 74,565,974 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495785   ⟹   XP_006495848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,177 - 74,605,136 (+)NCBI
GRCm38174,541,976 - 74,565,974 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495787   ⟹   XP_006495850
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,175 - 74,605,136 (+)NCBI
GRCm38174,541,975 - 74,565,974 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495788   ⟹   XP_006495851
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,183 - 74,605,137 (+)NCBI
GRCm38174,541,977 - 74,565,977 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495789   ⟹   XP_006495852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,181 - 74,605,136 (+)NCBI
GRCm38174,541,976 - 74,565,974 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319346   ⟹   XP_017174835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,184 - 74,605,137 (+)NCBI
GRCm38174,541,977 - 74,565,977 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162780   ⟹   XP_036018673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,181 - 74,605,137 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162781   ⟹   XP_036018674
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,178 - 74,605,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001783208
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,179 - 74,605,136 (+)NCBI
GRCm38174,541,977 - 74,565,977 (+)NCBI
Sequence:
RefSeq Acc Id: XR_865222
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,581,176 - 74,605,136 (+)NCBI
GRCm38174,541,976 - 74,565,977 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001074925   ⟸   NM_001081456
- Peptide Label: isoform 1
- UniProtKB: Q8K3R3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_683739   ⟸   NM_148937
- Peptide Label: isoform 2
- UniProtKB: Q8CAB1 (UniProtKB/Swiss-Prot),   Q6NZF7 (UniProtKB/Swiss-Prot),   Q3USN9 (UniProtKB/Swiss-Prot),   Q9CUC1 (UniProtKB/Swiss-Prot),   Q8K3R3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006495848   ⟸   XM_006495785
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006495846   ⟸   XM_006495783
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006495850   ⟸   XM_006495787
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006495851   ⟸   XM_006495788
- Peptide Label: isoform X3
- UniProtKB: Q8CAB1 (UniProtKB/Swiss-Prot),   Q6NZF7 (UniProtKB/Swiss-Prot),   Q3USN9 (UniProtKB/Swiss-Prot),   Q9CUC1 (UniProtKB/Swiss-Prot),   Q8K3R3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006495852   ⟸   XM_006495789
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006495847   ⟸   XM_006495784
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017174835   ⟸   XM_017319346
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSMUSP00000027362   ⟸   ENSMUST00000027362
RefSeq Acc Id: ENSMUSP00000109376   ⟸   ENSMUST00000113747
RefSeq Acc Id: ENSMUSP00000109378   ⟸   ENSMUST00000113749
RefSeq Acc Id: ENSMUSP00000109379   ⟸   ENSMUST00000113750
RefSeq Acc Id: ENSMUSP00000121732   ⟸   ENSMUST00000152707
RefSeq Acc Id: ENSMUSP00000064413   ⟸   ENSMUST00000067916
RefSeq Acc Id: ENSMUSP00000115322   ⟸   ENSMUST00000141412
RefSeq Acc Id: XP_036018674   ⟸   XM_036162781
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036018673   ⟸   XM_036162780
- Peptide Label: isoform X4
Protein Domains
C2   EF-hand   PH   PI-PLC X-box   PI-PLC Y-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K3R3-F1-model_v2 AlphaFold Q8K3R3 1-807 view protein structure

Promoters
RGD ID:6874124
Promoter ID:EPDNEW_M491
Type:initiation region
Name:Plcd4_1
Description:Mus musculus phospholipase C, delta 4 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M492  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,542,893 - 74,542,953EPDNEW
RGD ID:6874082
Promoter ID:EPDNEW_M492
Type:initiation region
Name:Plcd4_2
Description:Mus musculus phospholipase C, delta 4 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M491  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,544,351 - 74,544,411EPDNEW
RGD ID:6818246
Promoter ID:MM_KWN:1177
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000067916,   ENSMUST00000113745,   ENSMUST00000113749,   ENSMUST00000113750,   NM_001081456,   OTTMUST00000051215
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,589,041 - 74,589,541 (+)MPROMDB
RGD ID:6818247
Promoter ID:MM_KWN:1180
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000051219
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,610,851 - 74,611,351 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107469 AgrOrtholog
Ensembl Genes ENSMUSG00000026173 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027362 ENTREZGENE
  ENSMUST00000027362.14 UniProtKB/Swiss-Prot
  ENSMUST00000067916.13 UniProtKB/Swiss-Prot
  ENSMUST00000113747 ENTREZGENE
  ENSMUST00000113747.8 UniProtKB/Swiss-Prot
  ENSMUST00000113750.8 UniProtKB/Swiss-Prot
  ENSMUST00000141412.8 UniProtKB/TrEMBL
  ENSMUST00000152707.8 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot
  3.20.20.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot
  C2_domain_sf UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI-PLC_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLC-like_Pdiesterase_TIM-brl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLC_EF-hand-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase_C_PInositol-sp_X_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase_C_Pinositol-sp_Y UniProtKB/Swiss-Prot
KEGG Report mmu:18802 UniProtKB/Swiss-Prot
MGD MGI:107469 ENTREZGENE
NCBI Gene 18802 ENTREZGENE
PANTHER PTHR10336 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10336:SF31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot
  PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI-PLC-X UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PI-PLC-Y UniProtKB/Swiss-Prot
PhenoGen Plcd4 PhenoGen
PRINTS PHPHLIPASEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIPLC_X_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIPLC_Y_DOMAIN UniProtKB/Swiss-Prot
  PS50004 UniProtKB/Swiss-Prot
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLCXc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLCYc UniProtKB/Swiss-Prot
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00239 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49562 UniProtKB/Swiss-Prot
  SSF51695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D6RGN2_MOUSE UniProtKB/TrEMBL
  PLCD4_MOUSE UniProtKB/Swiss-Prot
  Q3USN9 ENTREZGENE
  Q6NZF7 ENTREZGENE
  Q8CAB1 ENTREZGENE
  Q8K3R3 ENTREZGENE
  Q9CUC1 ENTREZGENE
UniProt Secondary Q3USN9 UniProtKB/Swiss-Prot
  Q6NZF7 UniProtKB/Swiss-Prot
  Q8CAB1 UniProtKB/Swiss-Prot
  Q9CUC1 UniProtKB/Swiss-Prot