LOC100911728 (40S ribosomal protein S27-like) - Rat Genome Database

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Gene: LOC100911728 (40S ribosomal protein S27-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100911728 (Ensembl: LOC108353425)
Name: 40S ribosomal protein S27-like
RGD ID: 6491355
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in rRNA processing and translation. Predicted to be part of cytosolic small ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small ribosomal subunit protein eS27-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81385,615,534 - 85,615,834 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1233,713,661 - 33,714,130 (-)EnsemblGRCr8
mRatBN7.21383,082,817 - 83,083,112 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1228,077,660 - 28,078,131 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1383,082,817 - 83,083,056 (+)EnsemblmRatBN7.2
Rnor_6.01389,218,844 - 89,219,219 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01393,831,316 - 93,831,602 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1382,737,213 - 82,737,588 (+)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component
cytosol  (IEA)
ribosome  (IEA)

Molecular Function

References

Genomics

Variants

.
Variants in LOC100911728
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
94 36 140 397 751 233 409 20 175 156 169 35 1293 747 102 757 2 378 263 241 54 52

Sequence


Ensembl Acc Id: ENSRNOT00000113132   ⟹   ENSRNOP00000084721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1383,082,817 - 83,083,056 (+)Ensembl
RefSeq Acc Id: XM_003751271   ⟹   XP_003751319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81385,615,534 - 85,615,834 (+)NCBI
mRatBN7.21383,082,817 - 83,083,112 (+)NCBI
Rnor_6.01389,218,844 - 89,219,219 (+)NCBI
Rnor_5.01393,831,316 - 93,831,602 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003751319 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000105020.1
RefSeq Acc Id: XP_003751319   ⟸   XM_003751271
- UniProtKB: A0ABK0LMT2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000084721   ⟸   ENSRNOT00000113132

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6491355 AgrOrtholog
BioCyc Gene G2FUF-17468 BioCyc
Ensembl Genes ENSRNOG00000016961 UniProtKB/TrEMBL
  ENSRNOG00000063975 Ensembl
  ENSRNOG00000066445 Ensembl
Ensembl Transcript ENSRNOT00000135863.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.25.100 UniProtKB/TrEMBL
InterPro Ribosomal_S27 UniProtKB/TrEMBL
  Ribosomal_S27_Zn-bd_dom_sf UniProtKB/TrEMBL
  Ribosomal_zn-bd UniProtKB/TrEMBL
NCBI Gene LOC100911728 ENTREZGENE
PANTHER PTHR11594 UniProtKB/TrEMBL
Pfam Ribosomal_S27e UniProtKB/TrEMBL
PhenoGen LOC100911728 PhenoGen
PROSITE RIBOSOMAL_S27E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016961 RatGTEx
  ENSRNOG00000063975 RatGTEx
  ENSRNOG00000066445 RatGTEx
Superfamily-SCOP SSF57829 UniProtKB/TrEMBL
UniProt A0ABK0LMT2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100911728  40S ribosomal protein S27-like      Symbol and Name status set to provisional 70820 PROVISIONAL