Utrn (utrophin) - Rat Genome Database

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Gene: Utrn (utrophin) Mus musculus
Analyze
Symbol: Utrn
Name: utrophin
RGD ID: 731342
MGI Page MGI
Description: Predicted to enable cytoskeletal protein binding activity; integrin binding activity; and protein kinase binding activity. Predicted to be involved in positive regulation of cell-matrix adhesion and synaptic signaling. Predicted to act upstream of or within adult somatic muscle development. Located in neuromuscular junction and sarcolemma. Part of dystrophin-associated glycoprotein complex. Is expressed in several structures, including alimentary system; central nervous system; digit mesenchyme; genitourinary system; and nasal epithelium. Used to study Duchenne muscular dystrophy. Orthologous to human UTRN (utrophin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA589569; D; Dmd; Dmdl; DRP; G-utr; G-utrophin; utrophin short isoform, Up109
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391012,257,931 - 12,745,632 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1012,257,932 - 12,745,109 (-)EnsemblGRCm39 Ensembl
GRCm381012,382,187 - 12,869,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1012,382,188 - 12,869,365 (-)EnsemblGRCm38mm10GRCm38
MGSCv371012,101,986 - 12,581,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361012,073,568 - 12,551,836 (-)NCBIMGSCv36mm8
Celera1012,282,524 - 12,766,578 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
apigenin  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
chromium(6+)  (EXP,ISO)
chrysene  (EXP)
chrysin  (ISO)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP)
clorgyline  (ISO)
clothianidin  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (EXP)
dicrotophos  (ISO)
dorsomorphin  (ISO)
equilin  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenamidone  (EXP)
fenvalerate  (ISO)
folic acid  (EXP)
furan  (ISO)
gallic acid  (ISO)
glyphosate  (ISO)
hesperetin  (ISO)
ivermectin  (ISO)
kaempferol  (ISO)
leflunomide  (ISO)
Mesaconitine  (ISO)
methamphetamine  (EXP)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylseleninic acid  (ISO)
mitoxantrone  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nabumetone  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
phenazopyridine  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
piperine  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quinolin-8-ol  (ISO)
resveratrol  (EXP,ISO)
Riluzole  (ISO)
SB 431542  (ISO)
sodium dichromate  (ISO)
succimer  (ISO)
tetraphene  (EXP)
thiabendazole  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
trovafloxacin  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Utrophin-dystrophin-deficient mice as a model for Duchenne muscular dystrophy. Deconinck AE, etal., Cell 1997 Aug 22;90(4):717-27.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Proteomics success story. Towards early detection of breast and ovarian cancer: plasma proteomics as a tool to find novel markers. Souchelnytskyi S, etal., Proteomics. 2006 Sep;6 Suppl 2:65-8.
Additional References at PubMed
PMID:1461282   PMID:2014247   PMID:2203673   PMID:2541343   PMID:7731967   PMID:7738095   PMID:7890770   PMID:7962191   PMID:7987307   PMID:8021701   PMID:8046773   PMID:8130373  
PMID:8159184   PMID:8171962   PMID:8186702   PMID:8268660   PMID:8433092   PMID:8568939   PMID:8589441   PMID:8649981   PMID:8653788   PMID:8812454   PMID:8977119   PMID:9049252  
PMID:9049253   PMID:9079621   PMID:9245586   PMID:9288752   PMID:9297964   PMID:9422725   PMID:9499411   PMID:9590295   PMID:9625743   PMID:9674605   PMID:9713852   PMID:10072426  
PMID:10189375   PMID:10204788   PMID:10349636   PMID:10369873   PMID:10525423   PMID:10559919   PMID:10570192   PMID:10652301   PMID:10679963   PMID:10694796   PMID:10719885   PMID:10814717  
PMID:10922068   PMID:10995443   PMID:11042159   PMID:11076861   PMID:11257121   PMID:11297940   PMID:11312300   PMID:11369940   PMID:11544199   PMID:11551978   PMID:11595512   PMID:11726694  
PMID:11801396   PMID:11802174   PMID:11875058   PMID:12005030   PMID:12006649   PMID:12028357   PMID:12046625   PMID:12225973   PMID:12235137   PMID:12387876   PMID:12403715   PMID:12477932  
PMID:12520002   PMID:12532267   PMID:12633873   PMID:12702645   PMID:12808150   PMID:12832540   PMID:12868498   PMID:12904583   PMID:14610273   PMID:14681302   PMID:14691545   PMID:15365169  
PMID:15371519   PMID:15501597   PMID:15565469   PMID:15632017   PMID:15698839   PMID:15703201   PMID:15826935   PMID:15930144   PMID:15963030   PMID:16024571   PMID:16061482   PMID:16141072  
PMID:16141073   PMID:16307000   PMID:16407563   PMID:16457992   PMID:16478721   PMID:16487708   PMID:16525850   PMID:16710609   PMID:16777071   PMID:16819550   PMID:16857187   PMID:17030984  
PMID:17119023   PMID:17300937   PMID:17389230   PMID:17475492   PMID:17692845   PMID:17889902   PMID:17967782   PMID:17967808   PMID:18083704   PMID:18180614   PMID:18338831   PMID:18343112  
PMID:18458097   PMID:18468998   PMID:18586242   PMID:18665159   PMID:18799693   PMID:18945675   PMID:18973234   PMID:18986978   PMID:19179609   PMID:19321787   PMID:19409875   PMID:19442736  
PMID:19486009   PMID:19509342   PMID:19651889   PMID:19729483   PMID:19945424   PMID:20130206   PMID:20483958   PMID:20656885   PMID:20705734   PMID:20720107   PMID:20952415   PMID:21062902  
PMID:21187970   PMID:21198641   PMID:21216283   PMID:21267068   PMID:21289070   PMID:21565990   PMID:21677768   PMID:21768337   PMID:21768542   PMID:21873635   PMID:21949353   PMID:22003386  
PMID:22028625   PMID:22102469   PMID:22180459   PMID:22209498   PMID:22216264   PMID:22266080   PMID:22284942   PMID:22388933   PMID:22427904   PMID:22493004   PMID:22495301   PMID:22734004  
PMID:22764250   PMID:22798625   PMID:22966155   PMID:23009292   PMID:23097179   PMID:23185009   PMID:23363418   PMID:23460734   PMID:24068741   PMID:24337461   PMID:24449818   PMID:24466085  
PMID:24706788   PMID:24781208   PMID:24879867   PMID:25082828   PMID:25298424   PMID:25324540   PMID:25504048   PMID:25607927   PMID:25642938   PMID:25652448   PMID:25678553   PMID:25859011  
PMID:25859846   PMID:25865621   PMID:25921779   PMID:25935002   PMID:25940966   PMID:25941878   PMID:26230628   PMID:26429098   PMID:26483274   PMID:26974331   PMID:27037492   PMID:27110493  
PMID:27560040   PMID:27679742   PMID:27750047   PMID:27798095   PMID:27798264   PMID:27822449   PMID:27836895   PMID:27854211   PMID:27881412   PMID:28334037   PMID:28432191   PMID:28453658  
PMID:28785010   PMID:28790199   PMID:29045431   PMID:29051551   PMID:29065908   PMID:29187535   PMID:29408646   PMID:29744875   PMID:29772070   PMID:29879154   PMID:30672725   PMID:30689868  
PMID:30914715   PMID:31039133   PMID:31506484   PMID:31591596   PMID:31754018   PMID:32025735   PMID:32192914   PMID:33359740   PMID:33361519   PMID:33497702   PMID:33651713   PMID:33987645  
PMID:34155298   PMID:34321999   PMID:34389686   PMID:34716330   PMID:35298089   PMID:35449600   PMID:35557546   PMID:35790299   PMID:35859073   PMID:36099033   PMID:36114006   PMID:36966198  
PMID:37108685   PMID:37839992  


Genomics

Comparative Map Data
Utrn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391012,257,931 - 12,745,632 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1012,257,932 - 12,745,109 (-)EnsemblGRCm39 Ensembl
GRCm381012,382,187 - 12,869,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1012,382,188 - 12,869,365 (-)EnsemblGRCm38mm10GRCm38
MGSCv371012,101,986 - 12,581,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361012,073,568 - 12,551,836 (-)NCBIMGSCv36mm8
Celera1012,282,524 - 12,766,578 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.77NCBI
UTRN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386144,285,335 - 144,853,034 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6144,285,335 - 144,853,034 (+)EnsemblGRCh38hg38GRCh38
GRCh376144,606,471 - 145,174,170 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366144,654,566 - 145,215,863 (+)NCBINCBI36Build 36hg18NCBI36
Build 346144,654,657 - 145,209,657NCBI
Celera6145,353,235 - 145,914,469 (+)NCBICelera
Cytogenetic Map6q24.2NCBI
HuRef6142,176,382 - 142,737,622 (+)NCBIHuRef
CHM1_16144,875,601 - 145,437,493 (+)NCBICHM1_1
T2T-CHM13v2.06145,477,963 - 146,045,651 (+)NCBIT2T-CHM13v2.0
Utrn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818,541,061 - 9,044,487 (-)NCBIGRCr8
mRatBN7.216,720,854 - 7,224,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl16,722,594 - 7,224,313 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx16,424,644 - 6,925,694 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0112,423,666 - 12,924,754 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.016,706,883 - 7,207,935 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.016,451,809 - 6,970,040 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl16,451,810 - 6,970,040 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018,097,013 - 8,608,996 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.417,099,840 - 7,614,980 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.117,099,839 - 7,614,980 (-)NCBI
Celera15,228,645 - 5,725,909 (-)NCBICelera
RH 3.4 Map1104.42RGD
Cytogenetic Map1p13NCBI
Utrn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543615,730,020 - 16,231,919 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543615,730,416 - 16,237,379 (-)NCBIChiLan1.0ChiLan1.0
UTRN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25164,274,877 - 164,842,973 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16162,169,685 - 162,737,303 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06142,069,139 - 142,636,507 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16146,786,654 - 147,353,226 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6146,793,153 - 147,351,210 (+)Ensemblpanpan1.1panPan2
UTRN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1135,727,531 - 36,225,533 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl135,677,814 - 36,224,065 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha136,627,086 - 37,115,507 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0135,906,556 - 36,401,715 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl135,845,084 - 36,401,052 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1135,775,436 - 36,264,006 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0135,651,671 - 36,139,451 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0135,969,567 - 36,458,179 (+)NCBIUU_Cfam_GSD_1.0
Utrn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946130,636,043 - 131,145,229 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366251,489,696 - 1,894,813 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366251,490,327 - 1,999,428 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UTRN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl120,514,260 - 21,048,484 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1120,514,264 - 21,047,927 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2122,999,397 - 23,103,391 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UTRN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11328,354,810 - 28,949,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1328,354,588 - 28,944,119 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040564,242 - 1,085,338 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Utrn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247539,554,240 - 9,984,058 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247539,548,914 - 10,090,635 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Utrn
17774 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:572
Count of miRNA genes:392
Interacting mature miRNAs:457
Transcripts:ENSMUST00000076817
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1301796Mop2_mmorphine preference 2 (mouse)Not determined10928911929028424Mouse
1300759Geot_mgeotaxia (mouse)Not determined10126289265Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300881Sluc29_msusceptibility to lung cancer 29 (mouse)Not determined10126289265Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
11532723Sluc44d_msusceptibility to lung cancer 44d (mouse)10126289265Mouse
11532722Sluc44e_msusceptibility to lung cancer 44e (mouse)10126289265Mouse
11532725Sluc44b_msusceptibility to lung cancer 44b (mouse)10126289265Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
11532721Sluc44_msusceptibility to lung cancer 44 (mouse)10126289265Mouse
11532720Sluc44a_msusceptibility to lung cancer 44a (mouse)10126289265Mouse
11533917Mts2_mmammary tumor susceptibility 2 (mouse)10126289265Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
11532724Sluc44c_msusceptibility to lung cancer 44c (mouse)10126289265Mouse
11532718Sluc44f_msusceptibility to lung cancer 44f (mouse)10126289265Mouse
11532717Sluc44g_msusceptibility to lung cancer 44g (mouse)10126289265Mouse

Markers in Region
D10Mit1.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381012,828,191 - 12,828,302UniSTSGRCm38
MGSCv371012,547,989 - 12,548,100UniSTSGRCm37
Celera1012,732,063 - 12,732,174UniSTS
Cytogenetic Map10A1UniSTS
cM Map106.0UniSTS
cM Map10 UniSTS
Whitehead Genetic103.3UniSTS
D10Mit246  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381012,821,978 - 12,822,176UniSTSGRCm38
MGSCv371012,541,776 - 12,541,974UniSTSGRCm37
Celera1012,725,865 - 12,726,051UniSTS
Cytogenetic Map10A1UniSTS
cM Map105.0UniSTS
Whitehead Genetic103.3UniSTS
Y12229  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381012,383,473 - 12,383,566UniSTSGRCm38
MGSCv371012,103,271 - 12,103,364UniSTSGRCm37
Celera1012,283,809 - 12,283,902UniSTS
Cytogenetic Map10A1UniSTS
cM Map103.0UniSTS
Whitehead/MRC_RH10152.21UniSTS
RH125005  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381012,382,864 - 12,383,128UniSTSGRCm38
MGSCv371012,102,662 - 12,102,926UniSTSGRCm37
Celera1012,283,200 - 12,283,464UniSTS
Cytogenetic Map10A1UniSTS
cM Map103.0UniSTS
Utrn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10A1UniSTS
cM Map103.0UniSTS
AU049853  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381012,790,349 - 12,790,588UniSTSGRCm38
MGSCv371012,510,147 - 12,510,386UniSTSGRCm37
Celera1012,693,144 - 12,693,384UniSTS
Cytogenetic Map10A1UniSTS
cM Map103.0UniSTS
D10Mit1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381012,828,307 - 12,828,408UniSTSGRCm38
MGSCv371012,548,105 - 12,548,206UniSTSGRCm37
Celera1012,732,179 - 12,732,280UniSTS
Cytogenetic Map10A1UniSTS
cM Map106.0UniSTS
Whitehead Genetic103.3UniSTS
Whitehead/MRC_RH10159.89UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ250045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ278913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ315977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF162859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN696562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH671354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH671355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH671356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH671357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X83506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y12229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000076817   ⟹   ENSMUSP00000076093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,257,932 - 12,737,479 (-)Ensembl
GRCm38.p6 Ensembl1012,382,188 - 12,861,735 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217899   ⟹   ENSMUSP00000151938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,596,578 - 12,689,359 (-)Ensembl
GRCm38.p6 Ensembl1012,720,834 - 12,813,615 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,276,810 - 12,278,819 (-)Ensembl
GRCm38.p6 Ensembl1012,401,066 - 12,403,075 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217994   ⟹   ENSMUSP00000151592
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,259,932 - 12,490,575 (-)Ensembl
GRCm38.p6 Ensembl1012,384,188 - 12,614,831 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218635   ⟹   ENSMUSP00000151431
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,259,124 - 12,745,109 (-)Ensembl
GRCm38.p6 Ensembl1012,383,380 - 12,869,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219003   ⟹   ENSMUSP00000151628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,257,934 - 12,424,623 (-)Ensembl
GRCm38.p6 Ensembl1012,382,190 - 12,548,879 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219130   ⟹   ENSMUSP00000151274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,623,668 - 12,702,682 (-)Ensembl
GRCm38.p6 Ensembl1012,747,924 - 12,826,938 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,737,107 - 12,743,923 (-)Ensembl
GRCm38.p6 Ensembl1012,861,363 - 12,868,179 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,688,155 - 12,689,293 (-)Ensembl
GRCm38.p6 Ensembl1012,812,411 - 12,813,549 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219163   ⟹   ENSMUSP00000151259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,623,671 - 12,689,318 (-)Ensembl
GRCm38.p6 Ensembl1012,747,927 - 12,813,574 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219584   ⟹   ENSMUSP00000152040
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,596,569 - 12,743,915 (-)Ensembl
GRCm38.p6 Ensembl1012,720,825 - 12,868,171 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219660   ⟹   ENSMUSP00000151359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,596,569 - 12,744,025 (-)Ensembl
GRCm38.p6 Ensembl1012,720,825 - 12,868,281 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1012,542,167 - 12,564,606 (-)Ensembl
GRCm38.p6 Ensembl1012,666,423 - 12,688,862 (-)Ensembl
RefSeq Acc Id: NM_011682   ⟹   NP_035812
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,932 - 12,737,479 (-)NCBI
GRCm381012,382,188 - 12,861,735 (-)NCBI
MGSCv371012,101,986 - 12,581,533 (-)RGD
Celera1012,282,524 - 12,766,578 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512706   ⟹   XP_006512769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,689,383 (-)NCBI
GRCm381012,382,187 - 12,813,755 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512707   ⟹   XP_006512770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,744,397 (-)NCBI
GRCm381012,382,196 - 12,868,640 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512708   ⟹   XP_006512771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,745,632 (-)NCBI
GRCm381012,382,196 - 12,869,888 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512709   ⟹   XP_006512772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,744,059 (-)NCBI
GRCm381012,382,187 - 12,868,317 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512710   ⟹   XP_006512773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,744,854 (-)NCBI
GRCm381012,382,187 - 12,869,888 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512711   ⟹   XP_006512774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,703,106 (-)NCBI
GRCm381012,382,187 - 12,827,219 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512712   ⟹   XP_006512775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,689,359 (-)NCBI
GRCm381012,382,187 - 12,813,598 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512713   ⟹   XP_006512776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,689,318 (-)NCBI
GRCm381012,382,187 - 12,813,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512715   ⟹   XP_006512778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,496,889 (-)NCBI
GRCm381012,382,187 - 12,620,143 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512717   ⟹   XP_006512780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,424,418 (-)NCBI
GRCm381012,382,187 - 12,548,674 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243167   ⟹   XP_011241469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,745,632 (-)NCBI
GRCm381012,382,187 - 12,869,888 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313925   ⟹   XP_017169414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,424,681 (-)NCBI
GRCm381012,382,187 - 12,548,937 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245067   ⟹   XP_030100927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,744,058 (-)NCBI
GRCm381012,382,187 - 12,868,317 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245068   ⟹   XP_030100928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391012,257,931 - 12,488,391 (-)NCBI
GRCm381012,382,187 - 12,612,647 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_035812 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512769 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512770 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512771 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512772 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512773 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512774 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512775 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512776 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512778 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512780 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241469 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169414 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100927 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100928 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH50183 (Get FASTA)   NCBI Sequence Viewer  
  AAH62163 (Get FASTA)   NCBI Sequence Viewer  
  BAB32239 (Get FASTA)   NCBI Sequence Viewer  
  BAC33835 (Get FASTA)   NCBI Sequence Viewer  
  BAE22138 (Get FASTA)   NCBI Sequence Viewer  
  BAE37171 (Get FASTA)   NCBI Sequence Viewer  
  CAA58496 (Get FASTA)   NCBI Sequence Viewer  
  CAA72912 (Get FASTA)   NCBI Sequence Viewer  
  CAB61829 (Get FASTA)   NCBI Sequence Viewer  
  CAC67409 (Get FASTA)   NCBI Sequence Viewer  
  CAC87084 (Get FASTA)   NCBI Sequence Viewer  
  EDL03513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000076093
  ENSMUSP00000076093.5
  ENSMUSP00000151259.2
  ENSMUSP00000151274.2
  ENSMUSP00000151359.2
  ENSMUSP00000151431
  ENSMUSP00000151431.2
  ENSMUSP00000151592
  ENSMUSP00000151592.2
  ENSMUSP00000151628
  ENSMUSP00000151628.2
  ENSMUSP00000151938.2
  ENSMUSP00000152040.2
RefSeq Acc Id: NP_035812   ⟸   NM_011682
- UniProtKB: E9Q6R7 (UniProtKB/TrEMBL),   O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512771   ⟸   XM_006512708
- Peptide Label: isoform X2
- UniProtKB: E9Q6R7 (UniProtKB/TrEMBL),   O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512773   ⟸   XM_006512710
- Peptide Label: isoform X2
- UniProtKB: E9Q6R7 (UniProtKB/TrEMBL),   O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512772   ⟸   XM_006512709
- Peptide Label: isoform X2
- UniProtKB: E9Q6R7 (UniProtKB/TrEMBL),   O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512770   ⟸   XM_006512707
- Peptide Label: isoform X2
- UniProtKB: E9Q6R7 (UniProtKB/TrEMBL),   O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512774   ⟸   XM_006512711
- Peptide Label: isoform X3
- UniProtKB: O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512775   ⟸   XM_006512712
- Peptide Label: isoform X4
- UniProtKB: O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512769   ⟸   XM_006512706
- Peptide Label: isoform X1
- UniProtKB: O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512776   ⟸   XM_006512713
- Peptide Label: isoform X5
- UniProtKB: O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512778   ⟸   XM_006512715
- Peptide Label: isoform X6
- UniProtKB: Q61636 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512780   ⟸   XM_006512717
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011241469   ⟸   XM_011243167
- Peptide Label: isoform X5
- UniProtKB: O08614 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169414   ⟸   XM_017313925
- Peptide Label: isoform X7
- UniProtKB: A0A1W2P7C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030100927   ⟸   XM_030245067
- Peptide Label: isoform X5
- UniProtKB: O08614 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030100928   ⟸   XM_030245068
- Peptide Label: isoform X9
RefSeq Acc Id: ENSMUSP00000151431   ⟸   ENSMUST00000218635
RefSeq Acc Id: ENSMUSP00000151938   ⟸   ENSMUST00000217899
RefSeq Acc Id: ENSMUSP00000151592   ⟸   ENSMUST00000217994
RefSeq Acc Id: ENSMUSP00000151274   ⟸   ENSMUST00000219130
RefSeq Acc Id: ENSMUSP00000151259   ⟸   ENSMUST00000219163
RefSeq Acc Id: ENSMUSP00000151628   ⟸   ENSMUST00000219003
RefSeq Acc Id: ENSMUSP00000151359   ⟸   ENSMUST00000219660
RefSeq Acc Id: ENSMUSP00000152040   ⟸   ENSMUST00000219584
RefSeq Acc Id: ENSMUSP00000076093   ⟸   ENSMUST00000076817
Protein Domains
Calponin-homology (CH)   WW   ZZ-type

Promoters
RGD ID:6820083
Promoter ID:MM_KWN:3548
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000064997,   UC007EJX.1,   UC007EJY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361012,334,486 - 12,334,986 (-)MPROMDB
RGD ID:6818870
Promoter ID:MM_KWN:3550
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Lung,   Spleen
Transcripts:ENSMUST00000105549,   UC007EKA.1,   UC007EKB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361012,532,949 - 12,533,449 (-)MPROMDB
RGD ID:6846797
Promoter ID:MM_ACW:3956
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day6
Transcripts:UTRN.JSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361012,546,901 - 12,547,401 (-)MPROMDB
RGD ID:6820086
Promoter ID:MM_KWN:3552
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC007EKC.1,   UC007EKD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361012,587,876 - 12,588,417 (-)MPROMDB
RGD ID:6820089
Promoter ID:MM_KWN:3553
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:UC007EKE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361012,588,761 - 12,589,507 (-)MPROMDB
RGD ID:8671494
Promoter ID:EPDNEW_M13778
Type:initiation region
Name:Utrn_1
Description:Mus musculus utrophin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13779  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381012,868,219 - 12,868,279EPDNEW
RGD ID:8671496
Promoter ID:EPDNEW_M13779
Type:initiation region
Name:Utrn_2
Description:Mus musculus utrophin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13778  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381012,869,165 - 12,869,225EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104631 AgrOrtholog
Ensembl Genes ENSMUSG00000019820 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076817 ENTREZGENE
  ENSMUST00000076817.5 UniProtKB/TrEMBL
  ENSMUST00000217899.2 UniProtKB/TrEMBL
  ENSMUST00000217994 ENTREZGENE
  ENSMUST00000217994.2 UniProtKB/TrEMBL
  ENSMUST00000218635 ENTREZGENE
  ENSMUST00000218635.2 UniProtKB/TrEMBL
  ENSMUST00000219003 ENTREZGENE
  ENSMUST00000219003.2 UniProtKB/TrEMBL
  ENSMUST00000219130.2 UniProtKB/TrEMBL
  ENSMUST00000219163.2 UniProtKB/TrEMBL
  ENSMUST00000219584.2 UniProtKB/TrEMBL
  ENSMUST00000219660.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/TrEMBL
  2.20.70.10 UniProtKB/TrEMBL
  3.30.60.90 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/TrEMBL
  Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  Dystrophin/utrophin UniProtKB/TrEMBL
  EF-hand-like_dom UniProtKB/TrEMBL
  EF-hand_dom_typ1 UniProtKB/TrEMBL
  EF-hand_dom_typ2 UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
  WW_Rsp5_WWP UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/TrEMBL
KEGG Report mmu:22288 UniProtKB/TrEMBL
MGD MGI:104631 ENTREZGENE
NCBI Gene 22288 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE KCMF1 UniProtKB/TrEMBL
  UTROPHIN UniProtKB/TrEMBL
Pfam efhand_1 UniProtKB/TrEMBL
  efhand_2 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
  PF00569 UniProtKB/TrEMBL
  Spectrin UniProtKB/TrEMBL
PhenoGen Utrn PhenoGen
PIRSF Dystrophin/utrophin UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
  ZF_ZZ_1 UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/TrEMBL
SMART SM00033 UniProtKB/TrEMBL
  SM00456 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
  ZnF_ZZ UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  Spectrin repeat UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  WW_Rsp5_WWP UniProtKB/TrEMBL
UniProt A0A1W2P6H3_MOUSE UniProtKB/TrEMBL
  A0A1W2P6L4_MOUSE UniProtKB/TrEMBL
  A0A1W2P7C0 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2P8A5_MOUSE UniProtKB/TrEMBL
  A0A1W2P8G5_MOUSE UniProtKB/TrEMBL
  E9Q6R7 ENTREZGENE, UniProtKB/TrEMBL
  O08614 ENTREZGENE, UniProtKB/TrEMBL
  Q3TR59_MOUSE UniProtKB/TrEMBL
  Q3UYS4_MOUSE UniProtKB/TrEMBL
  Q61636 ENTREZGENE, UniProtKB/TrEMBL
  Q6P6L2_MOUSE UniProtKB/TrEMBL
  Q810I5_MOUSE UniProtKB/TrEMBL
  Q811C1_MOUSE UniProtKB/TrEMBL