Nexn (nexilin (F actin binding protein))

Gene: Nexn (nexilin (F actin binding protein)) Rattus norvegicus

Analyze

Symbol:

Nexn

Name:

nexilin (F actin binding protein)

RGD ID:

708354

Description:

Enables actin filament binding activity. Predicted to be involved in several processes, including homophilic cell adhesion via plasma membrane adhesion molecules; neuron development; and regulation of cytoskeleton organization. Predicted to act upstream of or within response to bacterium. Located in Z disc and focal adhesion. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1CC and hypertrophic cardiomyopathy 20. Orthologous to human NEXN (nexilin F-actin binding protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC246172; nexilin

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NEXN (nexilin F-actin binding protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Nexn (nexilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nexn (nexilin F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NEXN (nexilin F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NEXN (nexilin F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nexn (nexilin F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NEXN (nexilin F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NEXN (nexilin F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nexn (nexilin F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Nexn (nexilin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	NEXN (nexilin F-actin binding protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nexn (nexilin (F actin binding protein))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nexn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	243,846,736 - 243,878,268 (-)	NCBI		GRCr8
mRatBN7.2	2	241,186,783 - 241,218,315 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	241,186,790 - 241,218,342 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	249,001,122 - 249,021,940 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	246,888,139 - 246,908,957 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	241,787,531 - 241,808,345 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	257,452,937 - 257,484,607 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	257,453,347 - 257,484,587 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	276,129,684 - 276,161,434 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	250,762,017 - 250,783,765 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	250,776,623 - 250,798,372 (-)	NCBI
Celera	2	233,122,059 - 233,142,757 (-)	NCBI		Celera
Cytogenetic Map	2	q45	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cardiomyopathy (ISO)

dilated cardiomyopathy (ISO)

dilated cardiomyopathy 1A (ISO)

dilated cardiomyopathy 1B (ISO)

dilated cardiomyopathy 1CC (ISO,ISS)

dilated cardiomyopathy 1H (ISO)

dilated cardiomyopathy 1S (ISO)

Dilated Cardiomyopathy with Left Ventricular Noncompaction (ISO)

familial hypertrophic cardiomyopathy (ISO)

genetic disease (ISO)

hypertrophic cardiomyopathy (ISO)

hypertrophic cardiomyopathy 1 (ISO)

hypertrophic cardiomyopathy 20 (ISO,ISS)

Left Ventricular Hypertrophy (ISO)

long QT syndrome (ISO)

Ventricular Premature Complexes (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

all-trans-retinoic acid (EXP,ISO)

ammonium chloride (EXP)

ammonium hexachloroplatinate (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

bucladesine (ISO)

cadmium dichloride (EXP)

calcitriol (ISO)

cantharidin (ISO)

carbamazepine (ISO)

choline (ISO)

chrysene (ISO)

cisplatin (EXP,ISO)

cocaine (ISO)

copper atom (EXP)

copper(0) (EXP)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP,ISO)

diethylstilbestrol (EXP)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

furan (EXP)

glycidyl methacrylate (ISO)

hexadecanoic acid (ISO)

hexamethylene diisocyanate (ISO)

L-methionine (ISO)

leflunomide (ISO)

levonorgestrel (ISO)

lipopolysaccharide (ISO)

medroxyprogesterone acetate (ISO)

methyl methanesulfonate (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

ochratoxin A (EXP)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

pioglitazone (ISO)

progesterone (EXP)

protein kinase inhibitor (ISO)

quercetin (ISO)

resorcinol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

tamoxifen (ISO)

temozolomide (ISO)

testosterone (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

triadimefon (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IBA)

dendrite self-avoidance (IBA)

homophilic cell adhesion via plasma membrane adhesion molecules (IBA)

mitochondrial fusion (IEA)

regulation of cell migration (IEA,ISO,ISS)

regulation of cytoskeleton organization (IEA,ISO,ISS)

response to bacterium (ISO)

Cellular Component

actin cytoskeleton (IEA,ISO)

adherens junction (IEA)

axon (IBA)

cell-substrate junction (IDA)

cytoskeleton (IEA)

focal adhesion (IBA,IDA)

plasma membrane (IBA,IEA,ISO)

Z disc (IBA,IDA)

Molecular Function

actin filament binding (IDA,IEA,ISO)

cell-cell adhesion mediator activity (IBA)

protein binding (ISO)

structural constituent of muscle (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Nexilin mutations destabilize cardiac Z-disks and lead to dilated cardiomyopathy.	Hassel D, etal., Nat Med. 2009 Nov;15(11):1281-8. doi: 10.1038/nm.2037. Epub 2009 Nov 1.
3.	Nexilin: a novel actin filament-binding protein localized at cell-matrix adherens junction.	Ohtsuka T, etal., J Cell Biol 1998 Nov 30;143(5):1227-38.
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15823560	PMID:21423176	PMID:23012479	PMID:23383252	PMID:25062485	PMID:35352799

Genomics

Comparative Map Data

Nexn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	243,846,736 - 243,878,268 (-)	NCBI		GRCr8
mRatBN7.2	2	241,186,783 - 241,218,315 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	241,186,790 - 241,218,342 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	249,001,122 - 249,021,940 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	246,888,139 - 246,908,957 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	241,787,531 - 241,808,345 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	257,452,937 - 257,484,607 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	257,453,347 - 257,484,587 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	276,129,684 - 276,161,434 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	250,762,017 - 250,783,765 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	250,776,623 - 250,798,372 (-)	NCBI
Celera	2	233,122,059 - 233,142,757 (-)	NCBI		Celera
Cytogenetic Map	2	q45	NCBI

NEXN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	77,888,624 - 77,943,895 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	77,888,513 - 77,943,895 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	78,354,309 - 78,409,580 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	78,126,788 - 78,182,168 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	78,095,828 - 78,120,930	NCBI
Celera	1	76,593,252 - 76,648,659 (+)	NCBI		Celera
Cytogenetic Map	1	p31.1	NCBI
HuRef	1	76,485,827 - 76,541,199 (+)	NCBI		HuRef
CHM1_1	1	78,470,589 - 78,525,920 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	77,727,428 - 77,782,694 (+)	NCBI		T2T-CHM13v2.0

Nexn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	151,942,619 - 151,972,000 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	151,942,619 - 151,971,987 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	152,236,982 - 152,266,350 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	152,236,982 - 152,266,350 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	151,899,946 - 151,929,284 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	152,174,368 - 152,216,670 (-)	NCBI		MGSCv36	mm8
Celera	3	158,714,841 - 158,744,187 (-)	NCBI		Celera
Cytogenetic Map	3	H3	NCBI
cM Map	3	77.07	NCBI

Nexn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	15,278,526 - 15,299,659 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	15,278,526 - 15,299,654 (-)	NCBI	ChiLan1.0	ChiLan1.0

NEXN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	148,945,882 - 149,003,523 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	148,107,166 - 148,166,147 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	77,104,269 - 77,162,517 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	79,187,779 - 79,247,161 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	79,187,779 - 79,244,732 (+)	Ensembl	panpan1.1		panPan2

NEXN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	68,963,953 - 69,014,874 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	68,964,187 - 69,107,009 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	71,621,447 - 71,672,401 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	69,548,680 - 69,599,798 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	69,549,074 - 69,597,504 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	69,055,004 - 69,106,149 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	69,000,304 - 69,051,252 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	69,486,699 - 69,537,684 (-)	NCBI		UU_Cfam_GSD_1.0

Nexn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	89,191,107 - 89,217,953 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936571	4,703,955 - 4,729,018 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936571	4,704,009 - 4,728,305 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NEXN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	135,318,754 - 135,382,882 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	135,315,000 - 135,382,911 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	125,500,984 - 125,502,455 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NEXN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	55,229,093 - 55,286,703 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	55,234,782 - 55,285,755 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	62,227,938 - 62,283,369 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nexn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	19,313,264 - 19,349,394 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	19,313,262 - 19,357,052 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nexn
120 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	151
Count of miRNA genes:	85
Interacting mature miRNAs:	93
Transcripts:	ENSRNOT00000016967, ENSRNOT00000066780
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	193452645	245889826	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	200990457	245990457	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	211744537	249053267	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	211744537	249053267	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	211744537	249053267	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	211744537	249053267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	211744537	249053267	Rat
2317885	Alcrsp28	Alcohol response QTL 28	2.1	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	212828222	249053267	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	214226044	247136170	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
9587428	Epfw6	Epididymal fat weight QTL 6	7.47	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	2	223389739	249053267	Rat
7411555	Bw132	Body weight QTL 132		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	2	223389739	249053267	Rat
631563	Hcuc3	Hepatic copper content QTL 3	3.87		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	2	229059610	249053267	Rat

Markers in Region

AA799423

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	241,186,902 - 241,186,998 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	257,453,057 - 257,453,152	NCBI	Rnor6.0
Rnor_5.0	2	276,129,804 - 276,129,899	UniSTS	Rnor5.0
RGSC_v3.4	2	250,761,528 - 250,761,623	UniSTS	RGSC3.4
Celera	2	233,121,570 - 233,121,665	UniSTS
RH 3.4 Map	2	1650.31	UniSTS
Cytogenetic Map	2	q45	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	2	2	2	2	8	11	4	22	30	11	8
Low			45	29	17	29			70	13	11
Below cutoff			10	10		10

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_139230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_139231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF056034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF056035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU723599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000016967 ⟹ ENSRNOP00000016968

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	241,186,798 - 241,207,216 (-)	Ensembl
Rnor_6.0 Ensembl	2	257,453,546 - 257,474,733 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000066780 ⟹ ENSRNOP00000058811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	241,186,798 - 241,218,342 (-)	Ensembl
Rnor_6.0 Ensembl	2	257,453,546 - 257,474,733 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083344 ⟹ ENSRNOP00000073825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	241,186,798 - 241,207,216 (-)	Ensembl
Rnor_6.0 Ensembl	2	257,453,347 - 257,484,587 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099274 ⟹ ENSRNOP00000080182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	241,186,798 - 241,218,342 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100634 ⟹ ENSRNOP00000096571

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	241,186,790 - 241,218,342 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110679 ⟹ ENSRNOP00000077161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	241,186,790 - 241,218,342 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111795 ⟹ ENSRNOP00000082246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	241,186,790 - 241,218,342 (-)	Ensembl

RefSeq Acc Id:

NM_139230 ⟹ NP_631976

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,846,736 - 243,878,152 (-)	NCBI
mRatBN7.2	2	241,186,783 - 241,218,200 (-)	NCBI
Rnor_6.0	2	257,453,546 - 257,474,733 (-)	NCBI
Rnor_5.0	2	276,129,684 - 276,161,434 (-)	NCBI
RGSC_v3.4	2	250,762,017 - 250,783,765 (-)	RGD
Celera	2	233,122,059 - 233,142,757 (-)	RGD

Sequence:

show sequence

ATGAATGACGTGTCACAGAAGGCAGAGATTCTGCTTTCTTCATCTAAACCTGTCCCCAAATCCT
ATGTGCCAAAACTCGGCAAGGGAGATGTAAAGGATAAATTTGAAGCCATGCAGAGGGCCAGGGA
AGAAAGAAATCAAAGGCGATCTAGAGATGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAA
AGAGAATGGAACAGGAGAAAGCAGGAGATTAAAGACATGCTCGCTTCTGATGAGGAAGAAGAGC
CGTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTCACAGGGACAGTTAAAGGCAAATTTGATGA
AATGGAGAAACACAGACAGGAAGAACAAAGGAAGAGAACAGAAGAGGAGAGAAAACGCAGAATT
GAGCAGGATCTGTTAGAAAAGAGGAAAATGCAGCGTGAATTAGCAAAAAGAGCTGAGCAGGAAG
GAGATGACTCACTCCTTATAACAGTGGTCCCTGCCAAATCATACAGAGCAGCTGCAAACAGGAA
GGATCCTGAGGACCTGGACAGAGAACACAGGAATGGAAGGGTTAGTCAGGAAGAAGAAAAGACA
AGACATGAAGAAGAGTGCAGAGCTCTCAAAGAAGCAAAATGCCTTTCATTGGTCATGGATGATG
AAACAGAGGCCAAAAAAGAATCACGTTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGA
ACGACAAAGACAAGAAAACCGCAAGAAGCAAGCAGAAGAGGAAGCAAGACGGCGCTTAGAAGAA
GAGAGGCGTGCCTTTGAGGAAGCAAGGCGGAACATGGTAAACGAGGAGGATGAAAGCCAAGACA
CAGAAACGGTTTTTAAAGAGTACCGCCCAGGAAAACTCCGACTCAGTTTTGAGGAAATAGAAAG
GCAAAGGAGAGAAGAGGAAAAACGAAAGGCCGAGGAGGAGGCGCGAAGGAGGATGGAGGAGGAG
AAGAAGGCATTTGCTGAAGCCAGGAGAAGCATGGTATTAGATGATGATTCCCCAGAGATTTATA
AAGCAGTCTCTCAAGAATCTCTAACGCCTGGAAAACTGGAAATTAATTTTGAACAATTATTAAG
ACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGAAGAACGGAGGCAAAAACTAGAAATGGAG
AAACAGGAATTTGAACAACTGAGACAAGAAATGGGAAAGGAAGAAGAAGAAAATGAAAGCTTTG
GGTTGAGTAGAGAATATGAAGAATTAATTAAATTAAAAAGGAGTGGTTCAATTCAAGCCAAAAA
TCTAAAAAGCAAGTTTGAAAAAATTGGACAGTTGTCTGAAAAAGAAGTACAGAAAAAGATAGAA
GAAGAGAGAGCAAAAAGGAGAGCAATTGACCTTGAAATTAAAGAGCGAGAAGCAGAAAACTTCC
ATGAGGATGATGATGTTGATGTAAAACCTGCAAAGAAGAGTGAGTCTCCCTTTACTCACAAAGT
GAACATGAAAGCCAGATTTGAACAAATGGCTAAGGCAAGACAAGAAGAAGAGCAAAGGAGAATT
GAAGAACAGAAGTTACTGCGGATGCAGTTTGAACAGAAAGAAATCGATGCAGCACTTCAGAAAA
AAAGAGAAGATGATGAGGAAGAAGAAGGTAGCATTGTTAACGGCTCCACTACTGAAGACGAAGA
GCAAACCAGATCAGGAGCCCCATGGTTCAAAAAGCCACTAAGAAATACCTCAGTTGTAGACAGT
GAGCCAGTGAGATTCACTGTGAAAGTGACAGGAGAACCCAAGCCAGAAGTTACGTGGTGGTTTG
AAGGAGAACTACTGCAGGATGGAGAAGACTATCAGTACATCGAAAGAGGAGAAACTTACTGCCT
GTATTTACCAGAAACTTTCCCCGAAGATGGAGGAGAATATATGTGTAAAGCAGTCAACAGTAAA
GGCTCAGCAGCGAGTACCTGTATTCTTACCATTGAAATGGATGACTACTAG

hide sequence

RefSeq Acc Id:

NM_139231 ⟹ NP_631977

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,846,736 - 243,878,152 (-)	NCBI
mRatBN7.2	2	241,186,783 - 241,218,200 (-)	NCBI
Rnor_6.0	2	257,453,546 - 257,474,733 (-)	NCBI
Rnor_5.0	2	276,129,684 - 276,161,434 (-)	NCBI
RGSC_v3.4	2	250,762,017 - 250,783,765 (-)	RGD
Celera	2	233,122,059 - 233,142,757 (-)	RGD

Sequence:

show sequence

ATGAATGACGTGTCACAGAAGGCAGAGATTAAAGACATGCTCGCTTCTGATGAGGAAGAAGAGC
CGTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTCACAGGGACAGTTAAAGGCAAATTTGATGA
AATGGAGAAACACAGACAGGAAGAACAAAGGAAGAGAACAGAAGAGGAGAGAAAACGCAGAATT
GAGCAGGATCTGTTAGAAAAGAGGAAAATGCAGCGTGAATTAGCAAAAAGAGCTGAGCAGATTG
AGGACATAAACAATACGGGAACCGAGTCCGCATCAGAGGAAGGAGATGACTCACTCCTTATAAC
AGTGGTCCCTGCCAAATCATACAGAGCAGCTGCAAACAGGAAGGATCCTGAGGACCTGGACAGA
GAACACAGGAATGGAAGGGTTAGTCAGGAAGAAGAAAAGACAAGACATGAAGAAGAGTGCAGAG
CTCTCAAAGAAGCAAAATGCCTTTCATTGGTCATGGATGATGAAACAGAGGCCAAAAAAGAATC
ACGTTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAACCGC
AAGAAGCAAGCAGAAGAGGAAGCAAGACGGCGCTTAGAAGAAGAGAGGCGTGCCTTTGAGGAAG
CAAGGCGGAACATGGTAAACGAGGAGGATGAAAGCCAAGACACAGAAACGGTTTTTAAAGAGTA
CCGCCCAGGAAAACTCCGACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGAGGAAAAA
CGAAAGGCCGAGGAGGAGGCGCGAAGGAGGATGGAGGAGGAGAAGAAGGCATTTGCTGAAGCCA
GGAGAAGCATGGTATTAGATGATGATTCCCCAGAGATTTATAAAGCAGTCTCTCAAGAATCTCT
AACGCCTGGAAAACTGGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGA
CGACGAACAGAGGAAGAACGGAGGCAAAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGA
GACAAGAAATGGGAAAGGAAGAAGAAGAAAATGAAAGCTTTGGGTTGAGTAGAGAATATGAAGA
ATTAATTAAATTAAAAAGGAGTGGTTCAATTCAAGCCAAAAATCTAAAAAGCAAGTTTGAAAAA
ATTGGACAGTTGTCTGAAAAAGAAGTACAGAAAAAGATAGAAGAAGAGAGAGCAAAAAGGAGAG
CAATTGACCTTGAAATTAAAGAGCGAGAAGCAGAAAACTTCCATGAGGATGATGATGTTGATGT
AAAACCTGCAAAGAAGAGTGAGTCTCCCTTTACTCACAAAGTGAACATGAAAGCCAGATTTGAA
CAAATGGCTAAGGCAAGACAAGAAGAAGAGCAAAGGAGAATTGAAGAACAGAAGTTACTGCGGA
TGCAGTTTGAACAGAAAGAAATCGATGCAGCACTTCAGAAAAAAAGAGAAGATGATGAGGAAGA
AGAAGGTAGCATTGTTAACGGCTCCACTACTGAAGACGAAGAGCAAACCAGATCAGGAGCCCCA
TGGTTCAAAAAGCCACTAAGAAATACCTCAGTTGTAGACAGTGAGCCAGTGAGATTCACTGTGA
AAGTGACAGGAGAACCCAAGCCAGAAGTTACGTGGTGGTTTGAAGGAGAACTACTGCAGGATGG
AGAAGACTATCAGTACATCGAAAGAGGAGAAACTTACTGCCTGTATTTACCAGAAACTTTCCCC
GAAGATGGAGGAGAATATATGTGTAAAGCAGTCAACAGTAAAGGCTCAGCAGCGAGTACCTGTA
TTCTTACCATTGAAATGGATGACTACTAG

hide sequence

RefSeq Acc Id:

XM_006233479 ⟹ XP_006233541

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,846,736 - 243,878,268 (-)	NCBI
mRatBN7.2	2	241,186,783 - 241,218,297 (-)	NCBI
Rnor_6.0	2	257,452,937 - 257,484,607 (-)	NCBI
Rnor_5.0	2	276,129,684 - 276,161,434 (-)	NCBI

Sequence:

show sequence

CGGGAGCGGCGGGGGCAGCGCGCAGAGCCGGACACGCAGCGCGGAGCGGGAGGAGCGGCGCCCC
GGCGGCGGCAGGCGGGTACAAGAATATACAAGGCTTCAGTCTGAAACCACACATAGCAAACATG
AATGACGTGTCACAGAAGGCAGAGATTCTGCTTTCTTCATCTAAACCTGTCCCCAAATCCTATG
TGCCAAAACTCGGCAAGGGAGATGTAAAGGATAAATTTGAAGCCATGCAGAGGGCCAGGGAAGA
AAGAAATCAAAGGCGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAAAGA
GAATGGAACAGGAGAAAGCAGGAGATTAAAGACATGCTCGCTTCTGATGAGGAAGAAGAGCCGT
CTAAAGTAGAAAAGGCTTATGTCCCAAAGCTCACAGGGACAGTTAAAGGCAAATTTGATGAAAT
GGAGAAACACAGACAGGAAGAACAAAGGAAGAGAACAGAAGAGGAGAGAAAACGCAGAATTGAG
CAGGATCTGTTAGAAAAGAGGAAAATGCAGCGTGAATTAGCAAAAAGAGCTGAGCAGATTGAGG
ACATAAACAATACGGGAACCGAGTCCGCATCAGAGGAAGGAGATGACTCACTCCTTATAACAGT
GGTCCCTGCCAAATCATACAGAGCAGCTGCAAACAGGAAGGATCCTGAGGACCTGGACAGAGAA
CACAGGAATGGAAGGGTTAGTCAGGAAGAAGAAAAGACAAGACATGAAGAAGAGTGCAGAGCTC
TCAAAGAAGCAAAATGCCTTTCATTGGTCATGGATGATGAAACAGAGGCCAAAAAAGAATCACG
TTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAACCGCAAG
AAGCAAGCAGAAGAGGAAGCAAGACGGCGCTTAGAAGAAGAGAGGCGTGCCTTTGAGGAAGCAA
GGCGGAACATGGTAAACGAGGAGGATGAAAGCCAAGACACAGAAACGGTTTTTAAAGAGTACCG
CCCAGGAAAACTCCGACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGAGGAAAAACGA
AAGGCCGAGGAGGAGGCGCGAAGGAGGATGGAGGAGGAGAAGAAGGCATTTGCTGAAGCCAGGA
GAAGCATGGTATTAGATGATGATTCCCCAGAGATTTATAAAGCAGTCTCTCAAGAATCTCTAAC
GCCTGGAAAACTGGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGA
CGAACAGAGGAAGAACGGAGGCAAAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGAGAC
AAGAAATGGGAAAGGAAGAAGAAGAAAATGAAAGCTTTGGGTTGAGTAGAGAATATGAAGAATT
AATTAAATTAAAAAGGAGTGGTTCAATTCAAGCCAAAAATCTAAAAAGCAAGTTTGAAAAAATT
GGACAGTTGTCTGAAAAAGAAGTACAGAAAAAGATAGAAGAAGAGAGAGCAAAAAGGAGAGCAA
TTGACCTTGAAATTAAAGAGCGAGAAGCAGAAAACTTCCATGAGGATGATGATGTTGATGTAAA
ACCTGCAAAGAAGAGTGAGTCTCCCTTTACTCACAAAGTGAACATGAAAGCCAGATTTGAACAA
ATGGCTAAGGCAAGACAAGAAGAAGAGCAAAGGAGAATTGAAGAACAGAAGTTACTGCGGATGC
AGTTTGAACAGAAAGAAATCGATGCAGCACTTCAGAAAAAAAGAGAAGATGATGAGGAAGAAGA
AGGTAGCATTGTTAACGGCTCCACTACTGAAGACGAAGAGCAAACCAGATCAGGAGCCCCATGG
TTCAAAAAGCCACTAAGAAATACCTCAGTTGTAGACAGTGAGCCAGTGAGATTCACTGTGAAAG
TGACAGGAGAACCCAAGCCAGAAGTTACGTGGTGGTTTGAAGGAGAACTACTGCAGGATGGAGA
AGACTATCAGTACATCGAAAGAGGAGAAACTTACTGCCTGTATTTACCAGAAACTTTCCCCGAA
GATGGAGGAGAATATATGTGTAAAGCAGTCAACAGTAAAGGCTCAGCAGCGAGTACCTGTATTC
TTACCATTGAAATGGATGACTACTAGGCTTCCTTCTTTACTTGGATCTCACTCTCTCCAACTCT
CTTGATACATCTCTGAGGAGGGGCCAAAAAGGAGACCAGAGGCGCCACTCTGTTGACTTAATCT
TTTCCCACATCTTCCAAATAGCTCATCTAAAGAACACCATTTCCAATGCCTATCAGTTTTATTA
CCATGCTGTGCAAAGTCAAAATGCAGCTGACAGAAAAGGGAAATAAATGTACACATTCTGCCAT
AACCTAAAACAAAAGCTTTATATTTTCCCTATTTATAGCATAGTTTGCATGAATAGATTTTATA
ACTAGCCACTGATTGACAATTAAAGTGGAATGATTAGTAGATTTGAAAAATGCGATTTTGATTT
AAATTTCTAGCTTTAAAAATAAGTTTGTAAATGTCAAGTGTTGTGTTGCAGGCCTTAATCCCAG
CACACAGGAGGCAGCAAGGTCTACAGGGCAGCCAGAATTACATAGTTGAGACCCTGTTACCCTG
GTTCCTATAACAACACATGTCTGTAAATAAAAGCCTATTATGTTCTAATATTGGGTGGTTTTAT
ATTTAATTTTCTGGAAAACGTGTTGTGAAACCATAATAAAGTTACCTGTGCATTAAAAA

hide sequence

RefSeq Acc Id:

XM_006233480 ⟹ XP_006233542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,846,736 - 243,878,010 (-)	NCBI
mRatBN7.2	2	241,186,783 - 241,218,064 (-)	NCBI
Rnor_6.0	2	257,452,937 - 257,484,483 (-)	NCBI
Rnor_5.0	2	276,129,684 - 276,161,434 (-)	NCBI

Sequence:

show sequence

GGGGTAGCCTGCGCTCGGCGGGACCGGCCTGAGCTGCGGGGGTGGCGGGGGTCCCTCGCCAGGC
CCGGCGCTTCTGTTCCACCGGCATCTGGGCGCTGAATTTGGGGGAGAGTGTTTCCAGGTCGCCG
TATGAGTGTACACTCTCCGCCGGGACCCCTAGGGTCCGAGCGGGCGAGTTCACCGTGGCATCCA
ACATGTGCCCCACTGCGGGCTCCGCCGGCAGTGGCTGGGATTTTAAAGAAATTGCGGATGGGTC
CCCGTGGAAGGTGGAAAATAAGGGATTTATTAGCCTGCCAAGCTCGGTCTCCAAACTGCTCTCC
AACGGTACAAGAATATACAAGGCTTCAGTCTGAAACCACACATAGCAAACATGAATGACGTGTC
ACAGAAGGCAGAGATTCTGCTTTCTTCATCTAAACCTGTCCCCAAATCCTATGTGCCAAAACTC
GGCAAGGGAGATGTAAAGGATAAATTTGAAGCCATGCAGAGGGCCAGGGAAGAAAGAAATCAAA
GGCGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAAAGAGAATGGAACAG
GAGAAAGCAGGAGATTAAAGACATGCTCGCTTCTGATGAGGAAGAAGAGCCGTCTAAAGTAGAA
AAGGCTTATGTCCCAAAGCTCACAGGGACAGTTAAAGGCAAATTTGATGAAATGGAGAAACACA
GACAGGAAGAACAAAGGAAGAGAACAGAAGAGGAGAGAAAACGCAGAATTGAGCAGGATCTGTT
AGAAAAGAGGAAAATGCAGCGTGAATTAGCAAAAAGAGCTGAGCAGATTGAGGACATAAACAAT
ACGGGAACCGAGTCCGCATCAGAGGAAGGAGATGACTCACTCCTTATAACAGTGGTCCCTGCCA
AATCATACAGAGCAGCTGCAAACAGGAAGGATCCTGAGGACCTGGACAGAGAACACAGGAATGG
AAGGGTTAGTCAGGAAGAAGAAAAGACAAGACATGAAGAAGAGTGCAGAGCTCTCAAAGAAGCA
AAATGCCTTTCATTGGTCATGGATGATGAAACAGAGGCCAAAAAAGAATCACGTTTTCCTGGAA
AATTGAAATCAACTTTTGAAGAACTGGAACGACAAAGACAAGAAAACCGCAAGAAGCAAGCAGA
AGAGGAAGCAAGACGGCGCTTAGAAGAAGAGAGGCGTGCCTTTGAGGAAGCAAGGCGGAACATG
GTAAACGAGGAGGATGAAAGCCAAGACACAGAAACGGTTTTTAAAGAGTACCGCCCAGGAAAAC
TCCGACTCAGTTTTGAGGAAATAGAAAGGCAAAGGAGAGAAGAGGAAAAACGAAAGGCCGAGGA
GGAGGCGCGAAGGAGGATGGAGGAGGAGAAGAAGGCATTTGCTGAAGCCAGGAGAAGCATGGTA
TTAGATGATGATTCCCCAGAGATTTATAAAGCAGTCTCTCAAGAATCTCTAACGCCTGGAAAAC
TGGAAATTAATTTTGAACAATTATTAAGACAAAAAATGGAAGAAGAAAGACGACGAACAGAGGA
AGAACGGAGGCAAAAACTAGAAATGGAGAAACAGGAATTTGAACAACTGAGACAAGAAATGGGA
AAGGAAGAAGAAGAAAATGAAAGCTTTGGGTTGAGTAGAGAATATGAAGAATTAATTAAATTAA
AAAGGAGTGGTTCAATTCAAGCCAAAAATCTAAAAAGCAAGTTTGAAAAAATTGGACAGTTGTC
TGAAAAAGAAGTACAGAAAAAGATAGAAGAAGAGAGAGCAAAAAGGAGAGCAATTGACCTTGAA
ATTAAAGAGCGAGAAGCAGAAAACTTCCATGAGGATGATGATGTTGATGTAAAACCTGCAAAGA
AGAGTGAGTCTCCCTTTACTCACAAAGTGAACATGAAAGCCAGATTTGAACAAATGGCTAAGGC
AAGACAAGAAGAAGAGCAAAGGAGAATTGAAGAACAGAAGTTACTGCGGATGCAGTTTGAACAG
AAAGAAATCGATGCAGCACTTCAGAAAAAAAGAGAAGATGATGAGGAAGAAGAAGGTAGCATTG
TTAACGGCTCCACTACTGAAGACGAAGAGCAAACCAGATCAGGAGCCCCATGGTTCAAAAAGCC
ACTAAGAAATACCTCAGTTGTAGACAGTGAGCCAGTGAGATTCACTGTGAAAGTGACAGGAGAA
CCCAAGCCAGAAGTTACGTGGTGGTTTGAAGGAGAACTACTGCAGGATGGAGAAGACTATCAGT
ACATCGAAAGAGGAGAAACTTACTGCCTGTATTTACCAGAAACTTTCCCCGAAGATGGAGGAGA
ATATATGTGTAAAGCAGTCAACAGTAAAGGCTCAGCAGCGAGTACCTGTATTCTTACCATTGAA
ATGGATGACTACTAGGCTTCCTTCTTTACTTGGATCTCACTCTCTCCAACTCTCTTGATACATC
TCTGAGGAGGGGCCAAAAAGGAGACCAGAGGCGCCACTCTGTTGACTTAATCTTTTCCCACATC
TTCCAAATAGCTCATCTAAAGAACACCATTTCCAATGCCTATCAGTTTTATTACCATGCTGTGC
AAAGTCAAAATGCAGCTGACAGAAAAGGGAAATAAATGTACACATTCTGCCATAACCTAAAACA
AAAGCTTTATATTTTCCCTATTTATAGCATAGTTTGCATGAATAGATTTTATAACTAGCCACTG
ATTGACAATTAAAGTGGAATGATTAGTAGATTTGAAAAATGCGATTTTGATTTAAATTTCTAGC
TTTAAAAATAAGTTTGTAAATGTCAAGTGTTGTGTTGCAGGCCTTAATCCCAGCACACAGGAGG
CAGCAAGGTCTACAGGGCAGCCAGAATTACATAGTTGAGACCCTGTTACCCTGGTTCCTATAAC
AACACATGTCTGTAAATAAAAGCCTATTATGTTCTAATATTGGGTGGTTTTATATTTAATTTTC
TGGAAAACGTGTTGTGAAACCATAATAAAGTTACCTGTGCATTAAAAA

hide sequence

RefSeq Acc Id:

XM_006233485 ⟹ XP_006233547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,846,736 - 243,878,266 (-)	NCBI
mRatBN7.2	2	241,186,783 - 241,218,294 (-)	NCBI
Rnor_6.0	2	257,452,937 - 257,484,607 (-)	NCBI
Rnor_5.0	2	276,129,684 - 276,161,434 (-)	NCBI

Sequence:

show sequence

CGGGAGCGGCGGGGGCAGCGCGCAGAGCCGGACACGCAGCGCGGAGCGGGAGGAGCGGCGCCCC
GGCGGCGGCAGGCGGGTACAAGAATATACAAGGCTTCAGTCTGAAACCACACATAGCAAACATG
AATGACGTGTCACAGAAGGCAGAGATTAAAGACATGCTCGCTTCTGATGAGGAAGAAGAGCCGT
CTAAAGTAGAAAAGGCTTATGTCCCAAAGCTCACAGGGACAGTTAAAGGCAAATTTGATGAAAT
GGAGAAACACAGACAGGAAGAACAAAGGAAGAGAACAGAAGAGGAGAGAAAACGCAGAATTGAG
CAGGATCTGTTAGAAAAGAGGAAAATGCAGCGTGAATTAGCAAAAAGAGCTGAGCAGGAAGGAG
ATGACTCACTCCTTATAACAGTGGTCCCTGCCAAATCATACAGAGCAGCTGCAAACAGGAAGGA
TCCTGAGGACCTGGACAGAGAACACAGGAATGGAAGGGTTAGTCAGGAAGAAGAAAAGACAAGA
CATGAAGAAGAGTGCAGAGCTCTCAAAGAAGCAAAATGCCTTTCATTGGTCATGGATGATGAAA
CAGAGGCCAAAAAAGAATCACGTTTTCCTGGAAAATTGAAATCAACTTTTGAAGAACTGGAACG
ACAAAGACAAGAAAACCGCAAGAAGCAAGCAGAAGAGGAAGCAAGACGGCGCTTAGAAGAAGAG
AGGCGTGCCTTTGAGGAAGCAAGGCGGAACATGGTAAACGAGGAGGATGAAAGCCAAGACACAG
AAACGGTTTTTAAAGAGTACCGCCCAGGAAAACTCCGACTCAGTTTTGAGGAAATAGAAAGGCA
AAGGAGAGAAGAGGAAAAACGAAAGGCCGAGGAGGAGGCGCGAAGGAGGATGGAGGAGGAGAAG
AAGGCATTTGCTGAAGCCAGGAGAAGCATGGTATTAGATGATGATTCCCCAGAGATTTATAAAG
CAGTCTCTCAAGAATCTCTAACGCCTGGAAAACTGGAAATTAATTTTGAACAATTATTAAGACA
AAAAATGGAAGAAGAAAGACGACGAACAGAGGAAGAACGGAGGCAAAAACTAGAAATGGAGAAA
CAGGAATTTGAACAACTGAGACAAGAAATGGGAAAGGAAGAAGAAGAAAATGAAAGCTTTGGGT
TGAGTAGAGAATATGAAGAATTAATTAAATTAAAAAGGAGTGGTTCAATTCAAGCCAAAAATCT
AAAAAGCAAGTTTGAAAAAATTGGACAGTTGTCTGAAAAAGAAGTACAGAAAAAGATAGAAGAA
GAGAGAGCAAAAAGGAGAGCAATTGACCTTGAAATTAAAGAGCGAGAAGCAGAAAACTTCCATG
AGGATGATGATGTTGATGTAAAACCTGCAAAGAAGAGTGAGTCTCCCTTTACTCACAAAGTGAA
CATGAAAGCCAGATTTGAACAAATGGCTAAGGCAAGACAAGAAGAAGAGCAAAGGAGAATTGAA
GAACAGAAGTTACTGCGGATGCAGTTTGAACAGAAAGAAATCGATGCAGCACTTCAGAAAAAAA
GAGAAGATGATGAGGAAGAAGAAGGTAGCATTGTTAACGGCTCCACTACTGAAGACGAAGAGCA
AACCAGATCAGGAGCCCCATGGTTCAAAAAGCCACTAAGAAATACCTCAGTTGTAGACAGTGAG
CCAGTGAGATTCACTGTGAAAGTGACAGGAGAACCCAAGCCAGAAGTTACGTGGTGGTTTGAAG
GAGAACTACTGCAGGATGGAGAAGACTATCAGTACATCGAAAGAGGAGAAACTTACTGCCTGTA
TTTACCAGAAACTTTCCCCGAAGATGGAGGAGAATATATGTGTAAAGCAGTCAACAGTAAAGGC
TCAGCAGCGAGTACCTGTATTCTTACCATTGAAATGGATGACTACTAGGCTTCCTTCTTTACTT
GGATCTCACTCTCTCCAACTCTCTTGATACATCTCTGAGGAGGGGCCAAAAAGGAGACCAGAGG
CGCCACTCTGTTGACTTAATCTTTTCCCACATCTTCCAAATAGCTCATCTAAAGAACACCATTT
CCAATGCCTATCAGTTTTATTACCATGCTGTGCAAAGTCAAAATGCAGCTGACAGAAAAGGGAA
ATAAATGTACACATTCTGCCATAACCTAAAACAAAAGCTTTATATTTTCCCTATTTATAGCATA
GTTTGCATGAATAGATTTTATAACTAGCCACTGATTGACAATTAAAGTGGAATGATTAGTAGAT
TTGAAAAATGCGATTTTGATTTAAATTTCTAGCTTTAAAAATAAGTTTGTAAATGTCAAGTGTT
GTGTTGCAGGCCTTAATCCCAGCACACAGGAGGCAGCAAGGTCTACAGGGCAGCCAGAATTACA
TAGTTGAGACCCTGTTACCCTGGTTCCTATAACAACACATGTCTGTAAATAAAAGCCTATTATG
TTCTAATATTGGGTGGTTTTATATTTAATTTTCTGGAAAACGTGTTGTGAAACCATAATAAAGT
TACCTGTGCATTAAAAA

hide sequence

RefSeq Acc Id:

XM_039101726 ⟹ XP_038957654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,846,736 - 243,877,634 (-)	NCBI
mRatBN7.2	2	241,186,783 - 241,217,691 (-)	NCBI

RefSeq Acc Id:

XM_039101727 ⟹ XP_038957655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,846,736 - 243,878,078 (-)	NCBI
mRatBN7.2	2	241,186,783 - 241,218,064 (-)	NCBI

RefSeq Acc Id:

XM_063281296 ⟹ XP_063137366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,846,736 - 243,878,054 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_631976	(Get FASTA)	NCBI Sequence Viewer
	NP_631977	(Get FASTA)	NCBI Sequence Viewer
	XP_006233541	(Get FASTA)	NCBI Sequence Viewer
	XP_006233542	(Get FASTA)	NCBI Sequence Viewer
	XP_006233547	(Get FASTA)	NCBI Sequence Viewer
	XP_038957654	(Get FASTA)	NCBI Sequence Viewer
	XP_038957655	(Get FASTA)	NCBI Sequence Viewer
	XP_063137366	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC95128	(Get FASTA)	NCBI Sequence Viewer
	AAC95129	(Get FASTA)	NCBI Sequence Viewer
	ACH96580	(Get FASTA)	NCBI Sequence Viewer
	EDL82493	(Get FASTA)	NCBI Sequence Viewer
	EDL82494	(Get FASTA)	NCBI Sequence Viewer
	EDL82495	(Get FASTA)	NCBI Sequence Viewer
	EDL82496	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016968.6
	ENSRNOP00000058811
	ENSRNOP00000058811.3
	ENSRNOP00000073825.2
	ENSRNOP00000077161.1
	ENSRNOP00000080182
	ENSRNOP00000080182.1
	ENSRNOP00000082246.1
	ENSRNOP00000096571.1
GenBank Protein	Q9Z2J4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_631977 ⟸ NM_139231
- Peptide Label:	isoform s
- UniProtKB:	A6HWK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDVSQKAEIKDMLASDEEEEPSKVEKAYVPKLTGTVKGKFDEMEKHRQEEQRKRTEEERKRRI EQDLLEKRKMQRELAKRAEQIEDINNTGTESASEEGDDSLLITVVPAKSYRAAANRKDPEDLDR EHRNGRVSQEEEKTRHEEECRALKEAKCLSLVMDDETEAKKESRFPGKLKSTFEELERQRQENR KKQAEEEARRRLEEERRAFEEARRNMVNEEDESQDTETVFKEYRPGKLRLSFEEIERQRREEEK RKAEEEARRRMEEEKKAFAEARRSMVLDDDSPEIYKAVSQESLTPGKLEINFEQLLRQKMEEER RRTEEERRQKLEMEKQEFEQLRQEMGKEEEENESFGLSREYEELIKLKRSGSIQAKNLKSKFEK IGQLSEKEVQKKIEEERAKRRAIDLEIKEREAENFHEDDDVDVKPAKKSESPFTHKVNMKARFE QMAKARQEEEQRRIEEQKLLRMQFEQKEIDAALQKKREDDEEEEGSIVNGSTTEDEEQTRSGAP WFKKPLRNTSVVDSEPVRFTVKVTGEPKPEVTWWFEGELLQDGEDYQYIERGETYCLYLPETFP EDGGEYMCKAVNSKGSAASTCILTIEMDDY hide sequence

RefSeq Acc Id:	NP_631976 ⟸ NM_139230
- Peptide Label:	isoform b
- UniProtKB:	Q9Z2J3 (UniProtKB/Swiss-Prot), Q9Z2J4 (UniProtKB/Swiss-Prot), A6HWK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDVSQKAEILLSSSKPVPKSYVPKLGKGDVKDKFEAMQRAREERNQRRSRDEKQRRKEQYIRE REWNRRKQEIKDMLASDEEEEPSKVEKAYVPKLTGTVKGKFDEMEKHRQEEQRKRTEEERKRRI EQDLLEKRKMQRELAKRAEQEGDDSLLITVVPAKSYRAAANRKDPEDLDREHRNGRVSQEEEKT RHEEECRALKEAKCLSLVMDDETEAKKESRFPGKLKSTFEELERQRQENRKKQAEEEARRRLEE ERRAFEEARRNMVNEEDESQDTETVFKEYRPGKLRLSFEEIERQRREEEKRKAEEEARRRMEEE KKAFAEARRSMVLDDDSPEIYKAVSQESLTPGKLEINFEQLLRQKMEEERRRTEEERRQKLEME KQEFEQLRQEMGKEEEENESFGLSREYEELIKLKRSGSIQAKNLKSKFEKIGQLSEKEVQKKIE EERAKRRAIDLEIKEREAENFHEDDDVDVKPAKKSESPFTHKVNMKARFEQMAKARQEEEQRRI EEQKLLRMQFEQKEIDAALQKKREDDEEEEGSIVNGSTTEDEEQTRSGAPWFKKPLRNTSVVDS EPVRFTVKVTGEPKPEVTWWFEGELLQDGEDYQYIERGETYCLYLPETFPEDGGEYMCKAVNSK GSAASTCILTIEMDDY hide sequence

RefSeq Acc Id:	XP_006233541 ⟸ XM_006233479
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QTU4 (UniProtKB/TrEMBL), A0A8I5ZUL4 (UniProtKB/TrEMBL), A6HWK9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDVSQKAEILLSSSKPVPKSYVPKLGKGDVKDKFEAMQRAREERNQRRSRDEKQRRKEQYIRE REWNRRKQEIKDMLASDEEEEPSKVEKAYVPKLTGTVKGKFDEMEKHRQEEQRKRTEEERKRRI EQDLLEKRKMQRELAKRAEQIEDINNTGTESASEEGDDSLLITVVPAKSYRAAANRKDPEDLDR EHRNGRVSQEEEKTRHEEECRALKEAKCLSLVMDDETEAKKESRFPGKLKSTFEELERQRQENR KKQAEEEARRRLEEERRAFEEARRNMVNEEDESQDTETVFKEYRPGKLRLSFEEIERQRREEEK RKAEEEARRRMEEEKKAFAEARRSMVLDDDSPEIYKAVSQESLTPGKLEINFEQLLRQKMEEER RRTEEERRQKLEMEKQEFEQLRQEMGKEEEENESFGLSREYEELIKLKRSGSIQAKNLKSKFEK IGQLSEKEVQKKIEEERAKRRAIDLEIKEREAENFHEDDDVDVKPAKKSESPFTHKVNMKARFE QMAKARQEEEQRRIEEQKLLRMQFEQKEIDAALQKKREDDEEEEGSIVNGSTTEDEEQTRSGAP WFKKPLRNTSVVDSEPVRFTVKVTGEPKPEVTWWFEGELLQDGEDYQYIERGETYCLYLPETFP EDGGEYMCKAVNSKGSAASTCILTIEMDDY hide sequence

RefSeq Acc Id:	XP_006233547 ⟸ XM_006233485
- Peptide Label:	isoform X3
- UniProtKB:	A6HWK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDVSQKAEIKDMLASDEEEEPSKVEKAYVPKLTGTVKGKFDEMEKHRQEEQRKRTEEERKRRI EQDLLEKRKMQRELAKRAEQEGDDSLLITVVPAKSYRAAANRKDPEDLDREHRNGRVSQEEEKT RHEEECRALKEAKCLSLVMDDETEAKKESRFPGKLKSTFEELERQRQENRKKQAEEEARRRLEE ERRAFEEARRNMVNEEDESQDTETVFKEYRPGKLRLSFEEIERQRREEEKRKAEEEARRRMEEE KKAFAEARRSMVLDDDSPEIYKAVSQESLTPGKLEINFEQLLRQKMEEERRRTEEERRQKLEME KQEFEQLRQEMGKEEEENESFGLSREYEELIKLKRSGSIQAKNLKSKFEKIGQLSEKEVQKKIE EERAKRRAIDLEIKEREAENFHEDDDVDVKPAKKSESPFTHKVNMKARFEQMAKARQEEEQRRI EEQKLLRMQFEQKEIDAALQKKREDDEEEEGSIVNGSTTEDEEQTRSGAPWFKKPLRNTSVVDS EPVRFTVKVTGEPKPEVTWWFEGELLQDGEDYQYIERGETYCLYLPETFPEDGGEYMCKAVNSK GSAASTCILTIEMDDY hide sequence

RefSeq Acc Id:	XP_006233542 ⟸ XM_006233480
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QTU4 (UniProtKB/TrEMBL), A0A8I5ZUL4 (UniProtKB/TrEMBL), A6HWK9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDVSQKAEILLSSSKPVPKSYVPKLGKGDVKDKFEAMQRAREERNQRRSRDEKQRRKEQYIRE REWNRRKQEIKDMLASDEEEEPSKVEKAYVPKLTGTVKGKFDEMEKHRQEEQRKRTEEERKRRI EQDLLEKRKMQRELAKRAEQIEDINNTGTESASEEGDDSLLITVVPAKSYRAAANRKDPEDLDR EHRNGRVSQEEEKTRHEEECRALKEAKCLSLVMDDETEAKKESRFPGKLKSTFEELERQRQENR KKQAEEEARRRLEEERRAFEEARRNMVNEEDESQDTETVFKEYRPGKLRLSFEEIERQRREEEK RKAEEEARRRMEEEKKAFAEARRSMVLDDDSPEIYKAVSQESLTPGKLEINFEQLLRQKMEEER RRTEEERRQKLEMEKQEFEQLRQEMGKEEEENESFGLSREYEELIKLKRSGSIQAKNLKSKFEK IGQLSEKEVQKKIEEERAKRRAIDLEIKEREAENFHEDDDVDVKPAKKSESPFTHKVNMKARFE QMAKARQEEEQRRIEEQKLLRMQFEQKEIDAALQKKREDDEEEEGSIVNGSTTEDEEQTRSGAP WFKKPLRNTSVVDSEPVRFTVKVTGEPKPEVTWWFEGELLQDGEDYQYIERGETYCLYLPETFP EDGGEYMCKAVNSKGSAASTCILTIEMDDY hide sequence

RefSeq Acc Id:

ENSRNOP00000016968 ⟸ ENSRNOT00000016967

RefSeq Acc Id:

ENSRNOP00000073825 ⟸ ENSRNOT00000083344

RefSeq Acc Id:

ENSRNOP00000058811 ⟸ ENSRNOT00000066780

RefSeq Acc Id:	XP_038957655 ⟸ XM_039101727
- Peptide Label:	isoform X2
- UniProtKB:	A6HWK7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038957654 ⟸ XM_039101726
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QTU4 (UniProtKB/TrEMBL), A0A8I5ZUL4 (UniProtKB/TrEMBL), A6HWK9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000080182 ⟸ ENSRNOT00000099274

RefSeq Acc Id:

ENSRNOP00000082246 ⟸ ENSRNOT00000111795

RefSeq Acc Id:

ENSRNOP00000077161 ⟸ ENSRNOT00000110679

RefSeq Acc Id:

ENSRNOP00000096571 ⟸ ENSRNOT00000100634

RefSeq Acc Id:	XP_063137366 ⟸ XM_063281296
- Peptide Label:	isoform X3

Protein Domains

Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Z2J4-F1-model_v2	AlphaFold	Q9Z2J4	1-656	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691834

Promoter ID:

EPDNEW_R2350

Type:

single initiation site

Name:

Nexn_1

Description:

nexilin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	257,484,584 - 257,484,644	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708354	AgrOrtholog
BioCyc Gene	G2FUF-50805	BioCyc
Ensembl Genes	ENSRNOG00000012512	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016967.8	UniProtKB/TrEMBL
	ENSRNOT00000066780.3	UniProtKB/TrEMBL
	ENSRNOT00000083344.2	UniProtKB/TrEMBL
	ENSRNOT00000099274	ENTREZGENE
	ENSRNOT00000099274.1	UniProtKB/Swiss-Prot
	ENSRNOT00000100634.1	UniProtKB/TrEMBL
	ENSRNOT00000110679.1	UniProtKB/TrEMBL
	ENSRNOT00000111795.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_sub	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:246172	UniProtKB/Swiss-Prot
NCBI Gene	246172	ENTREZGENE
PANTHER	MITOGUARDIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MITOGUARDIN 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	I-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Nexn	PhenoGen
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012512	RatGTEx
SMART	SM00409	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K6I3_RAT	UniProtKB/TrEMBL
	A0A8I5ZJE5_RAT	UniProtKB/TrEMBL
	A0A8I5ZUL4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQU8_RAT	UniProtKB/TrEMBL
	A0A8L2Q8C7_RAT	UniProtKB/TrEMBL
	A0A8L2QTU4	ENTREZGENE, UniProtKB/TrEMBL
	A6HWK7	ENTREZGENE, UniProtKB/TrEMBL
	A6HWK8	ENTREZGENE, UniProtKB/TrEMBL
	A6HWK9	ENTREZGENE, UniProtKB/TrEMBL
	A6HWL0_RAT	UniProtKB/TrEMBL
	NEXN_RAT	UniProtKB/Swiss-Prot
	Q9Z2J3	ENTREZGENE
	Q9Z2J4	ENTREZGENE
UniProt Secondary	Q9Z2J3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-25	Nexn	nexilin (F actin binding protein)	Nexn	nexilin	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-12-14	Nexn	nexilin	LOC246172		Symbol updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_protein	big b-nexilin and small s-nexillin isoforms are products of nexillin splicing variants	1299387

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

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