C17h9orf153 (similar to human chromosome 9 open reading frame 153) - Rat Genome Database

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Gene: C17h9orf153 (similar to human chromosome 9 open reading frame 153) Rattus norvegicus
Analyze
Symbol: C17h9orf153 (Ensembl: LOC100912252)
Name: similar to human chromosome 9 open reading frame 153 (Ensembl:uncharacterized LOC100912252)
RGD ID: 6488044
Description: Orthologous to human C9orf153 (chromosome 9 open reading frame 153); INTERACTS WITH 2-hydroxypropanoic acid (ortholog); aflatoxin B1 (ortholog); bis(2-ethylhexyl) phthalate (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC681199; LOC100912252; LOC681199; uncharacterized LOC100912252; uncharacterized protein C9orf153 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,978,994 - 4,987,920 (+)NCBIGRCr8
mRatBN7.2174,975,415 - 4,982,400 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl174,964,834 - 4,982,766 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx174,995,433 - 5,001,754 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0176,537,206 - 6,543,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0174,991,878 - 4,998,199 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0175,353,600 - 5,360,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,353,622 - 5,360,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0177,578,290 - 7,585,404 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41710,885,420 - 10,888,913 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera175,096,253 - 5,103,492 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
C17h9orf153
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,978,994 - 4,987,920 (+)NCBIGRCr8
mRatBN7.2174,975,415 - 4,982,400 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl174,964,834 - 4,982,766 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx174,995,433 - 5,001,754 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0176,537,206 - 6,543,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0174,991,878 - 4,998,199 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0175,353,600 - 5,360,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,353,622 - 5,360,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0177,578,290 - 7,585,404 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41710,885,420 - 10,888,913 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera175,096,253 - 5,103,492 (+)NCBICelera
Cytogenetic Map17p14NCBI
C9orf153
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38986,220,265 - 86,259,657 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl986,220,265 - 86,259,657 (-)EnsemblGRCh38hg38GRCh38
GRCh37988,835,180 - 88,874,572 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36988,032,046 - 88,064,339 (-)NCBINCBI36Build 36hg18NCBI36
Celera959,412,336 - 59,444,629 (-)NCBICelera
Cytogenetic Map9q21.33NCBI
HuRef958,657,925 - 58,697,322 (-)NCBIHuRef
CHM1_1988,981,628 - 89,021,015 (-)NCBICHM1_1
T2T-CHM13v2.0998,371,493 - 98,410,882 (-)NCBIT2T-CHM13v2.0
4921517D22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391359,835,216 - 59,841,917 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1359,835,216 - 59,841,922 (-)EnsemblGRCm39 Ensembl
GRCm381359,687,402 - 59,694,103 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1359,687,402 - 59,694,108 (-)EnsemblGRCm38mm10GRCm38
MGSCv371359,788,763 - 59,795,462 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361359,697,085 - 59,703,724 (-)NCBIMGSCv36mm8
Celera1360,743,398 - 60,750,081 (-)NCBICelera
Cytogenetic Map13B2NCBI
cM Map1331.87NCBI
LOC102024494
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554321,378,900 - 1,388,563 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554321,362,227 - 1,386,118 (+)NCBIChiLan1.0ChiLan1.0
C11H9orf153
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21185,329,071 - 85,360,879 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1985,335,013 - 85,366,821 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0938,698,388 - 38,707,771 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1982,881,001 - 82,890,468 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl982,880,950 - 82,890,435 (+)Ensemblpanpan1.1panPan2
ISCA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1173,468,850 - 73,527,123 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl173,487,403 - 73,525,830 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,230,406 - 74,288,757 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0173,775,337 - 73,833,575 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl173,827,475 - 73,832,275 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1173,583,117 - 73,641,188 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0173,349,818 - 73,408,144 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0174,055,822 - 74,114,054 (+)NCBIUU_Cfam_GSD_1.0
CUNH9orf153
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947120,071,830 - 120,096,471 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366801,642,373 - 1,657,286 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C10H9orf153
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11029,085,338 - 29,098,769 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21033,128,372 - 33,141,568 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH9orf153
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11296,856,571 - 96,899,263 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603885,207,478 - 85,250,651 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in C17h9orf153
67 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:17
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000068160
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system appendage
High
Medium 7
Low 1
Below cutoff 1 5 6 2 2 9 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000068160   ⟹   ENSRNOP00000059484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl174,964,834 - 4,982,766 (+)Ensembl
Rnor_6.0 Ensembl175,353,622 - 5,360,553 (+)Ensembl
RefSeq Acc Id: NM_001402454   ⟹   NP_001389383
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,980,935 - 4,987,920 (+)NCBI
mRatBN7.2174,975,415 - 4,982,400 (+)NCBI
RefSeq Acc Id: XM_063276008   ⟹   XP_063132078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,980,899 - 4,987,920 (+)NCBI
RefSeq Acc Id: XM_063276009   ⟹   XP_063132079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,979,519 - 4,987,920 (+)NCBI
RefSeq Acc Id: XM_063276010   ⟹   XP_063132080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,978,994 - 4,987,920 (+)NCBI
RefSeq Acc Id: XM_063276011   ⟹   XP_063132081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,980,898 - 4,987,920 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000059484   ⟸   ENSRNOT00000068160
RefSeq Acc Id: NP_001389383   ⟸   NM_001402454
- UniProtKB: D4A951 (UniProtKB/TrEMBL),   A6KAH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132080   ⟸   XM_063276010
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063132079   ⟸   XM_063276009
- Peptide Label: isoform X1
- UniProtKB: A6KAH6 (UniProtKB/TrEMBL),   D4A951 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132081   ⟸   XM_063276011
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063132078   ⟸   XM_063276008
- Peptide Label: isoform X1
- UniProtKB: A6KAH6 (UniProtKB/TrEMBL),   D4A951 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A951-F1-model_v2 AlphaFold D4A951 1-268 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700278
Promoter ID:EPDNEW_R10799
Type:multiple initiation site
Name:LOC100912252_1
Description:uncharacterized LOC100912252
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0175,353,607 - 5,353,667EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6488044 AgrOrtholog
BioCyc Gene G2FUF-10412 BioCyc
Ensembl Genes ENSRNOG00000042206 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068160 ENTREZGENE
  ENSRNOT00000068160.3 UniProtKB/TrEMBL
InterPro C9orf153-like UniProtKB/TrEMBL
KEGG Report rno:100912252 UniProtKB/TrEMBL
NCBI Gene LOC100912252 ENTREZGENE
PANTHER PTHR37353 UniProtKB/TrEMBL
  RIKEN CDNA 4921517D22 GENE UniProtKB/TrEMBL
Pfam DUF5532 UniProtKB/TrEMBL
PhenoGen C17h9orf153 PhenoGen
RatGTEx ENSRNOG00000042206 RatGTEx
UniProt A6KAH6 ENTREZGENE, UniProtKB/TrEMBL
  D4A951 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C17h9orf153  similar to human chromosome 9 open reading frame 153  LOC100912252  uncharacterized LOC100912252  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC100912252  uncharacterized LOC100912252  LOC681199  hypothetical protein LOC681199  Data merged from RGD:1583492 737654 PROVISIONAL
2012-07-05 LOC100912252  uncharacterized LOC100912252      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC681199  hypothetical protein LOC681199      Symbol and Name status set to provisional 70820 PROVISIONAL