Vmn2r116l-ps25 (vomeronasal 2, receptor 116 like, pseudogene 25) - Rat Genome Database

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Gene: Vmn2r116l-ps25 (vomeronasal 2, receptor 116 like, pseudogene 25) Rattus norvegicus
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Symbol: Vmn2r116l-ps25
Name: vomeronasal 2, receptor 116 like, pseudogene 25
RGD ID: 6489646
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000066280; LOC100911926; LOC103690072; LOC502211; RGD1563755; similar to putative pheromone receptor; vomeronasal type-2 receptor 116-like; vomeronasal type-2 receptor 26-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81103,314 - 112,335 (+)NCBIGRCr8
mRatBN7.21343,336 - 352,148 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,336 - 352,148 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1343,336 - 352,148 (+)NCBImRatBN7.2 Ensembl
Rnor_6.0844,638,495 - 44,659,459 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl844,638,556 - 44,667,876 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0860,880,949 - 60,901,933 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,344 - 267,011 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Vmn2r116l-ps25
183 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000044669   ⟹   ENSRNOP00000043136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl844,638,556 - 44,667,876 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099343   ⟹   ENSRNOP00000085132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1343,336 - 352,148 (+)Ensembl
RefSeq Acc Id: XM_003750513   ⟹   XP_003750561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0860,881,030 - 60,901,933 (-)NCBI
RefSeq Acc Id: XM_008766128   ⟹   XP_008764350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0844,638,506 - 44,659,540 (+)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000085132.1
RefSeq Acc Id: XP_003750561   ⟸   XM_003750513
RefSeq Acc Id: XP_008764350   ⟸   XM_008766128
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000043136   ⟸   ENSRNOT00000044669
RefSeq Acc Id: ENSRNOP00000085132   ⟸   ENSRNOT00000099343
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZF80-F1-model_v2 AlphaFold D3ZF80 1-845 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62510 BioCyc
Ensembl Genes ENSRNOG00000046189 Ensembl
  ENSRNOG00000066280 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000099343.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
NCBI Gene LOC100911926 ENTREZGENE
PANTHER PTHR24061 UniProtKB/TrEMBL
  VOMERONASAL 2, RECEPTOR 10-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Vmn2r116l-ps25 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046189 RatGTEx
  ENSRNOG00000066280 RatGTEx
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt A0A8I6GCH7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Vmn2r116l-ps25  vomeronasal 2, receptor 116 like, pseudogene 25  LOC100911926  vomeronasal type-2 receptor 26-like  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC100911926  vomeronasal type-2 receptor 26-like  ENSRNOG00000066280    Data merged from RGD:150343973 737654 PROVISIONAL
2021-08-31 ENSRNOG00000066280        Symbol and Name status set to provisional 45752 PROVISIONAL
2021-03-09 LOC100911926  vomeronasal type-2 receptor 26-like  LOC103690072  vomeronasal type-2 receptor 116-like  Data merged from RGD:9199901 737654 PROVISIONAL
2015-07-29 LOC103690072  vomeronasal type-2 receptor 116-like  RGD1563755  similar to putative pheromone receptor  Data merged from RGD:1563755 737654 PROVISIONAL
2014-08-25 LOC103690072  vomeronasal type-2 receptor 116-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100911926  vomeronasal type-2 receptor 26-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1563755  similar to putative pheromone receptor   RGD1563755_predicted  similar to putative pheromone receptor (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563755_predicted  similar to putative pheromone receptor (predicted)  LOC502211  similar to putative pheromone receptor  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502211  similar to putative pheromone receptor      Symbol and Name status set to provisional 70820 PROVISIONAL