Cacng2 (calcium channel, voltage-dependent, gamma subunit 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cacng2 (calcium channel, voltage-dependent, gamma subunit 2) Mus musculus
Analyze
Symbol: Cacng2
Name: calcium channel, voltage-dependent, gamma subunit 2
RGD ID: 731677
MGI Page MGI
Description: Enables voltage-gated calcium channel activity. Involved in neurotransmitter receptor internalization; postsynaptic neurotransmitter receptor diffusion trapping; and protein localization to organelle. Acts upstream of or within several processes, including membrane hyperpolarization; neuromuscular junction development; and transmission of nerve impulse. Located in somatodendritic compartment. Part of AMPA glutamate receptor complex. Is active in several cellular components, including Schaffer collateral - CA1 synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density membrane. Is expressed in several structures, including brain; genitourinary system; ileum; spinal cord; and trigeminal nerve. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 10. Orthologous to human CACNG2 (calcium voltage-gated channel auxiliary subunit gamma 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW060990; B230105C07Rik; B930041E13Rik; MGC123981; neuronal voltage-gated calcium channel gamma-2 subunit; sta; stargazer; stargazin; stg; TARP gamma 2; TARP gamma-2; transmembrane AMPAR regulatory protein gamma-2; voltage-dependent calcium channel gamma-2 subunit; wag; waggler
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391577,876,119 - 78,004,420 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1577,875,948 - 78,004,228 (-)EnsemblGRCm39 Ensembl
GRCm381577,991,919 - 78,120,220 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,991,748 - 78,120,028 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,824,053 - 77,949,710 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,822,211 - 77,946,535 (-)NCBIMGSCv36mm8
Celera1579,452,871 - 79,580,282 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1536.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal AMPA-mediated synaptic currents  (IAGP)
abnormal brain wave pattern  (IAGP)
abnormal CNS synapse formation  (IAGP)
abnormal CNS synaptic transmission  (IAGP)
abnormal crista ampullaris morphology  (IAGP)
abnormal excitatory postsynaptic currents  (IAGP)
abnormal gait  (IAGP)
abnormal hippocampal mossy fiber morphology  (IAGP)
abnormal innervation  (IAGP)
abnormal locomotor coordination  (IAGP)
abnormal miniature excitatory postsynaptic currents  (IAGP)
abnormal motor neuron morphology  (IAGP)
abnormal neuromuscular synapse morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal Purkinje cell innervation  (IAGP)
abnormal synapse morphology  (IAGP)
abnormal synaptic vesicle morphology  (IAGP)
abnormal synaptic vesicle number  (IAGP)
abnormal thalamus morphology  (IAGP)
abnormal type I vestibular cell  (IAGP)
abnormal vestibular hair cell morphology  (IAGP)
absence of AMPA-mediated synaptic currents  (IAGP)
absence seizures  (IAGP)
ataxia  (IAGP)
circling  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased CNS synapse formation  (IAGP)
decreased excitatory postsynaptic current amplitude  (IAGP)
decreased miniature excitatory postsynaptic current amplitude  (IAGP)
decreased miniature excitatory postsynaptic current frequency  (IAGP)
decreased startle reflex  (IAGP)
decreased vertical activity  (IAGP)
head bobbing  (IAGP)
head shaking  (IAGP)
head tossing  (IAGP)
hyperactivity  (IAGP)
impaired coordination  (IAGP)
impaired righting response  (IAGP)
impaired swimming  (IAGP)
increased excitatory postsynaptic current amplitude  (IAGP)
increased miniature excitatory postsynaptic current amplitude  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
loss of hippocampal neurons  (IAGP)
male infertility  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
reduced AMPA-mediated synaptic currents  (IAGP)
short excitatory postsynaptic current decay time  (IAGP)
short excitatory postsynaptic current rise time  (IAGP)
stereotypic behavior  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Mechanisms of CaMKII action in long-term potentiation. Lisman J, etal., Nat Rev Neurosci. 2012 Feb 15;13(3):169-82. doi: 10.1038/nrn3192.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Genetic absence epilepsy rats from Strasbourg have increased corticothalamic expression of stargazin. Powell KL, etal., Neurobiol Dis. 2008 Aug;31(2):261-5. doi: 10.1016/j.nbd.2008.04.012. Epub 2008 May 10.
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1933329   PMID:2289471   PMID:8229188   PMID:8500431   PMID:8551348   PMID:8889548   PMID:9065835   PMID:9226373   PMID:9293489   PMID:9697694   PMID:9712667   PMID:9757064  
PMID:9801364   PMID:10349636   PMID:10395577   PMID:10407040   PMID:10446746   PMID:10454360   PMID:10469844   PMID:10515158   PMID:10515159   PMID:10518588   PMID:10643919   PMID:10670432  
PMID:11042159   PMID:11076861   PMID:11140673   PMID:11188726   PMID:11427320   PMID:11516827   PMID:11700294   PMID:11805122   PMID:12151514   PMID:12357434   PMID:12477932   PMID:12920207  
PMID:12925883   PMID:14610273   PMID:15136571   PMID:15175394   PMID:15175395   PMID:15283975   PMID:15562504   PMID:15630087   PMID:15664178   PMID:15677329   PMID:15689545   PMID:15758178  
PMID:15760900   PMID:15883194   PMID:15917267   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16602821   PMID:16870733   PMID:16914686   PMID:16985003   PMID:17070505   PMID:17320843  
PMID:17329203   PMID:17329211   PMID:17376992   PMID:17544459   PMID:17588548   PMID:17646167   PMID:17880893   PMID:17880894   PMID:17973978   PMID:18000041   PMID:18287559   PMID:18341993  
PMID:18634809   PMID:18753375   PMID:18799693   PMID:18923036   PMID:19146816   PMID:19208628   PMID:19422811   PMID:19549880   PMID:19805317   PMID:19942860   PMID:19966779   PMID:20185686  
PMID:20435886   PMID:20529126   PMID:20547132   PMID:20688780   PMID:20805473   PMID:21172611   PMID:21267068   PMID:21411637   PMID:21426941   PMID:21543622   PMID:21873635   PMID:22002768  
PMID:22055455   PMID:22239345   PMID:22347480   PMID:22581185   PMID:22609941   PMID:22632720   PMID:22875939   PMID:23354328   PMID:23719165   PMID:23872597   PMID:24065886   PMID:24194600  
PMID:24217640   PMID:24417662   PMID:24882000   PMID:25127140   PMID:25164819   PMID:25583485   PMID:25762667   PMID:25798587   PMID:25979088   PMID:26297893   PMID:27003116   PMID:27076426  
PMID:27507650   PMID:27717808   PMID:28238550   PMID:28559374   PMID:28671696   PMID:28706196   PMID:28871958   PMID:28919175   PMID:29099440   PMID:29311821   PMID:29769525   PMID:29925625  
PMID:31329447   PMID:31492534   PMID:32452760   PMID:32697982   PMID:32948689   PMID:34048799   PMID:34299369   PMID:34321999   PMID:35256745   PMID:35864088   PMID:35896608   PMID:36417873  
PMID:36555327   PMID:36604605   PMID:36671571   PMID:37491367   PMID:38187761  


Genomics

Comparative Map Data
Cacng2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391577,876,119 - 78,004,420 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1577,875,948 - 78,004,228 (-)EnsemblGRCm39 Ensembl
GRCm381577,991,919 - 78,120,220 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,991,748 - 78,120,028 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,824,053 - 77,949,710 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,822,211 - 77,946,535 (-)NCBIMGSCv36mm8
Celera1579,452,871 - 79,580,282 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1536.92NCBI
CACNG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,560,857 - 36,703,752 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,560,857 - 36,703,752 (-)EnsemblGRCh38hg38GRCh38
GRCh372236,956,904 - 37,099,797 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,290,050 - 35,428,849 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,284,603 - 35,423,403NCBI
Celera2220,762,236 - 20,901,711 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,924,851 - 20,065,866 (-)NCBIHuRef
CHM1_12236,915,848 - 37,057,863 (-)NCBICHM1_1
T2T-CHM13v2.02237,021,025 - 37,164,438 (-)NCBIT2T-CHM13v2.0
Cacng2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,451,605 - 111,579,071 (-)NCBIGRCr8
mRatBN7.27109,572,838 - 109,698,516 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,574,459 - 109,697,227 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,324,291 - 111,447,205 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,547,853 - 113,670,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,515,808 - 113,638,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,228,112 - 119,353,332 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,228,102 - 119,352,605 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,221,311 - 119,344,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47115,913,440 - 116,037,891 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17115,947,669 - 116,072,121 (-)NCBI
Celera7105,915,114 - 106,037,137 (-)NCBICelera
Cytogenetic Map7q34NCBI
Cacng2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,132,896 - 23,248,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,136,369 - 23,248,231 (-)NCBIChiLan1.0ChiLan1.0
CACNG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,415,282 - 46,557,237 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,106,496 - 49,247,988 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,475,693 - 17,618,299 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,313,679 - 35,454,844 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,317,121 - 35,454,850 (-)Ensemblpanpan1.1panPan2
CACNG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,750,314 - 27,862,646 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,750,935 - 27,862,885 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,704,742 - 27,816,319 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,542,976 - 28,647,844 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,543,246 - 28,649,561 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,264,819 - 28,376,310 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,572,787 - 28,684,331 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,751,224 - 28,862,860 (+)NCBIUU_Cfam_GSD_1.0
Cacng2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,115,362 - 11,221,857 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,125,173 - 4,236,062 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,125,182 - 4,232,239 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl511,067,692 - 11,185,480 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1511,067,016 - 11,185,480 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,846,099 - 8,866,357 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,263,950 - 19,406,952 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,267,426 - 19,406,883 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,459,860 - 106,604,857 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475211,062,002 - 11,170,406 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475211,062,059 - 11,172,357 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacng2
4184 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1485
Count of miRNA genes:666
Interacting mature miRNAs:808
Transcripts:ENSMUST00000019290
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse

Markers in Region
AW060990  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,992,059 - 77,992,150UniSTSGRCm38
MGSCv371577,822,489 - 77,822,580UniSTSGRCm37
Celera1579,451,307 - 79,451,398UniSTS
Cytogenetic Map15E1UniSTS
cM Map1545.2UniSTS
Whitehead/MRC_RH15699.05UniSTS
AF077739  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381577,995,033 - 77,995,155UniSTSGRCm38
MGSCv371577,825,463 - 77,825,585UniSTSGRCm37
Celera1579,454,282 - 79,454,404UniSTS
Cytogenetic Map15E1UniSTS
cM Map1545.2UniSTS
Whitehead/MRC_RH15705.01UniSTS
Cacng2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E1UniSTS
cM Map1545.2UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000019290   ⟹   ENSMUSP00000019290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1577,875,948 - 78,004,228 (-)Ensembl
GRCm38.p6 Ensembl1577,991,748 - 78,120,028 (-)Ensembl
RefSeq Acc Id: NM_007583   ⟹   NP_031609
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391577,877,823 - 78,003,480 (-)NCBI
GRCm381577,993,623 - 78,119,280 (-)NCBI
MGSCv371577,824,053 - 77,949,710 (-)RGD
Celera1579,452,871 - 79,580,282 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520371   ⟹   XP_006520434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391577,876,119 - 78,004,420 (-)NCBI
GRCm381577,991,919 - 78,120,220 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031609   ⟸   NM_007583
- UniProtKB: O88602 (UniProtKB/Swiss-Prot),   Q3ZB20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520434   ⟸   XM_006520371
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000019290   ⟸   ENSMUST00000019290

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88602-F1-model_v2 AlphaFold O88602 1-323 view protein structure

Promoters
RGD ID:6825968
Promoter ID:MM_KWN:18963
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000069587,   UC007WOO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361577,822,636 - 77,823,136 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1316660 AgrOrtholog
Ensembl Genes ENSMUSG00000019146 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000019290 ENTREZGENE
  ENSMUST00000019290.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.140.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_g2su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1316660 ENTREZGENE
NCBI Gene 12300 ENTREZGENE
PANTHER PTHR12107:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cacng2 PhenoGen
PRINTS VDCCGAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCCGAMMA2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CCG2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3ZB20 ENTREZGENE, UniProtKB/TrEMBL
  Q8C8F5_MOUSE UniProtKB/TrEMBL