Kcnj11<sup>em5Mcwi</sup> (potassium inwardly rectifying channel, subfamily J, member 11; zinc finger nuclease induced mutant 5, Medical College of Wisconsin) - Rat Genome Database

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Gene: Kcnj11em5Mcwi (potassium inwardly rectifying channel, subfamily J, member 11; zinc finger nuclease induced mutant 5, Medical College of Wisconsin) Rattus norvegicus
Analyze
Symbol: Kcnj11em5Mcwi
Name: potassium inwardly rectifying channel, subfamily J, member 11; zinc finger nuclease induced mutant 5, Medical College of Wisconsin
RGD ID: 6893379
Description: This allele was made by ZFN mutagenesis. The resulting allele is a 8-bp deletion in exon 1 (del 311-318)
Type: allele  of Kcnj11  
Previously known as: Kcnj11^[em5Mcwi]; Kcnj11em5Mcwi
Is Marker For: Strains:   SS-Kcnj11em5Mcwi  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Cytogenetic Map1 RGD


References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains

Genomics

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Kcnj11em5Mcwi-var1 chr1 102103094 102106127 CAGTGTAAAAACATCTTTTTTTTTTTTGTCTTAGGTTTAGTTTTCCCATCACATGGCTAGCTCAGCAGCGATCACGACGGTTGACATTTATTGAGCACTTGTGTACAGACCAGGCACTTCCGAAGCAAGTATACATGTGTTTTCACCTGCTCAACCTAATGAGGTAGGGACTATTAACATGGGCGAGACAACCGGGTCACAGGGTGGTTCAGCTGGAGCCAGGATTTGAGCCAATCAATACCCCTGAGGCCTACAGCCTCCCTCCCCCTCCCCATGGGCACCTCAGCCTTCCAGCAGAGTCAGGAGACAGCCCAGGCCCTTGACTATGATGTCTGGTGGATGTCAAATGGTGGAGTTGGCCAGACAGACTGAGAGTGGGGGGGGGGTGGAACCTGAGGTGGAAGGATGATGGCCTCCTGAGGTGAGGGAAACGGAGGAGCTAGTCTAAGTAGCTTTTCTGGCCTCTTGCCTGCCGGGCCATGCTAGGTGGCAGACTCTGACAGTGCCTTTTCCCCCCAGTGGCATGCCCACTGCCTCCCCAGCAAGAAAAGCCCAGAGTTCAGGTCACAGATGGGAGGCTTTATTGACGACGGGCCAGTGGGGTTCTGGGCGAGGACACTACACTGCTCTGAGAGTCCGGGCTCAGGTCAAGCCCAAGGGCCTTTTGCCTTGGAGACCTCCCTTTCCCTCACCAGGGTGAACTTTCCAATATTTCTTTTTCTGACAACCTAGACAAGGCATTGCTACCCACCAGTGTCCCCCAGACAAAGTGACAGCTGCCCATGGGGAGCCAAGAGCAGAGTTTTGCCTGAAGTAGATCTTGTATGGCACTCACAGGACCCTTTTCGGCCTCTCAGCCAGGTATCTCAGTGTTTGCCCAATGCCCCACTTCCCAGCCTCTCCGGGGGACAAAACAGGGCAGCAGTCCCCACTCTCTCTGCAGAAGGCTGGAGTCAAGGGTAGAGGACAGAGACACGCGTCTGAACGGGACCATCAAGGTCTCCAATCATTTGCCTCCTTCTTGTCCCCCTTTCTCTCATAAGCCGGCCATATGGAGGAGAGCCTAGGTAAACTTATCCTGTCGTGGCTGTGTGGGCCCCTCAGCTCCCACGCTCTGACACCCACCTCCTCCCTGGCTGGCAGGATTCTTTAGCGTGGCACGAACAGGGCTGGGGCCTGGCCAGGTATTTCTTAGTGGCTACAGAAACAGCAATAGGCTCCCAACTTGGGGGCTGCTTTTGCCCAATTACCTGCCTGCTTGTGGCAGGATGAATCGTGGAGGACCAAGACTGGCTTCCTTCCAGACCTTAGCTTTAGGACCCCTGAACCTTCTATAGCCTCCCCATCGTTGGGCAGGGACATAGGGTAAGCCAGTCCTGAGCTGAGCCCGGGAGGAGCAGGAACAAAAATAACCCGGTACAGGCTCCTGCTGGGGCCAGAAATAGCATAGTGACAAGTATCTTGTAACACCCCAGGCACACAGCGGCGGGGAGGCTGAGCCAAGGAGGGTCTTGTCCCACGCCAGACCCTCATCTGGCCGAGGGGCTCGCACCCCAGCACTCTACATACCGTACTTCACTTTCCATGTGCCCACCTAAGTGAGTGGGGGCCTGAGGGACCGCAACTCAGGACAAGGAATCCGGAGAGATGCTAAACTTGGGCTTGGCCTTTGCCACAGCCACACTGCGCTTGCGCAGGGGCCCTCGCGACGAGGCGAGGGTCAGGGCATCCAGCAGGCTGCGGTCCTCATCAAGCTGGCGGGCTGTGCAGAGTGGTGTGGGCACTTTAACGGTGTTCCCGAATTTGGAGTAGTCCACAGAATAGCGGCCATCCTCCTCGGCCACGATGGGGACAAAACGCTGCCCCCACAGAATCTCGTCAGCCAGATAGGAGGTGCGGGCCTGGGTGGTAATGCCTGTGGTTTCTACCACACCTTCCAAGATGACAATGATCTCCAGGTCCTGGTGGTGGTGCAGGTCACTAGGAGCCAGGTCGTAGAGCGGGCTGTTGGAGTCGATGACGTGGTAGATGATGAGTGGGGCCACCAGAAAGATGCTGTTACCACCCACACCGTTCTCCATGGGGATGTCCACCTGGTGGAGAGGCACAACCTCGCCCTCCGGGCTGGTGGTCTTGCGCACCACCTGCATATGAATGGTGGCGCTAATGATCATGCTTTTTCGGAGGTCCCCTACGCGAAGCATGAAGCACAGGCGGCCATGTCGCAGGGTGATCACGGCATGCTTGCTGAAGATGAGGGTTTCTGCCCGCCGATGGGCCTGTGCCGTTTTCATGAAGATGCAGCCCAGCATGATGGCGTTGATCATTAGCCCTACGATATTCTGCACGATCAGAATAAGGATGGCCAGGGGACATTCCTCTGTCACCATGCGCCCGCCGAAACCAATGGTCACCTGGACCTCGATGGAGAAAAGGAAGGCAGACGAAAAGGAGTGGATGCTTGTGACGCAGGGCACATTGGTGCCCTCTCCGGGGGCCAAGTCACCGTGGGCAAAGGCGATGAGCCACCAGACCATGGCGAAGAGCAGCCAGCTGCACAGGAAGGACATGGTGAAAATGAGCAGCGTGTGGGGCCACTTGAGGTCCACCAGCGTGGTGAACACATCTTGCAGGAAGCGGCCCTGCTCTCGGATGTTCTTGTGGGCGACGTTGCAGTTGCCTTTCTTGGACACGAAGCGGGCCCTCCTCTCCCGAGTACGGTACCTGGGCTCTGTAGGGTCCTCTGCCAGCCGGGTCAGCACATATTCCTCAGGGATAATGCCCTTTCGGGACAGCATGGCTCCGTTGGCCCCAGGAAGGGGTTTCCCCCATGGGGGAGGCACTACACTGGCTTGGCCTAGGGCCTCTTTGTAGGGTCCCCCTCTCTGAGCCCTCTCCTCAAGCTTGCACCAACCTCTGGACTGATATGCCCCCCAGCTGGTTCTGTTTCTTTTTATACTAGCTTCAGATGCCGACGCCCCCTGCTCATTGCTTACTGAGCCCCTGACCCAGCCTGTACTCTACCTGGCCCTGG - deletion Rnor_6.0

Related Rat Strains
The following Strains have been annotated to Kcnj11em5Mcwi
SS-Kcnj11em5Mcwi    


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information