SLC30A1 (solute carrier family 30 member 1) - Rat Genome Database

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Gene: SLC30A1 (solute carrier family 30 member 1) Homo sapiens
Analyze
Symbol: SLC30A1
Name: solute carrier family 30 member 1
RGD ID: 731339
HGNC Page HGNC:11012
Description: Predicted to enable calcium channel inhibitor activity; zinc ion transmembrane transporter activity; and zinc:proton antiporter activity. Involved in defense response to bacterium and zinc ion import into organelle. Located in several cellular components, including Golgi apparatus; basolateral plasma membrane; and nuclear membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: proton-coupled zinc antiporter SLC30A1; solute carrier family 30 (zinc transporter), member 1; zinc resistance conferring homolog; zinc transporter 1; znT-1; ZNT1; ZRC1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381211,571,568 - 211,579,161 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1211,571,568 - 211,579,161 (-)EnsemblGRCh38hg38GRCh38
GRCh371211,744,910 - 211,752,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361209,815,004 - 209,818,722 (-)NCBINCBI36Build 36hg18NCBI36
Build 341208,136,777 - 208,140,494NCBI
Celera1184,975,478 - 184,979,196 (-)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1182,425,777 - 182,429,495 (-)NCBIHuRef
CHM1_11213,020,769 - 213,024,487 (-)NCBICHM1_1
T2T-CHM13v2.01210,817,650 - 210,825,243 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (EXP)
(-)-epigallocatechin 3-gallate  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-(5-isoquinolinesulfonyl)-2-methylpiperazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methoxyethanol  (ISO)
5-(2-methylpiperazine-1-sulfonyl)isoquinoline  (ISO)
5-aza-2'-deoxycytidine  (EXP)
acetamide  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (ISO)
aldosterone  (ISO)
all-trans-retinoic acid  (EXP)
all-trans-retinol  (ISO)
AM-251  (EXP)
amiodarone  (EXP)
ammonium chloride  (ISO)
antimycin A  (EXP)
arsenite(3-)  (EXP,ISO)
arsenous acid  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
calcitriol  (EXP,ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (EXP,ISO)
CGP 52608  (EXP)
chrysene  (ISO)
cisplatin  (EXP)
cobalt dichloride  (EXP,ISO)
colforsin daropate hydrochloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (EXP)
copper(II) sulfate  (EXP)
coumestrol  (EXP)
CU-O LINKAGE  (EXP)
curcumin  (EXP)
D-glucose  (ISO)
D-penicillamine  (ISO)
deguelin  (EXP)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (EXP)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
dicoumarol  (ISO)
dicrotophos  (EXP)
disulfiram  (EXP)
diuron  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
elesclomol  (EXP)
endosulfan  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (EXP)
flurotyl  (ISO)
formaldehyde  (EXP)
FR900359  (EXP)
genistein  (EXP)
genistein 7-O-beta-D-glucoside  (EXP)
gentamycin  (ISO)
glucose  (ISO)
irinotecan  (EXP)
isotretinoin  (EXP)
ivermectin  (EXP)
lead diacetate  (ISO)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury dibromide  (EXP)
mercury dichloride  (ISO)
mercury(0)  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
motexafin gadolinium  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP,ISO)
N-acetyl-L-cysteine  (EXP)
nefazodone  (ISO)
nickel dichloride  (ISO)
nitroprusside  (EXP)
ochratoxin A  (EXP)
oxaliplatin  (ISO)
p-chloromercuribenzoic acid  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentetic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (EXP)
phorone  (ISO)
picoxystrobin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (EXP)
propanal  (EXP)
protein kinase inhibitor  (EXP)
quercetin  (EXP)
quinolin-8-ol  (EXP)
rotenone  (EXP,ISO)
SB 431542  (EXP)
silicon dioxide  (ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
silver(1+) nitrate  (EXP)
sodium arsenite  (EXP)
spironolactone  (ISO)
staurosporine  (ISO)
sulfasalazine  (ISO)
sulindac  (EXP)
sunitinib  (EXP)
testosterone  (ISO)
tetraphene  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichostatin A  (EXP)
triptonide  (ISO)
valproic acid  (EXP)
vinclozolin  (ISO)
vorinostat  (EXP)
zidovudine  (EXP)
zinc acetate  (EXP)
zinc atom  (EXP,ISO)
zinc dichloride  (EXP,ISO)
zinc oxide  (EXP,ISO)
zinc sulfate  (EXP,ISO)
zinc(0)  (EXP,ISO)
ziram  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7506601   PMID:12477932   PMID:14662799   PMID:15276077   PMID:15451416   PMID:16179263   PMID:17349999   PMID:17786585   PMID:17971132   PMID:17971500   PMID:18029348   PMID:18158319  
PMID:18639746   PMID:18676680   PMID:19170196   PMID:19371353   PMID:19625176   PMID:19692168   PMID:19767393   PMID:19900532   PMID:20201890   PMID:20471814   PMID:21053094   PMID:21103883  
PMID:21347282   PMID:21462106   PMID:21873635   PMID:22349685   PMID:22572848   PMID:22939629   PMID:23839533   PMID:24488210   PMID:24951051   PMID:25468996   PMID:25657003   PMID:26186194  
PMID:26496610   PMID:26514267   PMID:26638075   PMID:26824222   PMID:27661418   PMID:27880917   PMID:28514442   PMID:28515276   PMID:29180619   PMID:29568061   PMID:30194290   PMID:30442766  
PMID:30639242   PMID:31364107   PMID:31471319   PMID:31871319   PMID:31995728   PMID:32344865   PMID:32441444   PMID:33001583   PMID:33022573   PMID:33140261   PMID:33397691   PMID:33631610  
PMID:33845483   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34672954   PMID:35271311   PMID:35384245   PMID:35563538   PMID:35696571   PMID:35844135   PMID:35944360   PMID:36204728  
PMID:36215168   PMID:37704626   PMID:37709865   PMID:37774976   PMID:38103516   PMID:38117590  


Genomics

Comparative Map Data
SLC30A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381211,571,568 - 211,579,161 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1211,571,568 - 211,579,161 (-)EnsemblGRCh38hg38GRCh38
GRCh371211,744,910 - 211,752,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361209,815,004 - 209,818,722 (-)NCBINCBI36Build 36hg18NCBI36
Build 341208,136,777 - 208,140,494NCBI
Celera1184,975,478 - 184,979,196 (-)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1182,425,777 - 182,429,495 (-)NCBIHuRef
CHM1_11213,020,769 - 213,024,487 (-)NCBICHM1_1
T2T-CHM13v2.01210,817,650 - 210,825,243 (-)NCBIT2T-CHM13v2.0
Slc30a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,638,810 - 191,645,359 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,638,879 - 191,645,359 (+)EnsemblGRCm39 Ensembl
GRCm381191,906,697 - 191,913,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,906,767 - 191,913,247 (+)EnsemblGRCm38mm10GRCm38
MGSCv371193,730,660 - 193,737,126 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,607,396 - 193,613,862 (+)NCBIMGSCv36mm8
Celera1198,856,473 - 198,862,938 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.01NCBI
Slc30a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813106,022,019 - 106,025,892 (+)NCBIGRCr8
mRatBN7.213103,491,037 - 103,494,910 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13103,491,037 - 103,494,910 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13106,010,977 - 106,014,850 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013107,394,814 - 107,398,687 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013104,609,816 - 104,613,689 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013110,677,810 - 110,681,683 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13110,677,810 - 110,681,683 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013115,236,547 - 115,240,420 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413107,980,864 - 107,986,519 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113108,169,967 - 108,175,623 (+)NCBI
Celera13102,913,629 - 102,934,174 (+)NCBICelera
Cytogenetic Map13q27NCBI
Slc30a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554065,639,341 - 5,668,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554065,662,312 - 5,668,331 (+)NCBIChiLan1.0ChiLan1.0
SLC30A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2137,823,879 - 37,831,549 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1137,789,091 - 37,796,722 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01187,139,544 - 187,147,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,002,503 - 192,009,515 (-)NCBIpanpan1.1PanPan1.1panPan2
SLC30A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.179,952,373 - 9,959,382 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl79,955,877 - 9,959,388 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha79,530,323 - 9,537,455 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.079,658,190 - 9,665,320 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl79,659,293 - 9,665,282 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.179,581,103 - 9,588,235 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.079,683,054 - 9,690,180 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.079,807,567 - 9,814,703 (-)NCBIUU_Cfam_GSD_1.0
Slc30a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934464,548,981 - 64,555,903 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365571,789,263 - 1,796,541 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365571,789,263 - 1,796,548 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC30A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9131,633,585 - 131,640,672 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19131,633,586 - 131,636,934 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29144,671,051 - 144,677,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC30A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12517,926,656 - 17,933,805 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2517,926,078 - 17,933,783 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605518,450,966 - 18,458,625 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc30a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477117,262,866 - 17,270,340 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477117,262,933 - 17,269,795 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC30A1
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11
pathogenic
GRCh38/hg38 1q32.2-44(chr1:209646207-248931113)x3 copy number gain See cases [RCV000051861] Chr1:209646207..248931113 [GRCh38]
Chr1:209819552..249225312 [GRCh37]
Chr1:207886175..247191935 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q32.2-44(chr1:209963625-248918469)x3 copy number gain See cases [RCV000134979] Chr1:209963625..248918469 [GRCh38]
Chr1:210136970..249212668 [GRCh37]
Chr1:208203593..247179291 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh38/hg38 1q32.2-32.3(chr1:208063461-211907812)x1 copy number loss See cases [RCV000138122] Chr1:208063461..211907812 [GRCh38]
Chr1:208236806..212081154 [GRCh37]
Chr1:206303429..210147777 [NCBI36]
Chr1:1q32.2-32.3
likely benign
GRCh38/hg38 1q32.1-42.12(chr1:204764914-225408698)x3 copy number gain See cases [RCV000142054] Chr1:204764914..225408698 [GRCh38]
Chr1:204734042..225596400 [GRCh37]
Chr1:203000665..223663023 [NCBI36]
Chr1:1q32.1-42.12
pathogenic
GRCh38/hg38 1q32.2-44(chr1:207346642-248930485)x3 copy number gain See cases [RCV000143727] Chr1:207346642..248930485 [GRCh38]
Chr1:207519987..249224684 [GRCh37]
Chr1:205586610..247191307 [NCBI36]
Chr1:1q32.2-44
pathogenic
GRCh37/hg19 1q31.3-42.13(chr1:197811907-228997888)x3 copy number gain See cases [RCV000240137] Chr1:197811907..228997888 [GRCh37]
Chr1:1q31.3-42.13
pathogenic
GRCh37/hg19 1q31.3-44(chr1:195483439-249213000)x3 copy number gain See cases [RCV000449172] Chr1:195483439..249213000 [GRCh37]
Chr1:1q31.3-44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q32.1-32.3(chr1:204682513-212815646) copy number loss Global developmental delay [RCV000626524] Chr1:204682513..212815646 [GRCh37]
Chr1:1q32.1-32.3
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q25.3-41(chr1:185644663-221698833)x3 copy number gain not provided [RCV000749265] Chr1:185644663..221698833 [GRCh37]
Chr1:1q25.3-41
pathogenic
GRCh37/hg19 1q32.3(chr1:211750362-211753094)x1 copy number loss not provided [RCV000749352] Chr1:211750362..211753094 [GRCh37]
Chr1:1q32.3
benign
GRCh37/hg19 1q32.3(chr1:211751208-211753094)x1 copy number loss not provided [RCV000749353] Chr1:211751208..211753094 [GRCh37]
Chr1:1q32.3
benign
GRCh37/hg19 1q32.3(chr1:211752047-211753094)x1 copy number loss not provided [RCV000749354] Chr1:211752047..211753094 [GRCh37]
Chr1:1q32.3
benign
GRCh37/hg19 1q25.3-44(chr1:182388773-249111240)x3 copy number gain not provided [RCV000845852] Chr1:182388773..249111240 [GRCh37]
Chr1:1q25.3-44
pathogenic
GRCh37/hg19 1q32.1-32.3(chr1:206329070-213263817)x3 copy number gain not provided [RCV000848713] Chr1:206329070..213263817 [GRCh37]
Chr1:1q32.1-32.3
uncertain significance
GRCh37/hg19 1q32.1-44(chr1:204045948-249218992)x3 copy number gain See cases [RCV001007407] Chr1:204045948..249218992 [GRCh37]
Chr1:1q32.1-44
pathogenic
GRCh37/hg19 1q32.2-44(chr1:210152794-249218992)x3 copy number gain See cases [RCV001194578] Chr1:210152794..249218992 [GRCh37]
Chr1:1q32.2-44
pathogenic
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44
uncertain significance
GRCh37/hg19 1q31.3-44(chr1:197867914-249224684)x3 copy number gain See cases [RCV002287837] Chr1:197867914..249224684 [GRCh37]
Chr1:1q31.3-44
pathogenic
GRCh38/hg38 1q32.2-42.13(chr1:228006998-228061271)x2 copy number loss Orofacial cleft 2 [RCV002481175] Chr1:228006998..228061271 [GRCh38]
Chr1:1q32.2-42.13
association
GRCh37/hg19 1q25.3-32.3(chr1:181453460-213107248)x3 copy number gain not provided [RCV002475637] Chr1:181453460..213107248 [GRCh37]
Chr1:1q25.3-32.3
pathogenic
NM_021194.3(SLC30A1):c.98C>T (p.Ser33Leu) single nucleotide variant Inborn genetic diseases [RCV002664565] Chr1:211578515 [GRCh38]
Chr1:211751857 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_021194.3(SLC30A1):c.373C>G (p.Leu125Val) single nucleotide variant Inborn genetic diseases [RCV003255828] Chr1:211578240 [GRCh38]
Chr1:211751582 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_021194.3(SLC30A1):c.824G>T (p.Gly275Val) single nucleotide variant Inborn genetic diseases [RCV003220767] Chr1:211576088 [GRCh38]
Chr1:211749430 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_021194.3(SLC30A1):c.1364C>G (p.Ser455Cys) single nucleotide variant Inborn genetic diseases [RCV003282378] Chr1:211575548 [GRCh38]
Chr1:211748890 [GRCh37]
Chr1:1q32.3
uncertain significance
NM_021194.3(SLC30A1):c.1474G>C (p.Val492Leu) single nucleotide variant Inborn genetic diseases [RCV003202184] Chr1:211575438 [GRCh38]
Chr1:211748780 [GRCh37]
Chr1:1q32.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1456
Count of miRNA genes:762
Interacting mature miRNAs:904
Transcripts:ENST00000367001
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH102049  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,748,618 - 211,748,763UniSTSGRCh37
Build 361209,815,241 - 209,815,386RGDNCBI36
Celera1184,975,715 - 184,975,860RGD
Cytogenetic Map1q32.3UniSTS
HuRef1182,426,014 - 182,426,159UniSTS
GeneMap99-GB4 RH Map1694.71UniSTS
MARC_17913-17914:1025020546:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,748,498 - 211,749,023UniSTSGRCh37
Build 361209,815,121 - 209,815,646RGDNCBI36
Celera1184,975,595 - 184,976,120RGD
HuRef1182,425,894 - 182,426,419UniSTS
SLC30A1_3894  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371211,748,654 - 211,749,223UniSTSGRCh37
Build 361209,815,277 - 209,815,846RGDNCBI36
Celera1184,975,751 - 184,976,320RGD
HuRef1182,426,050 - 182,426,619UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 889 1019 1345 512 955 456 3080 242 1789 279 1101 1281 68 1037 1652 3
Low 1543 1947 378 110 975 8 1236 1910 1919 138 348 327 102 167 1097 1
Below cutoff 18 16 39 41 1 1 1 39 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA853540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB451467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC105275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF048701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF323590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF364518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI467909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI621266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW183618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC121015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC121016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE744293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF057194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB990012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF529684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U68494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000367001   ⟹   ENSP00000355968
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1211,571,568 - 211,579,161 (-)Ensembl
RefSeq Acc Id: NM_021194   ⟹   NP_067017
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,571,568 - 211,579,161 (-)NCBI
GRCh371211,748,381 - 211,752,099 (-)ENTREZGENE
Build 361209,815,004 - 209,818,722 (-)NCBI Archive
HuRef1182,425,777 - 182,429,495 (-)ENTREZGENE
CHM1_11213,020,769 - 213,024,487 (-)NCBI
T2T-CHM13v2.01210,817,650 - 210,825,243 (-)NCBI
Sequence:
RefSeq Acc Id: NP_067017   ⟸   NM_021194
- UniProtKB: Q0VAK9 (UniProtKB/Swiss-Prot),   Q9BZF6 (UniProtKB/Swiss-Prot),   Q9Y6M5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000355968   ⟸   ENST00000367001

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y6M5-F1-model_v2 AlphaFold Q9Y6M5 1-507 view protein structure

Promoters
RGD ID:6786874
Promoter ID:HG_KWN:7214
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000089820
Position:
Human AssemblyChrPosition (strand)Source
Build 361209,817,991 - 209,819,677 (-)MPROMDB
RGD ID:6858910
Promoter ID:EPDNEW_H2620
Type:initiation region
Name:SLC30A1_2
Description:solute carrier family 30 member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2621  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,578,738 - 211,578,798EPDNEW
RGD ID:6858912
Promoter ID:EPDNEW_H2621
Type:initiation region
Name:SLC30A1_1
Description:solute carrier family 30 member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2620  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381211,578,887 - 211,578,947EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11012 AgrOrtholog
COSMIC SLC30A1 COSMIC
Ensembl Genes ENSG00000170385 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000367001 ENTREZGENE
  ENST00000367001.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1510.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000170385 GTEx
HGNC ID HGNC:11012 ENTREZGENE
Human Proteome Map SLC30A1 Human Proteome Map
InterPro Cation_efflux UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_efflux_CTD_sf UniProtKB/Swiss-Prot
  Cation_efflux_TMD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7779 UniProtKB/Swiss-Prot
NCBI Gene 7779 ENTREZGENE
OMIM 609521 OMIM
PANTHER FI23527P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC TRANSPORTER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cation_efflux UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA35882 PharmGKB
Superfamily-SCOP SSF160240 UniProtKB/Swiss-Prot
  SSF161111 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q0VAK9 ENTREZGENE
  Q96KD7_HUMAN UniProtKB/TrEMBL
  Q9BZF6 ENTREZGENE
  Q9Y6M5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q0VAK9 UniProtKB/Swiss-Prot
  Q9BZF6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 SLC30A1  solute carrier family 30 member 1    solute carrier family 30 (zinc transporter), member 1  Symbol and/or name change 5135510 APPROVED