LOC100911617 (protein arginine N-methyltransferase 6-like) - Rat Genome Database

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Pathways
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Gene: LOC100911617 (protein arginine N-methyltransferase 6-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100911617
Name: protein arginine N-methyltransferase 6-like
RGD ID: 6491483
Description: PARTICIPATES IN histone modification pathway
Type: protein-coding
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release; Note: LOC100911617 appears to be a duplicate placement of Prmt6 (GeneID: 295384) on Rnor_6.0 that is not present on Rn_Celera (Annotation Release 105) and not supported by synteny in mouse and human. Additionally, gene neighbor LOC102552915 also appears to be duplicated as LOC102547648. BLASting LOC100911617 XM_008761447.1 and Prmt6 NM_001106466.1 against the rat genome shows best hits to NC_005101.4 on Rnor_6.0 at locations where LOC100911617 and Prmt6 are annotated and to AC_000070.1 on Rn_Celera only at location where Prmt6 is annotated (Annotation Release 105). 2-sequence BLAST of Prmt6 NM_001106466.1 against LOC100911617 XM_008761447.1 shows high sequence identity (100% coverage, 100% identity). 2-sequence BLAST of LOC100911617 underlying component AABR07012875.1 against Prmt6 underlying component AABR07012881.1 shows 99% sequence identity across ~34 kb. [26 Mar 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02213,173,403 - 213,180,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02232,642,305 - 232,649,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map2 NCBI


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Readers of histone methylarginine marks. Gayatri S and Bedford MT, Biochim Biophys Acta. 2014 Aug;1839(8):702-710. doi: 10.1016/j.bbagrm.2014.02.015. Epub 2014 Feb 28.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Markers in Region
UniSTS:234807  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22197,934,337 - 197,934,674 (+)MAPPERmRatBN7.2
Rnor_6.02213,423,237 - 213,423,573NCBIRnor6.0
Rnor_6.02213,179,991 - 213,180,327NCBIRnor6.0
Rnor_5.02232,648,893 - 232,649,229UniSTSRnor5.0
Rnor_5.02232,891,540 - 232,891,876UniSTSRnor5.0
RGSC_v3.42205,916,507 - 205,916,843UniSTSRGSC3.4
Celera2190,569,309 - 190,569,645UniSTS
Cytogenetic Map2q41UniSTS
Prmt6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22197,931,620 - 197,932,220 (+)MAPPERmRatBN7.2
Rnor_6.02213,420,520 - 213,421,119NCBIRnor6.0
Rnor_6.02213,177,274 - 213,177,873NCBIRnor6.0
Rnor_5.02232,646,176 - 232,646,775UniSTSRnor5.0
Rnor_5.02232,888,823 - 232,889,422UniSTSRnor5.0
RGSC_v3.42205,913,790 - 205,914,389UniSTSRGSC3.4
Celera2190,566,592 - 190,567,191UniSTS
Cytogenetic Map2q41UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003749382   ⟹   XP_003749430
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_006233205   ⟹   XP_006233267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.02232,642,305 - 232,649,350 (-)NCBI
RefSeq Acc Id: XM_008761447   ⟹   XP_008759669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02213,173,403 - 213,180,727 (-)NCBI
RefSeq Acc Id: XR_351966
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.02232,642,305 - 232,649,350 (-)NCBI

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6491483 AgrOrtholog
NCBI Gene LOC100911617 ENTREZGENE
PhenoGen LOC100911617 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100911617  protein arginine N-methyltransferase 6-like      Symbol and Name status set to provisional 70820 PROVISIONAL