Ogfr (opioid growth factor receptor) - Rat Genome Database

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Gene: Ogfr (opioid growth factor receptor) Rattus norvegicus
Analyze
Symbol: Ogfr
Name: opioid growth factor receptor
RGD ID: 69324
Description: Predicted to enable opioid growth factor receptor activity. Predicted to be located in membrane; nucleus; and perinuclear region of cytoplasm. Orthologous to human OGFR (opioid growth factor receptor); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC124590; zeta-type opioid receptor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,080,743 - 188,087,028 (+)NCBIGRCr8
mRatBN7.23167,703,173 - 167,709,459 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,702,695 - 167,709,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,083,259 - 172,089,685 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,042,350 - 181,048,776 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,704,098 - 177,710,383 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,093,662 - 176,099,949 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,930,505 - 176,099,987 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,794,351 - 179,800,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,679,742 - 169,686,048 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,585,777 - 169,592,086 (+)NCBI
Celera3164,873,084 - 164,879,360 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bortezomib  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
ivermectin  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
naltrexone  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone enanthate  (ISO)
triadimefon  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
6. Cloning, sequencing, expression and function of a cDNA encoding a receptor for the opioid growth factor, enkephalin. Zagon IS, etal., Brain Res 1999 Dec 4;849(1-2):147-54.
Additional References at PubMed
PMID:11890982   PMID:12477932   PMID:12650964   PMID:15121239   PMID:16641100   PMID:30931654   PMID:32640891  


Genomics

Comparative Map Data
Ogfr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,080,743 - 188,087,028 (+)NCBIGRCr8
mRatBN7.23167,703,173 - 167,709,459 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,702,695 - 167,709,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,083,259 - 172,089,685 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,042,350 - 181,048,776 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,704,098 - 177,710,383 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,093,662 - 176,099,949 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,930,505 - 176,099,987 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,794,351 - 179,800,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,679,742 - 169,686,048 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,585,777 - 169,592,086 (+)NCBI
Celera3164,873,084 - 164,879,360 (-)NCBICelera
Cytogenetic Map3q43NCBI
OGFR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,804,835 - 62,814,000 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,804,835 - 62,814,000 (+)EnsemblGRCh38hg38GRCh38
GRCh372061,436,187 - 61,445,352 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,906,622 - 60,915,797 (+)NCBINCBI36Build 36hg18NCBI36
Build 342060,906,621 - 60,915,796NCBI
Celera2058,111,807 - 58,120,974 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,154,256 - 58,163,417 (+)NCBIHuRef
CHM1_12061,337,230 - 61,346,422 (+)NCBICHM1_1
T2T-CHM13v2.02064,603,807 - 64,612,957 (+)NCBIT2T-CHM13v2.0
Ogfr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,231,200 - 180,237,630 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,231,038 - 180,237,629 (+)EnsemblGRCm39 Ensembl
GRCm382180,589,407 - 180,595,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,589,245 - 180,595,836 (+)EnsemblGRCm38mm10GRCm38
MGSCv372180,324,112 - 180,330,542 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,518,869 - 180,525,239 (+)NCBIMGSCv36mm8
Celera2184,675,271 - 184,681,670 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.13NCBI
Ogfr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,310,712 - 1,317,693 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,310,394 - 1,316,748 (-)NCBIChiLan1.0ChiLan1.0
OGFR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,592,030 - 68,601,387 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,585,145 - 68,594,507 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,191,791 - 59,201,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,486,874 - 60,495,228 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,488,962 - 60,495,228 (+)Ensemblpanpan1.1panPan2
OGFR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,640,702 - 46,650,485 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,827,719 - 45,834,925 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,516,083 - 47,523,292 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,518,430 - 47,522,998 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,613,802 - 46,621,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,737,089 - 46,744,291 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,493,111 - 47,500,318 (+)NCBIUU_Cfam_GSD_1.0
Ogfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,857,040 - 194,864,410 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493651410,308,041 - 10,318,053 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OGFR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,065,456 - 62,072,950 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,065,483 - 62,072,950 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
OGFR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,414,947 - 1,423,789 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21,413,554 - 1,423,934 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605049,269,100 - 49,278,013 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ogfr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,579,488 - 28,587,994 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,576,876 - 28,588,315 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ogfr
27 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:320
Count of miRNA genes:179
Interacting mature miRNAs:207
Transcripts:ENSRNOT00000012611
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat

Markers in Region
AI044795  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23167,708,162 - 167,708,346 (+)MAPPERmRatBN7.2
Rnor_6.03176,098,653 - 176,098,836NCBIRnor6.0
Rnor_5.03179,799,342 - 179,799,525UniSTSRnor5.0
RGSC_v3.43169,684,752 - 169,684,935UniSTSRGSC3.4
Celera3164,874,224 - 164,874,407UniSTS
RH 3.4 Map31526.8UniSTS
Cytogenetic Map3q43UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 57 41 19 41 4 7 74 35 40 11 4
Low 7 4 4 1 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000012611   ⟹   ENSRNOP00000012612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,703,163 - 167,709,457 (+)Ensembl
Rnor_6.0 Ensembl3175,930,505 - 176,099,949 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086541   ⟹   ENSRNOP00000073386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,702,695 - 167,709,459 (+)Ensembl
Rnor_6.0 Ensembl3176,093,640 - 176,099,987 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094884   ⟹   ENSRNOP00000094532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,702,862 - 167,709,473 (+)Ensembl
RefSeq Acc Id: NM_053340   ⟹   NP_445792
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83188,080,743 - 188,087,028 (+)NCBI
mRatBN7.23167,703,173 - 167,709,459 (+)NCBI
Rnor_6.03176,093,662 - 176,099,949 (+)NCBI
Rnor_5.03179,794,351 - 179,800,638 (+)NCBI
RGSC_v3.43169,679,742 - 169,686,048 (+)RGD
Celera3164,873,084 - 164,879,360 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_445792 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI01899 (Get FASTA)   NCBI Sequence Viewer  
  EDL88798 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012612.3
  ENSRNOP00000073386
  ENSRNOP00000073386.2
  ENSRNOP00000094532.1
GenBank Protein Q9QXY4 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_445792   ⟸   NM_053340
- UniProtKB: Q9QXY4 (UniProtKB/Swiss-Prot),   Q3MID9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012612   ⟸   ENSRNOT00000012611
RefSeq Acc Id: ENSRNOP00000073386   ⟸   ENSRNOT00000086541
RefSeq Acc Id: ENSRNOP00000094532   ⟸   ENSRNOT00000094884
Protein Domains
Opioid growth factor receptor (OGFr) conserved

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QXY4-F1-model_v2 AlphaFold Q9QXY4 1-580 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692738
Promoter ID:EPDNEW_R3263
Type:multiple initiation site
Name:Ogfr_1
Description:opioid growth factor receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03176,093,652 - 176,093,712EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69324 AgrOrtholog
BioCyc Gene G2FUF-46327 BioCyc
Ensembl Genes ENSRNOG00000009355 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012611.6 UniProtKB/TrEMBL
  ENSRNOT00000086541 ENTREZGENE
  ENSRNOT00000086541.2 UniProtKB/TrEMBL
  ENSRNOT00000094884.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7932932 IMAGE-MGC_LOAD
InterPro OGF_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OGFr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:83525 UniProtKB/TrEMBL
MGC_CLONE MGC:124590 IMAGE-MGC_LOAD
NCBI Gene 83525 ENTREZGENE
PANTHER OPIOID GROWTH FACTOR RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14015 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam OGFr_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ogfr PhenoGen
RatGTEx ENSRNOG00000009355 RatGTEx
TIGR TC218100
UniProt A0A0G2K5D6_RAT UniProtKB/TrEMBL
  A0A8I6AME6_RAT UniProtKB/TrEMBL
  A6KM90_RAT UniProtKB/TrEMBL
  F7EPP7_RAT UniProtKB/TrEMBL
  OGFR_RAT UniProtKB/Swiss-Prot
  Q3MID9 ENTREZGENE, UniProtKB/TrEMBL
  Q9QXY4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Ogfr  opioid growth factor receptor      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 580 amino acids 68820