Ipo5-ps1 (importin 5, pseudogene 1) - Rat Genome Database

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Gene: Ipo5-ps1 (importin 5, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Ipo5-ps1
Name: importin 5, pseudogene 1
RGD ID: 6502448
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: importin-5-like; LOC100909691; LOC364820; similar to RAN binding protein 5
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81812,307,061 - 12,314,738 (-)NCBIGRCr8
mRatBN7.21812,037,723 - 12,039,781 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01815,438,421 - 15,441,383 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01815,217,776 - 15,220,015 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,501,570 - 12,503,688 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1812,044,711 - 12,047,673 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Ipo5-ps1
20 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat

Markers in Region
RH130384  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,037,710 - 12,037,891 (-)MAPPERmRatBN7.2
mRatBN7.21598,039,233 - 98,039,872 (+)MAPPERmRatBN7.2
Rnor_6.015106,291,486 - 106,292,124NCBIRnor6.0
Rnor_6.01815,440,311 - 15,440,491NCBIRnor6.0
Rnor_5.01815,219,000 - 15,219,180UniSTSRnor5.0
Rnor_5.015109,687,385 - 109,688,023UniSTSRnor5.0
RGSC_v3.41812,501,618 - 12,501,798UniSTSRGSC3.4
RGSC_v3.415106,020,163 - 106,020,801UniSTSRGSC3.4
Celera1596,847,637 - 96,848,275UniSTS
Celera1812,045,603 - 12,045,783UniSTS
Cytogenetic Map15q24UniSTS
C76941  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,037,856 - 12,038,058 (-)MAPPERmRatBN7.2
mRatBN7.21598,037,637 - 98,039,268 (+)MAPPERmRatBN7.2
Rnor_6.015106,289,890 - 106,291,520NCBIRnor6.0
Rnor_6.01815,440,144 - 15,440,345NCBIRnor6.0
Rnor_5.01815,218,833 - 15,219,034UniSTSRnor5.0
Rnor_5.015109,685,789 - 109,687,419UniSTSRnor5.0
RGSC_v3.41812,501,764 - 12,501,965UniSTSRGSC3.4
RGSC_v3.415106,018,567 - 106,020,197UniSTSRGSC3.4
Celera1596,846,041 - 96,847,671UniSTS
Celera1812,045,749 - 12,045,950UniSTS
Cytogenetic Map15q24UniSTS


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-8219 BioCyc
NCBI Gene LOC100909691 ENTREZGENE
PhenoGen Ipo5-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ipo5-ps1  importin 5, pseudogene 1  LOC100909691  importin-5-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC100909691  importin-5-like  LOC364820  similar to RAN binding protein 5  Data merged from RGD:1588519 737654 PROVISIONAL
2012-07-05 LOC100909691  importin-5-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC364820  similar to RAN binding protein 5      Symbol and Name status set to provisional 70820 PROVISIONAL