Gene: Scn9a (sodium voltage-gated channel alpha subunit 9) Rattus norvegicus
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Symbol: Scn9a
Name: sodium voltage-gated channel alpha subunit 9
Description: ENCODES a protein that exhibits sodium ion binding; voltage-gated sodium channel activity; INVOLVED IN neuronal action potential; behavioral response to pain (ortholog); inflammatory response (ortholog); ASSOCIATED WITH Chronic Pain (ortholog); Dravet syndrome (ortholog); early myoclonic encephalopathy (ortholog); FOUND IN voltage-gated sodium channel complex; integral component of plasma membrane (ortholog); INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; benzo[a]pyrene
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Nav1.7; peripheral sodium channel 1; PN1; Scn2a; sodium channel protein type 9 subunit alpha; sodium channel protein type IX subunit alpha; sodium channel type IX alpha polypeptide; sodium channel voltage-gated type IX alpha polypeptide; sodium channel, voltage-gated, type 9, alpha polypeptide; sodium channel, voltage-gated, type IX, alpha; sodium channel, voltage-gated, type IX, alpha polypeptide; sodium channel, voltage-gated, type IX, alpha subunit; voltage-gated sodium channel subunit alpha Nav1.7
Orthologs:
Homo sapiens (human) : SCN9A (sodium voltage-gated channel alpha subunit 9)  HGNC
Mus musculus (house mouse) : Scn9a (sodium channel, voltage-gated, type IX, alpha)  MGI
Chinchilla lanigera (long-tailed chinchilla) : Scn9a (sodium voltage-gated channel alpha subunit 9)
Pan paniscus (bonobo/pygmy chimpanzee) : SCN9A (sodium voltage-gated channel alpha subunit 9)
Canis lupus familiaris (dog) : SCN9A (sodium voltage-gated channel alpha subunit 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Scn9a (sodium voltage-gated channel alpha subunit 9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0352,583,953 - 52,664,209 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0359,207,264 - 59,286,961 (-)NCBIRnor5.0rn5Rnor5.0
RGSC_v3.4348,438,725 - 48,518,893NCBIRGSC3.4rn4RGSC3.4
Celera350,729,098 - 50,808,151 (-)NCBI
Cytogenetic Map3q21NCBImapview
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Scn9a
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
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RGD Object Information
RGD ID: 69368
Created: 2001-11-14
Species: Rattus norvegicus
Last Modified: 2017-08-08
Status: ACTIVE