Abcb6 (ATP-binding cassette, sub-family B member 6) - Rat Genome Database

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Gene: Abcb6 (ATP-binding cassette, sub-family B member 6) Mus musculus
Analyze
Symbol: Abcb6
Name: ATP-binding cassette, sub-family B member 6 (Ensembl:ATP-binding cassette, sub-family B (MDR/TAP), member 6)
RGD ID: 731736
MGI Page MGI
Description: Enables ABC-type transporter activity. Involved in porphyrin-containing compound metabolic process. Located in endosome and extracellular exosome. Is expressed in several structures, including adrenal gland; alimentary system; central nervous system; hemolymphoid system gland; and liver. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1200005B17Rik; ABC-type heme transporter ABCB6; ATP-binding cassette sub-family B member 6; ATP-binding cassette sub-family B member 6, mitochondrial; ATP-binding cassette, sub-family B (MDR/TAP), member 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,148,284 - 75,157,066 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,148,361 - 75,157,036 (-)EnsemblGRCm39 Ensembl
GRCm38175,171,640 - 75,180,392 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,171,717 - 75,180,392 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,168,214 - 75,176,857 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,054,787 - 75,063,430 (-)NCBIMGSCv36mm8
Celera175,662,505 - 75,671,146 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
3-methylcholanthrene  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acrylamide  (ISO)
allethrin  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (ISO)
bupropion  (EXP)
buta-1,3-diene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP)
chloroacetaldehyde  (ISO)
chloroprene  (EXP)
chlorpromazine  (ISO)
chlorpyrifos  (EXP)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (ISO)
clothianidin  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
dextran sulfate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (EXP)
ethyl methanesulfonate  (ISO)
fenofibrate  (ISO)
fenvalerate  (ISO)
ferroheme b  (EXP,ISO)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
heme b  (EXP,ISO)
ifosfamide  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
melatonin  (EXP)
mercury dibromide  (ISO)
metformin  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
midazolam  (EXP)
nefazodone  (ISO)
nimesulide  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
p-chloromercuribenzoic acid  (ISO)
p-toluidine  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrazinecarboxamide  (ISO)
pyrethrins  (ISO)
reactive oxygen species  (ISO)
rifampicin  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP,ISO)
sodium dodecyl sulfate  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
troglitazone  (ISO)
Tungsten carbide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
zinc dichloride  (ISO)
zoledronic acid  (ISO)
Zoxazolamine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16467350  
PMID:16602821   PMID:17006453   PMID:18614015   PMID:18799693   PMID:21199866   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22294697   PMID:22655043   PMID:22761424   PMID:23519333  
PMID:24504733   PMID:25623066   PMID:27507172   PMID:30973865   PMID:32099945   PMID:32325033  


Genomics

Comparative Map Data
Abcb6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,148,284 - 75,157,066 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,148,361 - 75,157,036 (-)EnsemblGRCm39 Ensembl
GRCm38175,171,640 - 75,180,392 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,171,717 - 75,180,392 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,168,214 - 75,176,857 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,054,787 - 75,063,430 (-)NCBIMGSCv36mm8
Celera175,662,505 - 75,671,146 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.62NCBI
ABCB6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,209,772 - 219,218,958 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,209,772 - 219,218,994 (-)EnsemblGRCh38hg38GRCh38
GRCh372220,074,494 - 220,083,680 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,782,738 - 219,791,916 (-)NCBINCBI36Build 36hg18NCBI36
Build 342219,899,998 - 219,909,177NCBI
Celera2213,844,200 - 213,853,379 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,927,785 - 211,937,009 (-)NCBIHuRef
CHM1_12220,080,323 - 220,089,548 (-)NCBICHM1_1
T2T-CHM13v2.02219,694,538 - 219,703,724 (-)NCBIT2T-CHM13v2.0
Abcb6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8984,117,222 - 84,125,939 (-)NCBIGRCr8
mRatBN7.2976,668,554 - 76,677,263 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,668,554 - 76,676,924 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx985,113,131 - 85,121,409 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,242,022 - 90,250,300 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,628,235 - 88,636,513 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,373,950 - 82,382,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,373,946 - 82,382,272 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,143,211 - 82,151,489 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,454,805 - 74,463,083 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera974,239,003 - 74,247,281 (-)NCBICelera
Cytogenetic Map9q33NCBI
Abcb6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,215,408 - 14,222,172 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,215,104 - 14,222,338 (+)NCBIChiLan1.0ChiLan1.0
ABCB6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,840,220 - 121,849,516 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,855,185 - 121,864,481 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,467,345 - 106,476,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B225,058,771 - 225,067,626 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,058,771 - 225,067,626 (-)Ensemblpanpan1.1panPan2
ABCB6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,760,478 - 25,767,753 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,760,477 - 25,769,841 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,586,363 - 26,593,649 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,775,702 - 25,782,979 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,775,712 - 25,783,009 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,680,124 - 25,687,392 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,615,230 - 25,622,496 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,636,067 - 25,643,357 (-)NCBIUU_Cfam_GSD_1.0
Abcb6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,285,868 - 175,292,790 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,625,374 - 1,635,694 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,628,649 - 1,635,599 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCB6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,246,187 - 121,254,331 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,246,180 - 121,254,350 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,280,959 - 134,289,134 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCB6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,113,729 - 105,122,948 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10105,112,797 - 105,122,358 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,273,392 - 94,282,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcb6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248235,797,943 - 5,808,448 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248235,797,897 - 5,805,055 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Abcb6
260 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:854
Count of miRNA genes:467
Interacting mature miRNAs:553
Transcripts:ENSMUST00000027396, ENSMUST00000159219, ENSMUST00000160081, ENSMUST00000160757, ENSMUST00000161103, ENSMUST00000161215
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse

Markers in Region
RH136427  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38175,180,924 - 75,181,114UniSTSGRCm38
MGSCv37175,177,498 - 75,177,688UniSTSGRCm37
Celera175,671,781 - 75,671,971UniSTS
Cytogenetic Map1C3UniSTS
UniSTS:234155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38175,171,353 - 75,171,565UniSTSGRCm38
MGSCv37175,167,927 - 75,168,139UniSTSGRCm37
Celera175,662,218 - 75,662,430UniSTS
Cytogenetic Map1C3UniSTS
RH127040  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38175,171,347 - 75,171,553UniSTSGRCm38
MGSCv37175,167,921 - 75,168,127UniSTSGRCm37
Celera175,662,212 - 75,662,418UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH11090.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_023732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC166150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF045562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI843102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000027396   ⟹   ENSMUSP00000027396
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,148,361 - 75,157,036 (-)Ensembl
GRCm38.p6 Ensembl175,171,717 - 75,180,392 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,149,364 - 75,156,930 (-)Ensembl
GRCm38.p6 Ensembl175,172,720 - 75,180,286 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,148,363 - 75,156,930 (-)Ensembl
GRCm38.p6 Ensembl175,171,719 - 75,180,286 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,152,196 - 75,155,593 (-)Ensembl
GRCm38.p6 Ensembl175,175,552 - 75,178,949 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,154,554 - 75,157,020 (-)Ensembl
GRCm38.p6 Ensembl175,177,910 - 75,180,376 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161215   ⟹   ENSMUSP00000124630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,148,402 - 75,149,513 (-)Ensembl
GRCm38.p6 Ensembl175,171,758 - 75,172,869 (-)Ensembl
RefSeq Acc Id: NM_023732   ⟹   NP_076221
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,148,284 - 75,157,036 (-)NCBI
GRCm38175,171,640 - 75,180,392 (-)NCBI
MGSCv37175,168,214 - 75,176,857 (-)RGD
Celera175,662,505 - 75,671,146 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496552   ⟹   XP_006496615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,148,359 - 75,157,066 (-)NCBI
GRCm38175,171,715 - 75,180,277 (-)NCBI
Sequence:
RefSeq Acc Id: NP_076221   ⟸   NM_023732
- UniProtKB: Q3U7N5 (UniProtKB/Swiss-Prot),   Q3UAZ6 (UniProtKB/Swiss-Prot),   Q9DC29 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496615   ⟸   XM_006496552
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000027396   ⟸   ENSMUST00000027396
RefSeq Acc Id: ENSMUSP00000124630   ⟸   ENSMUST00000161215
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DC29-F1-model_v2 AlphaFold Q9DC29 1-842 view protein structure

Promoters
RGD ID:6817170
Promoter ID:MM_KWN:1215
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000027396,   UC007BNY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36175,176,721 - 75,177,822 (-)MPROMDB
RGD ID:6874128
Promoter ID:EPDNEW_M514
Type:initiation region
Name:Abcb6_1
Description:Mus musculus ATP-binding cassette, sub-family B (MDR/TAP), member6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38175,180,392 - 75,180,452EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921354 AgrOrtholog
Ensembl Genes ENSMUSG00000026198 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027396 ENTREZGENE
  ENSMUST00000027396.15 UniProtKB/Swiss-Prot
  ENSMUST00000161215.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1560.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot
  ABC1_TM_dom UniProtKB/Swiss-Prot
  ABC1_TM_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/Swiss-Prot
  ABC_transporter_CS UniProtKB/Swiss-Prot
  MTABC_N UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Type_I_exporter UniProtKB/Swiss-Prot
KEGG Report mmu:74104 UniProtKB/Swiss-Prot
MGD MGI:1921354 ENTREZGENE
NCBI Gene 74104 ENTREZGENE
PANTHER ABC TRANSPORTER DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 6 UniProtKB/Swiss-Prot
  PTHR24221 UniProtKB/Swiss-Prot
  PTHR45136:SF2 UniProtKB/TrEMBL
Pfam ABC_membrane UniProtKB/Swiss-Prot
  ABC_tran UniProtKB/Swiss-Prot
  MTABC_N UniProtKB/Swiss-Prot
PhenoGen Abcb6 PhenoGen
PROSITE ABC_TM1F UniProtKB/Swiss-Prot
  ABC_TRANSPORTER_1 UniProtKB/Swiss-Prot
  ABC_TRANSPORTER_2 UniProtKB/Swiss-Prot
SMART AAA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90123 UniProtKB/Swiss-Prot
UniProt ABCB6_MOUSE UniProtKB/Swiss-Prot
  F6SGP4_MOUSE UniProtKB/TrEMBL
  O70322_MOUSE UniProtKB/TrEMBL
  Q3U7N5 ENTREZGENE
  Q3UAZ6 ENTREZGENE
  Q9DC29 ENTREZGENE
UniProt Secondary Q3U7N5 UniProtKB/Swiss-Prot
  Q3UAZ6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Abcb6  ATP-binding cassette, sub-family B member 6  Abcb6  ATP-binding cassette, sub-family B (MDR/TAP), member 6  Symbol and/or name change 5135510 APPROVED