Lin28a-ps (abnormal cell lineage 28, pseudogene 1) - Rat Genome Database

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Gene: Lin28a-ps (abnormal cell lineage 28, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Lin28a-ps
Name: abnormal cell lineage 28, pseudogene 1
RGD ID: 6491577
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100911638; protein lin-28 homolog A-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr875,902,236 - 5,902,845 (-)NCBIGRCr8
mRatBN7.275,251,400 - 5,252,009 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0496,996,001 - 96,996,589 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04161,781,483 - 161,782,071 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera490,143,951 - 90,144,539 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Lin28a-ps
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35156 BioCyc
NCBI Gene LOC100911638 ENTREZGENE
PhenoGen Lin28a-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Lin28a-ps  abnormal cell lineage 28, pseudogene 1  LOC100911638  protein lin-28 homolog A-like  Symbol and Name Changed 1299863 APPROVED
2012-07-05 LOC100911638  protein lin-28 homolog A-like      Symbol and Name status set to provisional 70820 PROVISIONAL