Cyp3a13 (cytochrome P450, family 3, subfamily a, polypeptide 13) - Rat Genome Database

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Gene: Cyp3a13 (cytochrome P450, family 3, subfamily a, polypeptide 13) Mus musculus
Analyze
Symbol: Cyp3a13
Name: cytochrome P450, family 3, subfamily a, polypeptide 13
RGD ID: 731686
MGI Page MGI
Description: Predicted to enable several functions, including caffeine oxidase activity; iron ion binding activity; and monooxygenase activity. Acts upstream of or within positive regulation of gene expression. Predicted to be located in cytoplasm. Is expressed in several structures, including heart; liver; lung; metanephros; and spleen. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma; acute lymphoblastic leukemia; chronic myeloid leukemia; essential hypertension; and familial Mediterranean fever. Orthologous to several human genes including CYP3A7 (cytochrome P450 family 3 subfamily A member 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CYPIIIA13; cytochrome P450 3A13; cytochrome P450, steroid inducible 3a13; II; IIIAm2
RGD Orthologs
Human
Human
Rat
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,891,195 - 137,923,872 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5137,891,194 - 137,919,881 (-)EnsemblGRCm39 Ensembl
GRCm385137,892,933 - 137,925,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,892,932 - 137,921,619 (-)EnsemblGRCm38mm10GRCm38
MGSCv375138,334,161 - 138,362,847 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,122,721 - 138,151,405 (-)NCBIMGSCv36mm8
Celera5134,879,058 - 134,907,700 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (EXP)
(+)-epicatechin-3-O-gallate  (EXP)
(+)-Tetrandrine  (ISO)
(-)-epigallocatechin 3-gallate  (EXP)
(1->4)-beta-D-glucan  (EXP)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
(E)-thiamethoxam  (ISO)
(R,R,R)-alpha-tocopherol  (EXP,ISO)
1,1,1-Trichloro-2-(4-hydroxyphenyl)-2-(4-methoxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,4-naphthoquinone  (ISO)
1,8-cineole  (ISO)
1-hydroxymidazolam  (ISO)
1-naphthol  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-D  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2,6-dinitrotoluene  (ISO)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-methyl-3H-imidazo[4,5-f]quinolin-2-amine  (ISO)
3-methylcholanthrene  (ISO)
4'-tert-Butyl-2',6'-dimethyl-3',5'-dinitroacetophenone  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4-[(1E)-1,2-diphenylbut-1-en-1-yl]phenol  (ISO)
4-Hydroxy-N-desmethyltamoxifen  (ISO)
4-hydroxymidazolam  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-hydroxydiclofenac  (ISO)
5-Hydroxythalidomide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
6-propyl-2-thiouracil  (ISO)
6beta-hydroxytestosterone  (ISO)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
aconitine  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin G1  (ISO)
aldehydo-D-glucose  (EXP)
alfentanil  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
alpha-tocotrienol  (ISO)
alprazolam  (ISO)
amiodarone  (ISO)
amitriptyline  (ISO)
amlodipine  (ISO)
ammonium chloride  (ISO)
amodiaquine  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arotinoid acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atazanavir sulfate  (ISO)
atrazine  (EXP)
azoxystrobin  (ISO)
beclomethasone  (ISO)
Benoxacor  (EXP)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (ISO)
bosentan  (ISO)
bromobenzene  (ISO)
budesonide  (ISO)
bupivacaine  (ISO)
buspirone  (ISO)
butyric acid  (ISO)
cadmium dichloride  (ISO)
calciol  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
carbosulfan  (ISO)
carfentanil  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
CHIR 99021  (ISO)
chloroethene  (EXP)
chlorpromazine  (ISO)
chlorpyrifos  (ISO)
chlorzoxazone  (ISO)
cisplatin  (EXP,ISO)
citral  (ISO)
clobetasol  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
clopidogrel  (ISO)
clothianidin  (ISO)
clotrimazole  (ISO)
clozapine  (ISO)
Clozapine N-oxide  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
cortisol  (ISO)
Cuprizon  (ISO)
cyazofamid  (ISO)
cyclophosphamide  (EXP,ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
cypermethrin  (EXP)
cyproconazole  (ISO)
D-glucose  (EXP)
dabrafenib  (ISO)
decabromodiphenyl ether  (ISO)
Dechloroethylcyclophosphamide  (ISO)
deguelin  (ISO)
dehydroepiandrosterone  (ISO)
dehydroepiandrosterone sulfate  (ISO)
delta-tocotrienol  (ISO)
deoxycholic acid  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
dextromethorphan  (ISO)
dextrorphan  (ISO)
diazinon  (ISO)
diclofenac  (EXP)
dicrotophos  (ISO)
diltiazem  (ISO)
dimethyl sulfoxide  (ISO)
diosmetin  (ISO)
disodium selenite  (EXP)
diuron  (ISO)
Droloxifene  (ISO)
dronedarone  (ISO)
elemental selenium  (ISO)
emodin  (ISO)
endosulfan  (ISO)
enilconazole  (ISO)
eplerenone  (ISO)
erythromycin A  (ISO)
erythromycin estolate  (ISO)
estriol  (ISO)
estrone  (ISO)
ethanol  (EXP,ISO)
etoposide  (ISO)
fenofibrate  (ISO)
fenpyroximate  (ISO)
fenthion  (ISO)
fimasartan  (ISO)
fipronil  (ISO)
flavonol  (ISO)
fluconazole  (ISO)
flunisolide  (ISO)
flunitrazepam  (ISO)
fluoxetine  (ISO)
fluticasone  (ISO)
fluvoxamine  (ISO)
folic acid  (EXP)
fructose  (EXP)
fumonisin B1  (EXP)
gallocatechin  (EXP)
gamma-hexachlorocyclohexane  (ISO)
gefitinib  (ISO)
Gelsemine  (ISO)
genistein  (EXP,ISO)
geranial  (ISO)
geraniol  (ISO)
glucose  (EXP)
glutathione  (ISO)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
haloperidol  (ISO)
helenalin  (ISO)
Heliotrine  (ISO)
Hexachloro-1,3-butadiene  (ISO)
hydroquinone  (ISO)
Hypaconitine  (ISO)
hyperforin  (ISO)
Icaritin  (ISO)
ifosfamide  (ISO)
imidacloprid  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
inulin  (EXP)
irinotecan  (ISO)
isotretinoin  (ISO)
ketoconazole  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-ethionine  (ISO)
lansoprazole  (ISO)
lapatinib  (ISO)
Lasiocarpine  (ISO)
lead diacetate  (ISO)
lidocaine  (ISO)
lipopolysaccharide  (ISO)
lithocholic acid  (ISO)
luteolin  (ISO)
lycopene  (EXP)
malathion  (ISO)
Meclizine  (ISO)
MeIQ  (ISO)
MeIQx  (ISO)
mercury dichloride  (ISO)
methoxychlor  (ISO)
midazolam  (ISO)
mifepristone  (ISO)
monocrotaline  (ISO)
monosodium L-glutamate  (EXP,ISO)
mycophenolic acid  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-desmethylclozapine  (ISO)
N-Desmethyltamoxifen  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
N-Vinyl-2-pyrrolidone  (ISO)
naphthalene  (ISO)
nefazodone  (ISO)
nelfinavir  (ISO)
nevirapine  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
Norfluoxetine  (ISO)
nortriptyline  (ISO)
norverapamil  (ISO)
O-methyleugenol  (ISO)
obeticholic acid  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
omeprazole  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraoxon  (ISO)
parathion  (ISO)
PD 0325901  (ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (ISO)
phencyclidine  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP,ISO)
phenytoin  (EXP,ISO)
phlorizin  (EXP)
physostigmine  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
prochloraz  (ISO)
progesterone  (ISO)
pyrazinecarboxamide  (ISO)
quercetin  (EXP,ISO)
quinacrine  (ISO)
rabeprazole  (ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (ISO)
Rebamipide  (ISO)
reserpine  (ISO)
riddelliine  (ISO)
rifampicin  (ISO)
rifaximin  (ISO)
risperidone  (ISO)
ritonavir  (ISO)
rivaroxaban  (ISO)
romidepsin  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
selenium atom  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sorafenib  (ISO)
sulfaphenazole  (ISO)
tacrolimus hydrate  (ISO)
tamarixetin  (ISO)
tamoxifen  (EXP,ISO)
tanespimycin  (ISO)
tartrazine  (ISO)
tebuconazole  (ISO)
tebufenpyrad  (ISO)
teniposide  (ISO)
Terfenadine  (ISO)
testosterone  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
tetrodotoxin  (ISO)
thalidomide  (ISO)
thiacloprid  (ISO)
thiamethoxam  (ISO)
thioacetamide  (ISO)
Thiotepa  (ISO)
ticlopidine  (ISO)
titanium dioxide  (EXP)
trabectedin  (ISO)
trazodone  (ISO)
triadimefon  (EXP)
triamcinolone acetonide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (EXP)
Tris(1-aziridinyl)phosphine oxide  (ISO)
troglitazone  (ISO)
troleandomycin  (ISO)
undecane  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
vanadyl sulfate  (ISO)
verapamil  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
warfarin  (ISO)
XAV939  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Do SLCO1B3 (T334G) and CYP3A5*3 polymorphisms affect response in Egyptian chronic myeloid leukemia patients receiving imatinib therapy? Bedewy AM and El-Maghraby SM, Hematology. 2013 Jul;18(4):211-6. doi: 10.1179/1607845412Y.0000000067. Epub 2013 Jan 31.
2. Increased risk of vincristine neurotoxicity associated with low CYP3A5 expression genotype in children with acute lymphoblastic leukemia. Egbelakin A, etal., Pediatr Blood Cancer. 2011 Mar;56(3):361-7. doi: 10.1002/pbc.22845. Epub 2010 Nov 11.
3. Impact of CYP3A5*3 and CYP2C8-HapC on paclitaxel/carboplatin-induced myelosuppression in patients with ovarian cancer. Green H, etal., J Pharm Sci. 2011 Oct;100(10):4205-9. doi: 10.1002/jps.22680. Epub 2011 Jun 23.
4. [Expression of CYP3A5 mRNA in children with acute leukemia]. Huang Z, etal., Zhongguo Dang Dai Er Ke Za Zhi. 2009 Jul;11(7):549-54.
5. Clinical relevance of a pharmacogenetic approach using multiple candidate genes to predict response and resistance to imatinib therapy in chronic myeloid leukemia. Kim DH, etal., Clin Cancer Res. 2009 Jul 15;15(14):4750-8. doi: 10.1158/1078-0432.CCR-09-0145. Epub 2009 Jul 7.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Analysis of CYP3A5*3 and CYP3A5*6 gene polymorphisms in Indian chronic myeloid leukemia patients. Sailaja K, etal., Asian Pac J Cancer Prev. 2010;11(3):781-4.
13. CYP3A5 and NAT2 gene polymorphisms: role in childhood acute lymphoblastic leukemia risk and treatment outcome. Silveira VS, etal., Mol Cell Biochem. 2012 May;364(1-2):217-23. doi: 10.1007/s11010-011-1220-8. Epub 2012 Jan 4.
14. Side effects after docetaxel treatment in Taiwanese breast cancer patients with CYP3A4, CYP3A5, and ABCB1 gene polymorphisms. Tsai SM, etal., Clin Chim Acta. 2009 Jun 27;404(2):160-5. doi: 10.1016/j.cca.2009.03.038. Epub 2009 Mar 28.
Additional References at PubMed
PMID:7678494   PMID:7803471   PMID:7813478   PMID:10349636   PMID:10464095   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12745259   PMID:12958193  
PMID:12964049   PMID:14509827   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15533722   PMID:16141072   PMID:16141073   PMID:17975676   PMID:18794335   PMID:19920203   PMID:21193583  
PMID:21267068   PMID:21351274   PMID:21677750   PMID:21873635   PMID:23090875   PMID:23125282   PMID:23656416   PMID:23709690   PMID:26265742   PMID:26903378   PMID:27137100   PMID:27638959  
PMID:29125184   PMID:30910785   PMID:32087611   PMID:32130917  


Genomics

Comparative Map Data
Cyp3a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,891,195 - 137,923,872 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5137,891,194 - 137,919,881 (-)EnsemblGRCm39 Ensembl
GRCm385137,892,933 - 137,925,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,892,932 - 137,921,619 (-)EnsemblGRCm38mm10GRCm38
MGSCv375138,334,161 - 138,362,847 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,122,721 - 138,151,405 (-)NCBIMGSCv36mm8
Celera5134,879,058 - 134,907,700 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.89NCBI
CYP3A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,648,194 - 99,679,996 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,648,194 - 99,679,996 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,245,817 - 99,277,619 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,083,753 - 99,115,557 (-)NCBINCBI36Build 36hg18NCBI36
Build 34798,890,467 - 98,922,257NCBI
Celera793,980,042 - 94,011,861 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,882,179 - 93,914,147 (-)NCBIHuRef
CHM1_1799,175,907 - 99,207,720 (-)NCBICHM1_1
T2T-CHM13v2.07100,887,521 - 100,919,516 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,605,608 - 98,637,429 (-)NCBI
CYP3A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,705,036 - 99,735,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,705,036 - 99,735,196 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,302,659 - 99,332,819 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,140,596 - 99,170,757 (-)NCBINCBI36Build 36hg18NCBI36
Build 34798,947,310 - 98,977,472NCBI
Celera794,036,903 - 94,067,071 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,918,827 - 93,969,254 (-)NCBIHuRef
CHM1_1799,232,763 - 99,262,931 (-)NCBICHM1_1
T2T-CHM13v2.07100,944,554 - 100,974,716 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,662,471 - 98,692,639 (-)NCBI
Cyp3a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81221,919,955 - 21,960,160 (-)NCBIGRCr8
mRatBN7.21216,806,222 - 16,846,428 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1216,806,207 - 16,846,422 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,636,912 - 17,677,023 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,260,644 - 18,300,755 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,314,042 - 17,354,154 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,074,288 - 19,114,491 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,074,583 - 19,114,399 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,132,926 - 21,173,248 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,164,384 - 17,204,589 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11217,153,354 - 17,193,208 (+)NCBI
Celera1218,744,706 - 18,784,438 (-)NCBICelera
Cytogenetic Map12q11NCBI
CYP3A29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl36,738,486 - 6,778,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.136,738,502 - 6,778,121 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1

Variants

.
Variants in Cyp3a13
1161 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:343
Count of miRNA genes:268
Interacting mature miRNAs:287
Transcripts:ENSMUST00000031741
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
13464143Bbaa2b_mB.burgdorferi-associated arthritis 2b (mouse)5133052969140709801Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse

Markers in Region
Cyp3a13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map5 UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000031741   ⟹   ENSMUSP00000031741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5137,891,194 - 137,919,881 (-)Ensembl
GRCm38.p6 Ensembl5137,892,932 - 137,921,619 (-)Ensembl
RefSeq Acc Id: NM_007819   ⟹   NP_031845
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395137,891,195 - 137,919,881 (-)NCBI
GRCm385137,892,933 - 137,921,619 (-)ENTREZGENE
MGSCv375138,334,161 - 138,362,847 (-)RGD
Celera5134,879,058 - 134,907,700 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030254121   ⟹   XP_030109981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395137,892,106 - 137,923,872 (-)NCBI
GRCm385137,893,963 - 137,925,610 (-)NCBI
Sequence:
RefSeq Acc Id: NP_031845   ⟸   NM_007819
- UniProtKB: Q64464 (UniProtKB/Swiss-Prot),   Q3UW87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109981   ⟸   XM_030254121
- Peptide Label: isoform X1
- UniProtKB: Q64464 (UniProtKB/Swiss-Prot),   Q3UW87 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000031741   ⟸   ENSMUST00000031741

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q64464-F1-model_v2 AlphaFold Q64464 1-503 view protein structure

Promoters
RGD ID:6888478
Promoter ID:EPDNEW_M7690
Type:multiple initiation site
Name:Cyp3a13_1
Description:Mus musculus cytochrome P450, family 3, subfamily a, polypeptide13 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385137,921,619 - 137,921,679EPDNEW
RGD ID:6837322
Promoter ID:MM_KWN:44522
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000055012
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365138,362,626 - 138,363,126 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88610 AgrOrtholog
Ensembl Genes ENSMUSG00000029727 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000031741 ENTREZGENE
  ENSMUST00000031741.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.630.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_P450_E_CYP3A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_P450_E_grp-II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88610 ENTREZGENE
NCBI Gene 13113 ENTREZGENE
PANTHER CYTOCHROME P450 3A7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CYTOCHROME P450 FAMILY 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam p450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB CYP3A7 RGD
PhenoGen Cyp3a13 PhenoGen
PRINTS EP450II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EP450IICYP3A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CP3AD_MOUSE UniProtKB/Swiss-Prot
  Q3UW87 ENTREZGENE, UniProtKB/TrEMBL
  Q64464 ENTREZGENE