Gene: LOC360231 (MHC class I RT1.O type 149 processed pseudogene) Rattus norvegicus |
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Analyze |
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Symbol: |
LOC360231 |
Name: |
MHC class I RT1.O type 149 processed pseudogene |
RGD ID: |
727839 |
Description: |
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Type: |
pseudo
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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mRatBN7.2 | 20 | 2,684,559 - 2,743,176 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | Rnor_6.0 | 20 | 3,189,501 - 3,251,252 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 20 | 174,111 - 174,408 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 20 | 2,863,973 - 2,888,873 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 20 | 2,830,018 - 2,889,097 (+) | NCBI | | | | | Celera | 20 | 114,972 - 169,681 (+) | NCBI | | Celera | | | Cytogenetic Map | 20 | p12 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
QTLs in Region (mRatBN7.2)
724519 | Bp144 | Blood pressure QTL 144 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 20 | 1 | 3624629 | Rat | 1354642 | Despr15 | Despair related QTL 15 | | 0.0027 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 20 | 1 | 24159021 | Rat | 1600382 | Edcs3 | Endometrial carcinoma susceptibility QTL3 | 3.5 | 0.003 | uterus morphology trait (VT:0001120) | percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) | 20 | 1 | 25159026 | Rat | 2317851 | Alcrsp22 | Alcohol response QTL 22 | 3.2 | 0.05 | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 20 | 1 | 27339237 | Rat | 1641893 | Alcrsp7 | Alcohol response QTL 7 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 20 | 1 | 27339237 | Rat | 8694189 | Bw153 | Body weight QTL 153 | 3.13 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 20 | 1 | 29191651 | Rat | 9590275 | Scort15 | Serum corticosterone level QTL 15 | 3.48 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 20 | 1 | 29191651 | Rat | 7411650 | Foco23 | Food consumption QTL 23 | 20.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 20 | 1 | 29191651 | Rat | 9590109 | Sffal8 | Serum free fatty acids level QTL 8 | 5.32 | 0.01 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 20 | 1 | 29191651 | Rat | 9589155 | Insul32 | Insulin level QTL 32 | 6.38 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 20 | 1 | 29191651 | Rat | 6893685 | Bw111 | Body weight QTL 111 | 2.7 | 0.004 | body mass (VT:0001259) | body weight (CMO:0000012) | 20 | 1 | 32578807 | Rat | 7411668 | Foco32 | Food consumption QTL 32 | 8 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 20 | 1 | 36600972 | Rat | 9590252 | Scort12 | Serum corticosterone level QTL 12 | 20.46 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 20 | 1 | 36600972 | Rat | 2305926 | Iddm37 | Insulin dependent diabetes mellitus QTL 37 | 6 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 20 | 1527842 | 46527842 | Rat | 2306850 | Pia40 | Pristane induced arthritis QTL 40 | | 0.0001 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 20 | 1527959 | 5304575 | Rat | 1641915 | Colcr9 | Colorectal carcinoma resistance QTL 9 | 2.97 | 0.0024 | intestine integrity trait (VT:0010554) | benign colorectal tumor number (CMO:0001795) | 20 | 1530655 | 46530655 | Rat | 1598816 | Memor12 | Memory QTL 12 | 2.4 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 20 | 2606836 | 47606836 | Rat | 61448 | Ciaa1 | CIA Autoantibody QTL 1 | 30 | 0.001 | blood autoantibody amount (VT:0003725) | calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281) | 20 | 2646395 | 4597031 | Rat | 61472 | Aia1 | Adjuvant induced arthritis QTL 1 | 18 | 0.001 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 20 | 2646395 | 4597031 | Rat | |
Markers in Region
BI284484 |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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mRatBN7.2 | 20 | 2,725,313 - 2,725,503 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 20 | 3,233,394 - 3,233,583 | NCBI | Rnor6.0 | Rnor_5.0 | 20 | 5,331,560 - 5,331,749 | UniSTS | Rnor5.0 | RGSC_v3.4 | 20 | 2,871,015 - 2,871,204 | UniSTS | RGSC3.4 | Celera | 20 | 152,039 - 152,228 | UniSTS | | RH 3.4 Map | 20 | 15.8 | UniSTS | | Cytogenetic Map | 20 | p12 | UniSTS | |
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RH131520 |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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mRatBN7.2 | 20 | 2,725,366 - 2,725,579 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 20 | 3,233,447 - 3,233,659 | NCBI | Rnor6.0 | Rnor_5.0 | 20 | 5,331,613 - 5,331,825 | UniSTS | Rnor5.0 | RGSC_v3.4 | 20 | 2,871,068 - 2,871,280 | UniSTS | RGSC3.4 | Celera | 20 | 152,092 - 152,304 | UniSTS | | RH 3.4 Map | 20 | 52.42 | UniSTS | | Cytogenetic Map | 20 | p12 | UniSTS | |
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Expression
Sequence
RefSeq Acc Id: |
NR_002597 |
RefSeq Status: |
PROVISIONAL |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 20 | 2,684,559 - 2,743,176 (+) | NCBI | Rnor_6.0 | 20 | 3,189,501 - 3,251,252 (+) | NCBI | Rnor_5.0 | 20 | 174,111 - 174,408 (-) | NCBI | RGSC_v3.4 | 20 | 2,863,973 - 2,888,873 (+) | RGD | Celera | 20 | 114,972 - 169,681 (+) | NCBI |
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Sequence: |
AGAAGACTTAAAACAACCCTGACACCATGCTCTGACACTATGTGGGCTCTGATCTTCTGCTTCC TGAGTCACCCCCGAGACACTGGAGCCCGATCACACTCTCTGCACTATTCTTACTCAGCCGTGAC AGAGCCGGGCCCAGGAGTTCCTGCATTTTTTGCCAGTGGCTTTGTAGATAACCAGCCCTTCATC CACTATGACAGTAGGAAGATGGAGGCAGAGCCTTGTGCTGACTGGCTGAGGGAAAATCCATATT ACTTTGATGAGGAGACCCAGGTTTTCACCAATCGGATGAAGATCTACCAGTTGAAGCCTGAGAA ACATTCAGCAATACTACAACAGCTCTGGTGACCGGAGTCAGAGAGCAGATGGCTTCTACCAGCA AGCAGGCCCTCACACCCTCCAGTTCACGTACGGCTGTGAGATGCAGGACAACAGGACCACAGGG CACTGGCAGTATGGCTACGATGGCAGGGATTACCTGACCTTGGACTTGGACTCTATGCAATATA CAGCAGCCACCTTCATTGCTGGCTACACCAAGCACAAGTGGCAAAACAATGAGTACTGGCTGCA GAGAGAGAAGACCTACTTGGAGAAGGAGTGTGTCCTGTGGCTAAAGAGATACTTAACTATGGGA GGAGAGAACTTTACCCGAGCTGACCCTCCACAGACAACAGTGACACACCACCCCAGACCTGAAG GTGATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCA GTTGAATGGGGAGGACCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTACAGGGGATGGA ACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAAGTACACATGCCATG TGGAGCATGAGGGGCTGCCTGAGCCGCTTACCCAGAGATGGGAGCCTCCTTCATCCACTGATTC CAACATGGAAACCAATGTCATTTATGTTGTCGTTGGAGCCGTCTCTGCTGTGGCCATTATTGGA GCTGTGATCATTGGAGCTGTGGTGGCTGTTGTGAGGAAGAGGAGGAGAAACACAGGTGGATATG AGGAGACTACGCCCCTGCTCCAGCATGAAGACAGCTGCCTGGAGTGGACTGAGTGACAGACGAT GTGTTCAGGTCTCTCCTGTGACATCCAGAGCCCTCAGTTCTCTTTAGACACCAGTGTCTGATGT TCCCTGTGATTCTATGGCTTCAGTGTGAAGAACTGTGGAGCCCAGCCTGCCCTGCACTTCAGAC CCTGTCCCTGCACTGCCTGTGTTCCCTACCAAGGCCGAACCTTGCTGGTCCAGCCTGGGGGGTC GGTGGTGGAGACATCTGCATCCTGAACCTTTGTGCCACCCTGAGCTTCAGCCCCTCACTTCACA CTGAGAATAAGAATCTGAGTGTGAGAGGTTGGGGATTTAGCTCAGTGGTAGAGGACTTTCCTAG AAAGCGCAAGGCCCTGGGTTGGATCCTCAGCTCCGGGGGGAAGGGGGGGAGAATCTGAGTGTGA ACTTGATTGTTCACATCCTTGACGCAAGTGTGGATGGCTTTTTAAATTACTGGATTCAGAATAC TTAAAAAAAAAAAAAAAAAAA
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2005-10-12 |
LOC360231 |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
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