Zfp433l (zinc finger protein 433 like) - Rat Genome Database

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Gene: Zfp433l (zinc finger protein 433 like) Rattus norvegicus
Analyze
Symbol: Zfp433l (Ensembl: LOC100909682)
Name: zinc finger protein 433 like (Ensembl:zinc finger protein 709-like)
RGD ID: 6502389
Description: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100909682; zinc finger protein 431-like; zinc finger protein 709-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,636,831 - 8,651,414 (-)NCBIGRCr8
mRatBN7.277,985,637 - 8,001,173 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl77,986,047 - 8,000,646 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0710,829,403 - 10,831,957 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0710,997,993 - 11,001,088 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera76,177,413 - 6,191,606 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

Genomics

Variants

.
Variants in Zfp433l
148 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000044932   ⟹   ENSRNOP00000086047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl77,986,047 - 8,000,646 (-)Ensembl
RefSeq Acc Id: XM_039080427   ⟹   XP_038936355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr878,636,831 - 8,651,414 (-)NCBI
mRatBN7.277,985,637 - 8,001,173 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038936355 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000086047
  ENSRNOP00000086047.1
Reference Protein Sequences
RefSeq Acc Id: XP_038936355   ⟸   XM_039080427
- UniProtKB: A0A8I6A4K5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000086047   ⟸   ENSRNOT00000044932
Protein Domains
C2H2-type   KRAB

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35049 BioCyc
Ensembl Genes ENSRNOG00000064149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044932.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC100909682 ENTREZGENE
PANTHER KRAB AND ZINC FINGER DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 14 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PhenoGen Zfp433l PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000064149 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6A4K5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Zfp433l  zinc finger protein 433 like  LOC100909682  zinc finger protein 709-like  Symbol and Name Changed 1299863 APPROVED
2012-07-05 LOC100909682  zinc finger protein 709-like      Symbol and Name status set to provisional 70820 PROVISIONAL