Clip1 (CAP-GLY domain containing linker protein 1) - Rat Genome Database

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Gene: Clip1 (CAP-GLY domain containing linker protein 1) Rattus norvegicus
Analyze
Symbol: Clip1
Name: CAP-GLY domain containing linker protein 1
RGD ID: 67404
Description: Enables microtubule plus-end binding activity. Involved in positive regulation of dendrite development. Located in cytoplasmic microtubule and microtubule plus-end. Orthologous to human CLIP1 (CAP-Gly domain containing linker protein 1); PARTICIPATES IN mTOR signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CAP-Gly domain-containing linker protein 1; CLIP-170; cytoplasmic linker protein 170; MGC114234; restin; restin (Reed-Steinberg cell-espressed intermediate filament-associated protein); Restin (Reed-Steinberg cell-expressed intermediate filament-associated protein); Rsn
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,571,533 - 38,678,779 (+)NCBIGRCr8
mRatBN7.21232,910,932 - 33,017,891 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1234,089,446 - 34,195,369 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,700,796 - 34,806,723 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,752,676 - 33,858,611 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,345,203 - 38,452,650 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,345,456 - 38,452,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,226,364 - 40,333,749 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,049,773 - 34,155,531 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,913,160 - 34,018,914 (+)NCBI
Celera1234,596,440 - 34,702,275 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4-amino-2,6-dinitrotoluene  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
cannabidiol  (ISO)
chloroprene  (EXP,ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
clorgyline  (ISO)
cobalt dichloride  (EXP)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gallic acid  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
menadione  (ISO)
methamphetamine  (EXP,ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetrahydropalmatine  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Clasps are CLIP-115 and -170 associating proteins involved in the regional regulation of microtubule dynamics in motile fibroblasts. Akhmanova A, etal., Cell 2001 Mar 23;104(6):923-35.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Phosphorylation of CLIP-170 by Plk1 and CK2 promotes timely formation of kinetochore-microtubule attachments. Li H, etal., EMBO J. 2010 Sep 1;29(17):2953-65. doi: 10.1038/emboj.2010.174. Epub 2010 Jul 27.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. alpha-Tubulin Tyrosination and CLIP-170 Phosphorylation Regulate the Initiation of Dynein-Driven Transport in Neurons. Nirschl JJ, etal., Cell Rep. 2016 Mar 22;14(11):2637-52. doi: 10.1016/j.celrep.2016.02.046. Epub 2016 Mar 10.
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. CLIP-170 and IQGAP1 cooperatively regulate dendrite morphology. Swiech L, etal., J Neurosci. 2011 Mar 23;31(12):4555-68. doi: 10.1523/JNEUROSCI.6582-10.2011.
13. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:12433698   PMID:12477932   PMID:15262990   PMID:16148041   PMID:16247022   PMID:16954346   PMID:17828275   PMID:17828277   PMID:17889670   PMID:18511518   PMID:18854161   PMID:19004523  
PMID:19687009   PMID:21273437   PMID:21399614   PMID:26506308  


Genomics

Comparative Map Data
Clip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,571,533 - 38,678,779 (+)NCBIGRCr8
mRatBN7.21232,910,932 - 33,017,891 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1234,089,446 - 34,195,369 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,700,796 - 34,806,723 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,752,676 - 33,858,611 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,345,203 - 38,452,650 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,345,456 - 38,452,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,226,364 - 40,333,749 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,049,773 - 34,155,531 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,913,160 - 34,018,914 (+)NCBI
Celera1234,596,440 - 34,702,275 (+)NCBICelera
Cytogenetic Map12q16NCBI
CLIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,271,469 - 122,422,956 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,271,432 - 122,422,669 (-)EnsemblGRCh38hg38GRCh38
GRCh3712122,756,016 - 122,907,216 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,321,934 - 121,473,069 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412121,280,860 - 121,431,996NCBI
Celera12122,346,248 - 122,498,975 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12119,716,905 - 119,868,164 (-)NCBIHuRef
CHM1_112122,724,274 - 122,875,405 (-)NCBICHM1_1
T2T-CHM13v2.012122,267,259 - 122,418,870 (-)NCBIT2T-CHM13v2.0
Clip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,715,857 - 123,822,527 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5123,715,858 - 123,822,681 (-)EnsemblGRCm39 Ensembl
GRCm385123,577,794 - 123,684,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,577,795 - 123,684,618 (-)EnsemblGRCm38mm10GRCm38
MGSCv375124,029,079 - 124,134,300 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365123,839,688 - 123,944,915 (-)NCBIMGSCv36mm8
Celera5120,653,293 - 120,732,591 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.06NCBI
Clip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554826,244,752 - 6,330,978 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554826,213,363 - 6,330,601 (+)NCBIChiLan1.0ChiLan1.0
CLIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210130,362,430 - 130,513,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112130,358,805 - 130,509,914 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012119,873,105 - 120,024,222 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112123,241,049 - 123,392,069 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12123,242,489 - 123,348,540 (-)Ensemblpanpan1.1panPan2
CLIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,979,685 - 7,087,914 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,996,340 - 7,087,731 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha267,123,914 - 7,248,095 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0267,215,194 - 7,339,394 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,215,176 - 7,339,393 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,145,842 - 7,271,532 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,238,425 - 7,362,525 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0267,193,979 - 7,318,170 (+)NCBIUU_Cfam_GSD_1.0
Clip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,254,519 - 157,369,858 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365582,137,392 - 2,224,878 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365582,109,569 - 2,224,907 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,320,958 - 30,467,657 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11430,320,870 - 30,467,095 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21432,126,533 - 32,195,050 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111117,621,047 - 117,775,717 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11117,620,949 - 117,729,506 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037127,581,928 - 127,709,244 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,481,196 - 22,598,038 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474722,481,304 - 22,596,779 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Clip1
775 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:53
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000001685
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)122806443340130419Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)122806455740218380Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)122860752637691617Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat

Markers in Region
D12Rat30  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21232,974,036 - 32,974,238 (+)MAPPERmRatBN7.2
Rnor_6.01238,408,800 - 38,409,001NCBIRnor6.0
Rnor_5.01240,289,899 - 40,290,100UniSTSRnor5.0
RGSC_v3.41234,112,589 - 34,112,949RGDRGSC3.4
RGSC_v3.41234,112,682 - 34,112,883UniSTSRGSC3.4
RGSC_v3.11233,976,070 - 33,976,271RGD
Celera1234,659,399 - 34,659,602UniSTS
RH 3.4 Map12585.8UniSTS
RH 3.4 Map12585.8RGD
SHRSP x BN Map1242.1099UniSTS
SHRSP x BN Map1242.1099RGD
Cytogenetic Map12q15UniSTS
RH118296  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21232,935,231 - 32,935,427 (+)MAPPERmRatBN7.2
Rnor_6.01238,369,986 - 38,370,181NCBIRnor6.0
Rnor_5.01240,251,109 - 40,251,304UniSTSRnor5.0
RGSC_v3.41234,073,686 - 34,073,881UniSTSRGSC3.4
Celera1234,620,608 - 34,620,803UniSTS
Cytogenetic Map12q15UniSTS
RH133849  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21233,016,648 - 33,016,854 (+)MAPPERmRatBN7.2
Rnor_6.01238,451,408 - 38,451,613NCBIRnor6.0
Rnor_5.01240,332,507 - 40,332,712UniSTSRnor5.0
RGSC_v3.41234,155,273 - 34,155,478UniSTSRGSC3.4
Celera1234,702,017 - 34,702,222UniSTS
RH 3.4 Map12593.8UniSTS
Cytogenetic Map12q15UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 47 31 19 31 8 11 74 35 41 11 8
Low 10 10 10
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001408966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ237670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY829000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M99613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000001685   ⟹   ENSRNOP00000001685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,991 - 33,016,902 (+)Ensembl
Rnor_6.0 Ensembl1238,345,456 - 38,451,661 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078530   ⟹   ENSRNOP00000072766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,991 - 33,016,902 (+)Ensembl
Rnor_6.0 Ensembl1238,375,416 - 38,451,226 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083261   ⟹   ENSRNOP00000068884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,933,939 - 32,951,906 (+)Ensembl
Rnor_6.0 Ensembl1238,368,693 - 38,386,653 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088002   ⟹   ENSRNOP00000073711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,943,745 - 33,017,884 (+)Ensembl
Rnor_6.0 Ensembl1238,377,034 - 38,452,652 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096011   ⟹   ENSRNOP00000090148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098458   ⟹   ENSRNOP00000093783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102474   ⟹   ENSRNOP00000079550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105301   ⟹   ENSRNOP00000092485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105680   ⟹   ENSRNOP00000093663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110644   ⟹   ENSRNOP00000087368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: NM_001408966   ⟹   NP_001395895
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,834 - 38,678,779 (+)NCBI
mRatBN7.21232,910,949 - 33,017,891 (+)NCBI
RefSeq Acc Id: NM_031745   ⟹   NP_113933
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,834 - 38,678,779 (+)NCBI
mRatBN7.21232,910,949 - 33,017,891 (+)NCBI
Rnor_6.01238,345,456 - 38,451,666 (+)NCBI
Rnor_5.01240,226,364 - 40,333,749 (+)NCBI
RGSC_v3.41234,049,773 - 34,155,531 (+)RGD
Celera1234,596,440 - 34,702,275 (+)RGD
Sequence:
RefSeq Acc Id: XM_008769251   ⟹   XP_008767473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769257   ⟹   XP_008767479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769258   ⟹   XP_008767480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769259   ⟹   XP_008767481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089733   ⟹   XP_038945661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089738   ⟹   XP_038945666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_063271618   ⟹   XP_063127688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271619   ⟹   XP_063127689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271620   ⟹   XP_063127690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,533 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271621   ⟹   XP_063127691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271622   ⟹   XP_063127692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271623   ⟹   XP_063127693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271624   ⟹   XP_063127694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271625   ⟹   XP_063127695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271626   ⟹   XP_063127696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271627   ⟹   XP_063127697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271628   ⟹   XP_063127698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271629   ⟹   XP_063127699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271630   ⟹   XP_063127700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,792 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271631   ⟹   XP_063127701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271632   ⟹   XP_063127702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271633   ⟹   XP_063127703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271634   ⟹   XP_063127704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271635   ⟹   XP_063127705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,672,756 (+)NCBI
RefSeq Acc Id: XM_063271636   ⟹   XP_063127706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271637   ⟹   XP_063127707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271638   ⟹   XP_063127708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271639   ⟹   XP_063127709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271640   ⟹   XP_063127710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271641   ⟹   XP_063127711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,627,379 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271642   ⟹   XP_063127712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271643   ⟹   XP_063127713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271644   ⟹   XP_063127714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271645   ⟹   XP_063127715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,636,303 - 38,678,779 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001395895 (Get FASTA)   NCBI Sequence Viewer  
  NP_113933 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767473 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767479 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767480 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767481 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945661 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945666 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127688 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127689 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127690 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127691 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127692 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127693 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127694 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127695 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127696 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127697 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127698 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127699 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127700 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127701 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127702 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127703 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127704 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127705 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127706 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127707 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127708 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127709 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127710 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127711 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127712 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127713 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127714 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127715 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97264 (Get FASTA)   NCBI Sequence Viewer  
  AAW69309 (Get FASTA)   NCBI Sequence Viewer  
  CAB92974 (Get FASTA)   NCBI Sequence Viewer  
  EDM13627 (Get FASTA)   NCBI Sequence Viewer  
  EDM13628 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001685
  ENSRNOP00000001685.8
  ENSRNOP00000068884.1
  ENSRNOP00000072766.2
  ENSRNOP00000073711.2
  ENSRNOP00000079550.1
  ENSRNOP00000087368
  ENSRNOP00000087368.1
  ENSRNOP00000090148
  ENSRNOP00000090148.1
  ENSRNOP00000092485
  ENSRNOP00000092485.1
  ENSRNOP00000093663.1
  ENSRNOP00000093783
  ENSRNOP00000093783.1
  ENSRNOP00055020776
  ENSRNOP00060003507
  ENSRNOP00065006906
GenBank Protein Q9JK25 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113933   ⟸   NM_031745
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K3T3 (UniProtKB/Swiss-Prot),   Q9JK25 (UniProtKB/TrEMBL),   F1MAH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767473   ⟸   XM_008769251
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767479   ⟸   XM_008769257
- Peptide Label: isoform X14
- UniProtKB: A0A8I6A7M2 (UniProtKB/TrEMBL),   A0A0G2K681 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767480   ⟸   XM_008769258
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AJJ0 (UniProtKB/TrEMBL),   A0A0G2K681 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767481   ⟸   XM_008769259
- Peptide Label: isoform X18
- UniProtKB: A0A0G2K681 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072766   ⟸   ENSRNOT00000078530
RefSeq Acc Id: ENSRNOP00000068884   ⟸   ENSRNOT00000083261
RefSeq Acc Id: ENSRNOP00000001685   ⟸   ENSRNOT00000001685
RefSeq Acc Id: ENSRNOP00000073711   ⟸   ENSRNOT00000088002
RefSeq Acc Id: XP_038945661   ⟸   XM_039089733
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945666   ⟸   XM_039089738
- Peptide Label: isoform X21
- UniProtKB: F1MAH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000090148   ⟸   ENSRNOT00000096011
RefSeq Acc Id: ENSRNOP00000087368   ⟸   ENSRNOT00000110644
RefSeq Acc Id: ENSRNOP00000093783   ⟸   ENSRNOT00000098458
RefSeq Acc Id: ENSRNOP00000092485   ⟸   ENSRNOT00000105301
RefSeq Acc Id: ENSRNOP00000093663   ⟸   ENSRNOT00000105680
RefSeq Acc Id: ENSRNOP00000079550   ⟸   ENSRNOT00000102474
RefSeq Acc Id: NP_001395895   ⟸   NM_001408966
- Peptide Label: isoform 2
RefSeq Acc Id: XP_063127690   ⟸   XM_063271620
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127709   ⟸   XM_063271639
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063127697   ⟸   XM_063271627
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063127701   ⟸   XM_063271631
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063127712   ⟸   XM_063271642
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063127692   ⟸   XM_063271622
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063127707   ⟸   XM_063271637
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AFK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127703   ⟸   XM_063271633
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063127713   ⟸   XM_063271643
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063127702   ⟸   XM_063271632
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063127704   ⟸   XM_063271634
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063127714   ⟸   XM_063271644
- Peptide Label: isoform X23
- UniProtKB: A0A8I6AKB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127695   ⟸   XM_063271625
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127705   ⟸   XM_063271635
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063127688   ⟸   XM_063271618
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127706   ⟸   XM_063271636
- Peptide Label: isoform X14
- UniProtKB: A0A8I6A7M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127693   ⟸   XM_063271623
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063127708   ⟸   XM_063271638
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AFK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127710   ⟸   XM_063271640
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063127689   ⟸   XM_063271619
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127691   ⟸   XM_063271621
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127694   ⟸   XM_063271624
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063127696   ⟸   XM_063271626
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127698   ⟸   XM_063271628
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063127699   ⟸   XM_063271629
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GIN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127700   ⟸   XM_063271630
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GIN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127711   ⟸   XM_063271641
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063127715   ⟸   XM_063271645
- Peptide Label: isoform X24
Protein Domains
CAP-Gly

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JK25-F1-model_v2 AlphaFold Q9JK25 1-1320 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698628
Promoter ID:EPDNEW_R9151
Type:multiple initiation site
Name:AC117299_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,340,306 - 38,340,366EPDNEW
RGD ID:13698629
Promoter ID:EPDNEW_R9152
Type:initiation region
Name:Clip1_1
Description:CAP-GLY domain containing linker protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9153  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,345,472 - 38,345,532EPDNEW
RGD ID:13698630
Promoter ID:EPDNEW_R9153
Type:single initiation site
Name:Clip1_2
Description:CAP-GLY domain containing linker protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9152  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,368,678 - 38,368,738EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:67404 AgrOrtholog
BioCyc Gene G2FUF-19319 BioCyc
Ensembl Genes ENSRNOG00000001247 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055014674 UniProtKB/Swiss-Prot
  ENSRNOG00060002932 UniProtKB/Swiss-Prot
  ENSRNOG00065006227 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001685 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000001685.8 UniProtKB/Swiss-Prot
  ENSRNOT00000078530.2 UniProtKB/TrEMBL
  ENSRNOT00000083261.2 UniProtKB/TrEMBL
  ENSRNOT00000088002.2 UniProtKB/TrEMBL
  ENSRNOT00000096011.1 UniProtKB/TrEMBL
  ENSRNOT00000098458.1 UniProtKB/TrEMBL
  ENSRNOT00000102474.1 UniProtKB/TrEMBL
  ENSRNOT00000105301.1 UniProtKB/TrEMBL
  ENSRNOT00000105680.1 UniProtKB/TrEMBL
  ENSRNOT00000110644.1 UniProtKB/TrEMBL
  ENSRNOT00055025456 UniProtKB/Swiss-Prot
  ENSRNOT00060004846 UniProtKB/Swiss-Prot
  ENSRNOT00065009597 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.30.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CAP-Gly_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAP-Gly_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLIP1_ZNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65201 UniProtKB/Swiss-Prot
NCBI Gene 65201 ENTREZGENE
PANTHER CAP-GLY DOMAIN-CONTAINING LINKER PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DYNACTIN 1-RELATED MICROTUBULE-BINDING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CAP_GLY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLIP1_ZNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Clip1 PhenoGen
PROSITE CAP_GLY_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAP_GLY_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001247 RatGTEx
  ENSRNOG00055014674 RatGTEx
  ENSRNOG00060002932 RatGTEx
  ENSRNOG00065006227 RatGTEx
SMART CAP_GLY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF74924 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC218467
UniProt A0A0G2JTX8_RAT UniProtKB/TrEMBL
  A0A0G2K3T3 ENTREZGENE
  A0A0G2K681 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7M2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKB1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIN2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R7P7_RAT UniProtKB/TrEMBL
  CLIP1_RAT UniProtKB/Swiss-Prot
  F1MAH8 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8P6_RAT UniProtKB/TrEMBL
  Q9JK25 ENTREZGENE
UniProt Secondary A0A0G2K3T3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-18 Clip1  CAP-GLY domain containing linker protein 1  Rsn  restin (Reed-Steinberg cell-expressed intermediate filament-associated protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Rsn  restin (Reed-Steinberg cell-expressed intermediate filament-associated protein)    restin  Name updated 1299863 APPROVED
2002-06-10 Rsn  restin      Name updated 70584 APPROVED
2001-07-26 Rsn  Restin (Reed-Steinberg cell-espressed intermediate      Name updated 61478 APPROVED