Acsl5 (acyl-CoA synthetase long-chain family member 5) - Rat Genome Database

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Gene: Acsl5 (acyl-CoA synthetase long-chain family member 5) Mus musculus
Analyze
Symbol: Acsl5
Name: acyl-CoA synthetase long-chain family member 5
RGD ID: 69445
MGI Page MGI
Description: Enables long-chain fatty acid-CoA ligase activity. Involved in long-chain fatty acid metabolic process. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in congenital diarrhea. Orthologous to human ACSL5 (acyl-CoA synthetase long chain family member 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700030F05Rik; ACS2; ACS5; arachidonate--CoA ligase; Fac; Facl5; fatty acid Coenzyme A ligase, long chain 5; LACS 5; long-chain acyl-CoA synthetase 5; long-chain-fatty-acid--CoA ligase 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,240,298 - 55,285,060 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,240,370 - 55,286,152 (+)EnsemblGRCm39 Ensembl
GRCm381955,251,861 - 55,296,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,251,938 - 55,297,720 (+)EnsemblGRCm38mm10GRCm38
MGSCv371955,327,859 - 55,371,118 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,306,619 - 55,349,878 (+)NCBIMGSCv36mm8
Celera1957,444,332 - 57,487,767 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arotinoid acid  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
ATP  (ISO)
azathioprine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bexarotene  (ISO)
bezafibrate  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (ISO)
cadmium atom  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
CHIR 99021  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
cobalt dichloride  (EXP,ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
cortisol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diethylstilbestrol  (ISO)
dioscin  (EXP,ISO)
doxorubicin  (ISO)
ethanol  (EXP,ISO)
farnesol  (ISO)
fenofibrate  (EXP)
flutamide  (EXP,ISO)
folic acid  (EXP)
gamma-hexachlorocyclohexane  (ISO)
gentamycin  (ISO)
glyphosate  (EXP)
GW 4064  (ISO)
GW 7647  (ISO)
hexadecanoic acid  (ISO)
indometacin  (ISO)
isotretinoin  (ISO)
ketoconazole  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
levofloxacin  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
methamphetamine  (ISO)
methidathion  (EXP)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
O-methyleugenol  (ISO)
obeticholic acid  (ISO)
oleic acid  (ISO)
orphenadrine  (ISO)
oxaliplatin  (ISO)
oxybenzone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
picrotoxin  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
sodium arsenite  (EXP)
sotorasib  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
tolcapone  (ISO)
topotecan  (ISO)
trametinib  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
troglitazone  (ISO)
tunicamycin  (EXP)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
XAV939  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Searching QTL by gene expression: analysis of diabesity. Brown AC, etal., BMC Genet 2005 Mar 10;6(1):12.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Evidence for 26 distinct acyl-coenzyme A synthetase genes in the human genome. Watkins PA, etal., J Lipid Res. 2007 Dec;48(12):2736-50. Epub 2007 Aug 30.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12865426   PMID:14681479   PMID:15051725   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17197235   PMID:18188184   PMID:18614015   PMID:20562862   PMID:20657840   PMID:20660060   PMID:21267068   PMID:21873635   PMID:22633490   PMID:23767941   PMID:24194600   PMID:26977393  
PMID:27626380   PMID:28378742   PMID:30550785   PMID:31138677   PMID:32325033   PMID:32554809   PMID:34923175   PMID:35238380   PMID:36114006   PMID:36208627  


Genomics

Comparative Map Data
Acsl5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,240,298 - 55,285,060 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,240,370 - 55,286,152 (+)EnsemblGRCm39 Ensembl
GRCm381955,251,861 - 55,296,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,251,938 - 55,297,720 (+)EnsemblGRCm38mm10GRCm38
MGSCv371955,327,859 - 55,371,118 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,306,619 - 55,349,878 (+)NCBIMGSCv36mm8
Celera1957,444,332 - 57,487,767 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.3NCBI
ACSL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810112,374,116 - 112,428,376 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10112,374,116 - 112,428,379 (+)EnsemblGRCh38hg38GRCh38
GRCh3710114,133,874 - 114,188,134 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610114,123,906 - 114,178,128 (+)NCBINCBI36Build 36hg18NCBI36
Celera10107,861,444 - 107,915,662 (+)NCBICelera
Cytogenetic Map10q25.2NCBI
HuRef10107,761,898 - 107,815,784 (+)NCBIHuRef
CHM1_110114,415,634 - 114,469,870 (+)NCBICHM1_1
T2T-CHM13v2.010113,265,142 - 113,319,056 (+)NCBIT2T-CHM13v2.0
Acsl5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81264,294,851 - 264,341,943 (+)NCBIGRCr8
mRatBN7.21254,289,513 - 254,336,608 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1254,292,521 - 254,336,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1262,494,531 - 262,541,592 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01269,200,609 - 269,247,672 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01261,848,340 - 261,895,280 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01276,240,703 - 276,290,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1276,240,703 - 276,290,008 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01283,637,899 - 283,685,361 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,554,383 - 261,599,373 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11261,765,427 - 261,810,418 (+)NCBI
Celera1249,999,118 - 250,043,312 (+)NCBICelera
Cytogenetic Map1q55NCBI
Acsl5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543117,477,086 - 17,524,539 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543117,477,113 - 17,524,539 (+)NCBIChiLan1.0ChiLan1.0
ACSL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28124,252,488 - 124,305,741 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110124,257,822 - 124,307,922 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010108,965,559 - 109,019,240 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110112,405,069 - 112,457,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10112,407,161 - 112,457,892 (+)Ensemblpanpan1.1panPan2
ACSL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12823,437,838 - 23,478,763 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2823,440,387 - 23,478,762 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2823,589,635 - 23,630,543 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02823,970,117 - 24,011,237 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2823,971,931 - 24,069,062 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12823,527,397 - 23,568,302 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02823,538,540 - 23,579,462 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02823,737,237 - 23,775,914 (+)NCBIUU_Cfam_GSD_1.0
Acsl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721322,569,123 - 22,610,342 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364862,967,522 - 2,991,154 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364862,952,379 - 2,992,148 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14122,777,130 - 122,828,052 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114122,777,135 - 122,828,054 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214133,689,844 - 133,751,494 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACSL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19105,259,546 - 105,311,500 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9105,257,429 - 105,311,690 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604866,462,251 - 66,514,618 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acsl5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473734,038,518 - 34,091,661 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473734,038,610 - 34,091,579 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Acsl5
1530 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:99
Interacting mature miRNAs:106
Transcripts:ENSMUST00000043150
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
1300585Pgia12_mproteoglycan induced arthritis 12 (mouse)Not determined194258685961420004Mouse
11667075Led3_mlate embryonic death 3 (mouse)195108837859123872Mouse

Markers in Region
Acsl5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371955,365,651 - 55,365,923UniSTSGRCm37
Celera1957,482,300 - 57,482,572UniSTS
Cytogenetic Map19D2UniSTS
cM Map19 UniSTS
Acsl5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381955,291,161 - 55,291,433UniSTSGRCm38
MGSCv371955,365,651 - 55,365,923UniSTSGRCm37
Celera1957,482,300 - 57,482,572UniSTS
Cytogenetic Map19D2UniSTS
cM Map19 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_027976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI838021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB881665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC939074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000043150   ⟹   ENSMUSP00000046585
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,241,801 - 55,286,152 (+)Ensembl
GRCm38.p6 Ensembl1955,253,369 - 55,297,720 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224337   ⟹   ENSMUSP00000153474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,240,392 - 55,268,886 (+)Ensembl
GRCm38.p6 Ensembl1955,251,960 - 55,280,454 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224414   ⟹   ENSMUSP00000152972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,282,659 - 55,284,110 (+)Ensembl
GRCm38.p6 Ensembl1955,294,227 - 55,295,678 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225454   ⟹   ENSMUSP00000152956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,261,302 - 55,266,871 (+)Ensembl
GRCm38.p6 Ensembl1955,272,870 - 55,278,439 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225551   ⟹   ENSMUSP00000153302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,240,370 - 55,266,534 (+)Ensembl
GRCm38.p6 Ensembl1955,251,938 - 55,278,102 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1955,272,766 - 55,277,255 (+)Ensembl
GRCm38.p6 Ensembl1955,284,334 - 55,288,823 (+)Ensembl
RefSeq Acc Id: NM_027976   ⟹   NP_082252
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,241,801 - 55,285,060 (+)NCBI
GRCm381955,253,369 - 55,296,628 (+)NCBI
MGSCv371955,327,859 - 55,371,118 (+)RGD
Celera1957,444,332 - 57,487,767 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527178   ⟹   XP_006527241
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391955,240,298 - 55,285,060 (+)NCBI
GRCm381955,251,861 - 55,296,628 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_082252   ⟸   NM_027976
- UniProtKB: Q8JZR0 (UniProtKB/Swiss-Prot),   Q3UC67 (UniProtKB/TrEMBL),   Q3UKS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527241   ⟸   XM_006527178
- Peptide Label: isoform X1
- UniProtKB: Q8JZR0 (UniProtKB/Swiss-Prot),   Q3UC67 (UniProtKB/TrEMBL),   Q3UKS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000152956   ⟸   ENSMUST00000225454
RefSeq Acc Id: ENSMUSP00000153302   ⟸   ENSMUST00000225551
RefSeq Acc Id: ENSMUSP00000152972   ⟸   ENSMUST00000224414
RefSeq Acc Id: ENSMUSP00000153474   ⟸   ENSMUST00000224337
RefSeq Acc Id: ENSMUSP00000046585   ⟸   ENSMUST00000043150
Protein Domains
AMP-dependent synthetase/ligase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8JZR0-F1-model_v2 AlphaFold Q8JZR0 1-683 view protein structure

Promoters
RGD ID:13679812
Promoter ID:EPDNEW_M24055
Type:initiation region
Name:Acsl5_1
Description:Mus musculus acyl-CoA synthetase long-chain family member 5 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381955,253,920 - 55,253,980EPDNEW
RGD ID:6847531
Promoter ID:MM_ACW:27164
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ACSL5.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361955,326,236 - 55,326,736 (+)MPROMDB
RGD ID:6829766
Promoter ID:MM_KWN:27375
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_027976
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361955,328,066 - 55,328,617 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919129 AgrOrtholog
Ensembl Genes ENSMUSG00000024981 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043150 ENTREZGENE
  ENSMUST00000043150.6 UniProtKB/Swiss-Prot
  ENSMUST00000224337.2 UniProtKB/TrEMBL
  ENSMUST00000224414.2 UniProtKB/TrEMBL
  ENSMUST00000225454.2 UniProtKB/TrEMBL
  ENSMUST00000225551.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.12780 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AMP-binding_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-dep_Synthh-like_sf UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  LC-FACS_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:433256 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1919129 ENTREZGENE
NCBI Gene 433256 ENTREZGENE
PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LONG-CHAIN-FATTY-ACID--COA LIGASE 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Acsl5 PhenoGen
PROSITE AMP_BINDING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286YCF3_MOUSE UniProtKB/TrEMBL
  A0A286YCG4_MOUSE UniProtKB/TrEMBL
  A0A286YD68_MOUSE UniProtKB/TrEMBL
  A0A286YE29_MOUSE UniProtKB/TrEMBL
  ACSL5_MOUSE UniProtKB/Swiss-Prot
  Q3UC67 ENTREZGENE, UniProtKB/TrEMBL
  Q3UKS0 ENTREZGENE, UniProtKB/TrEMBL
  Q8JZR0 ENTREZGENE
  Q9D9S0_MOUSE UniProtKB/TrEMBL