Gna12 (G protein subunit alpha 12) - Rat Genome Database

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Gene: Gna12 (G protein subunit alpha 12) Rattus norvegicus
Analyze
Symbol: Gna12
Name: G protein subunit alpha 12
RGD ID: 71018
Description: Enables D5 dopamine receptor binding activity. Involved in response to xenobiotic stimulus. Acts upstream of or within G protein-coupled receptor signaling pathway; negative regulation of vascular associated smooth muscle cell migration; and negative regulation of vascular associated smooth muscle cell proliferation. Located in brush border membrane. Orthologous to human GNA12 (G protein subunit alpha 12); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; sphingosine 1-phosphate signaling pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: g alpha-12; G-protein subunit alpha-12; guanine nucleotide binding protein (G protein) alpha 12; guanine nucleotide binding protein, alpha 12; guanine nucleotide-binding protein subunit alpha-12; heterotrimeric guanine nucleotide-binding protein 1m1; Hg1m1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81218,919,629 - 19,000,185 (+)NCBIGRCr8
mRatBN7.21213,805,580 - 13,886,255 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1213,805,698 - 13,886,255 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,613,893 - 14,694,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,237,164 - 15,317,743 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,264,094 - 14,344,680 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01215,890,202 - 15,971,212 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,890,170 - 15,971,212 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01217,889,996 - 17,970,852 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,275,708 - 14,354,843 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,305,635 - 14,384,771 (+)NCBI
Celera1215,567,135 - 15,646,904 (+)NCBICelera
Cytogenetic Map12q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1,1-trichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
calcidiol  (EXP)
carbamazepine  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP)
clofibrate  (ISO)
clozapine  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (EXP,ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diazinon  (EXP)
dichloroacetic acid  (ISO)
diethylstilbestrol  (EXP)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
finasteride  (EXP)
fipronil  (EXP)
flavonoids  (EXP)
fluoxetine  (EXP)
folic acid  (ISO)
gamma-hexachlorocyclohexane  (EXP)
genistein  (EXP)
glyphosate  (ISO)
haloperidol  (EXP)
hydrogen cyanide  (ISO)
indometacin  (ISO)
inulin  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
sunitinib  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Novel Adipokine, FAM19A5, Inhibits Neointima Formation After Injury Through Sphingosine-1-Phosphate Receptor 2. Wang Y, etal., Circulation. 2018 Jul 3;138(1):48-63. doi: 10.1161/CIRCULATIONAHA.117.032398. Epub 2018 Feb 16.
10. Galpha12- and Galpha13-protein subunit linkage of D5 dopamine receptors in the nephron. Zheng S, etal., Hypertension 2003 Mar;41(3):604-10.
Additional References at PubMed
PMID:9305907   PMID:10037795   PMID:12077299   PMID:15525651   PMID:15826947   PMID:17533154   PMID:18155002   PMID:18480127   PMID:19043202   PMID:19095998   PMID:21423176   PMID:21633357  
PMID:22609986   PMID:25989500  


Genomics

Comparative Map Data
Gna12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81218,919,629 - 19,000,185 (+)NCBIGRCr8
mRatBN7.21213,805,580 - 13,886,255 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1213,805,698 - 13,886,255 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,613,893 - 14,694,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,237,164 - 15,317,743 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,264,094 - 14,344,680 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01215,890,202 - 15,971,212 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,890,170 - 15,971,212 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01217,889,996 - 17,970,852 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,275,708 - 14,354,843 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,305,635 - 14,384,771 (+)NCBI
Celera1215,567,135 - 15,646,904 (+)NCBICelera
Cytogenetic Map12q11NCBI
GNA12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3872,728,105 - 2,844,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl72,728,105 - 2,844,308 (-)EnsemblGRCh38hg38GRCh38
GRCh3772,767,739 - 2,883,942 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,734,265 - 2,850,485 (-)NCBINCBI36Build 36hg18NCBI36
Build 3472,540,980 - 2,657,200NCBI
Celera72,736,337 - 2,852,578 (-)NCBICelera
Cytogenetic Map7p22.3-p22.2NCBI
HuRef72,686,290 - 2,802,582 (-)NCBIHuRef
CHM1_172,767,404 - 2,883,659 (-)NCBICHM1_1
T2T-CHM13v2.072,841,649 - 2,957,882 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v272,815,641 - 2,931,835 (-)NCBI
Gna12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,745,699 - 140,816,186 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,744,163 - 140,816,186 (-)EnsemblGRCm39 Ensembl
GRCm385140,759,944 - 140,830,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,758,408 - 140,830,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv375141,235,898 - 141,306,385 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365141,012,418 - 141,082,905 (-)NCBIMGSCv36mm8
Celera5137,821,586 - 137,847,268 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map579.3NCBI
Gna12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546012,534,168 - 12,622,537 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546012,534,210 - 12,628,090 (+)NCBIChiLan1.0ChiLan1.0
GNA12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,686,160 - 7,801,169 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1756,010,860 - 56,125,869 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,989,832 - 3,104,848 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.173,081,004 - 3,147,356 (-)NCBIpanpan1.1PanPan1.1panPan2
GNA12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1614,375,144 - 14,476,018 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl614,413,576 - 14,473,764 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha615,830,291 - 15,937,728 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0614,493,454 - 14,600,978 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl614,493,362 - 14,600,974 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1614,298,807 - 14,406,220 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0614,226,168 - 14,333,618 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0614,511,840 - 14,619,319 (+)NCBIUU_Cfam_GSD_1.0
Gna12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344142,508,304 - 142,603,457 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936823447,917 - 543,140 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936823447,979 - 543,134 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNA12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl32,004,471 - 2,105,952 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.132,002,494 - 2,105,937 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.231,963,865 - 2,020,488 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GNA12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12818,778,768 - 18,890,420 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2818,778,847 - 18,888,922 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660902,884,815 - 2,998,712 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gna12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,133,435 - 30,245,079 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,134,262 - 30,245,079 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gna12
189 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:582
Count of miRNA genes:287
Interacting mature miRNAs:352
Transcripts:ENSRNOT00000001654
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121300829619212979Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat

Markers in Region
RH128312  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21213,885,851 - 13,886,037 (+)MAPPERmRatBN7.2
Rnor_6.01215,970,809 - 15,970,994NCBIRnor6.0
Rnor_5.01217,970,449 - 17,970,634UniSTSRnor5.0
RGSC_v3.41214,356,391 - 14,356,576UniSTSRGSC3.4
Celera1215,646,501 - 15,646,686UniSTS
RH 3.4 Map12177.4UniSTS
Cytogenetic Map12q11UniSTS
RH144209  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21213,883,483 - 13,883,584 (+)MAPPERmRatBN7.2
Rnor_6.01215,968,441 - 15,968,541NCBIRnor6.0
Rnor_5.01217,968,081 - 17,968,181UniSTSRnor5.0
RGSC_v3.41214,354,023 - 14,354,123UniSTSRGSC3.4
Celera1215,644,133 - 15,644,233UniSTS
RH 3.4 Map12177.6UniSTS
Cytogenetic Map12q11UniSTS
BE097282  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21213,875,365 - 13,875,546 (+)MAPPERmRatBN7.2
Rnor_6.01215,960,325 - 15,960,505NCBIRnor6.0
Rnor_5.01217,959,963 - 17,960,143UniSTSRnor5.0
RGSC_v3.41214,345,973 - 14,346,153UniSTSRGSC3.4
Celera1215,636,104 - 15,636,284UniSTS
RH 3.4 Map12176.8UniSTS
Cytogenetic Map12q11UniSTS
RH138328  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21213,886,570 - 13,886,710 (+)MAPPERmRatBN7.2
Rnor_6.01215,971,528 - 15,971,667NCBIRnor6.0
Rnor_5.01217,971,168 - 17,971,307UniSTSRnor5.0
RGSC_v3.41214,357,110 - 14,357,249UniSTSRGSC3.4
Celera1215,647,220 - 15,647,359UniSTS
RH 3.4 Map12177.4UniSTS
Cytogenetic Map12q11UniSTS
RH141162  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21213,882,777 - 13,882,963 (+)MAPPERmRatBN7.2
Rnor_6.01215,967,735 - 15,967,920NCBIRnor6.0
Rnor_5.01217,967,375 - 17,967,560UniSTSRnor5.0
RGSC_v3.41214,353,317 - 14,353,502UniSTSRGSC3.4
Celera1215,643,427 - 15,643,612UniSTS
RH 3.4 Map12202.4UniSTS
Cytogenetic Map12q11UniSTS
OMY6173INRA  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera489,392,817 - 89,393,473UniSTS
Celera1215,573,775 - 15,575,270UniSTS
Cytogenetic Map12q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000001654   ⟹   ENSRNOP00000001654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1213,805,698 - 13,886,255 (+)Ensembl
Rnor_6.0 Ensembl1215,890,170 - 15,971,212 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,890,213 - 15,934,375 (+)Ensembl
RefSeq Acc Id: NM_031034   ⟹   NP_112296
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81218,919,629 - 19,000,185 (+)NCBI
mRatBN7.21213,805,698 - 13,886,255 (+)NCBI
Rnor_6.01215,890,202 - 15,971,212 (+)NCBI
Rnor_5.01217,889,996 - 17,970,852 (+)NCBI
RGSC_v3.41214,275,708 - 14,354,843 (+)RGD
Celera1215,567,135 - 15,646,904 (+)NCBI
Sequence:
RefSeq Acc Id: NP_112296   ⟸   NM_031034
- UniProtKB: Q63210 (UniProtKB/Swiss-Prot),   Q45QM2 (UniProtKB/TrEMBL),   Q45QM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000001654   ⟸   ENSRNOT00000001654
Protein Domains
G-alpha

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63210-F1-model_v2 AlphaFold Q63210 1-379 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698452
Promoter ID:EPDNEW_R8976
Type:initiation region
Name:Gna12_1
Description:G protein subunit alpha 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01215,890,093 - 15,890,153EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:71018 AgrOrtholog
BioCyc Gene G2FUF-19934 BioCyc
Ensembl Genes ENSRNOG00000001235 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055011424 UniProtKB/Swiss-Prot
  ENSRNOG00060029967 UniProtKB/Swiss-Prot
  ENSRNOG00065000095 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001654 ENTREZGENE
  ENSRNOT00000001654.8 UniProtKB/Swiss-Prot
  ENSRNOT00055019375 UniProtKB/Swiss-Prot
  ENSRNOT00060052063 UniProtKB/Swiss-Prot
  ENSRNOT00065000156 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.400.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Gprotein_alpha_12/13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gprotein_alpha_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GproteinA_insert UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:81663 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 81663 ENTREZGENE
PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT ALPHA-12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10218 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam G-alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gna12 PhenoGen
PRINTS GPROTEINA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPROTEINA12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001235 RatGTEx
  ENSRNOG00055011424 RatGTEx
  ENSRNOG00060029967 RatGTEx
  ENSRNOG00065000095 RatGTEx
SMART G_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47895 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt GNA12_RAT UniProtKB/Swiss-Prot
  Q45QM2 ENTREZGENE, UniProtKB/TrEMBL
  Q45QM3 ENTREZGENE, UniProtKB/TrEMBL
  Q63210 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Gna12  G protein subunit alpha 12  Gna12  guanine nucleotide binding protein (G protein) alpha 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Gna12  guanine nucleotide binding protein, alpha 12      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference