LOC100910558 (uncharacterized LOC100910558) - Rat Genome Database

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Gene: LOC100910558 (uncharacterized LOC100910558) Rattus norvegicus
Analyze
Symbol: LOC100910558
Name: uncharacterized LOC100910558
RGD ID: 6497980
Description:
Type: ncrna
RefSeq Status: VALIDATED
Previously known as: hypothetical LOC362536; LOC362536; RGD1564859
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85102,022,125 - 102,060,125 (+)NCBIGRCr8
mRatBN7.2596,976,181 - 97,014,187 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx599,354,485 - 99,392,508 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05101,155,809 - 101,193,854 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05101,165,341 - 101,203,374 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05100,650,512 - 100,688,185 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05104,676,907 - 104,715,699 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45101,414,081 - 101,447,591 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera595,531,084 - 95,569,061 (+)NCBICelera
Cytogenetic Map5q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:29351317  


Genomics

Variants

.
Variants in LOC100910558
127 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)58384059897059958Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat

Markers in Region
RH132021  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2597,013,981 - 97,014,171 (+)MAPPERmRatBN7.2
Rnor_6.05100,687,980 - 100,688,169NCBIRnor6.0
Rnor_5.05104,715,494 - 104,715,683UniSTSRnor5.0
RGSC_v3.45101,456,449 - 101,456,638UniSTSRGSC3.4
Celera595,568,856 - 95,569,045UniSTS
RH 3.4 Map5727.1UniSTS
Cytogenetic Map5q31UniSTS


Expression


Sequence


RefSeq Acc Id: NR_110678
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85102,022,125 - 102,060,125 (+)NCBI
mRatBN7.2596,976,181 - 97,014,187 (+)NCBI
Rnor_6.05100,650,512 - 100,688,185 (+)NCBI
Celera595,531,084 - 95,569,061 (+)NCBI
Sequence:
RefSeq Acc Id: NR_110679
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85102,022,125 - 102,060,125 (+)NCBI
mRatBN7.2596,976,181 - 97,014,187 (+)NCBI
Rnor_6.05100,650,512 - 100,688,185 (+)NCBI
Celera595,531,084 - 95,569,061 (+)NCBI
Sequence:
RefSeq Acc Id: NR_110680
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85102,022,125 - 102,060,125 (+)NCBI
mRatBN7.2596,976,181 - 97,014,187 (+)NCBI
Rnor_6.05100,650,512 - 100,688,185 (+)NCBI
Celera595,531,084 - 95,569,061 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein EDM10467 (Get FASTA)   NCBI Sequence Viewer  
  EDM10468 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-40898 BioCyc
NCBI Gene LOC100910558 ENTREZGENE
PhenoGen LOC100910558 PhenoGen
RNAcentral URS000075D910 RNACentral
  URS000075DFEC RNACentral
  URS000075ED3D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-13 LOC100910558  uncharacterized LOC100910558  RGD1564859  RGD1564859  Data merged from RGD:1564859 737654 PROVISIONAL
2012-07-05 LOC100910558  uncharacterized LOC100910558      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1564859  RGD1564859   RGD1564859_predicted  RGD1564859 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564859_predicted  RGD1564859 (predicted)  LOC362536  hypothetical LOC362536  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362536  hypothetical LOC362536      Symbol and Name status set to provisional 70820 PROVISIONAL