Zfp873 (zinc finger protein 873) - Rat Genome Database

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Gene: Zfp873 (zinc finger protein 873) Rattus norvegicus
Analyze
Symbol: Zfp873 (Ensembl: LOC100912294)
Name: zinc finger protein 873 (Ensembl:zinc finger protein 709-like)
RGD ID: 6487604
Description: Predicted to enable endonuclease activity; metal ion binding activity; and nucleotidyltransferase activity. Predicted to be involved in regulation of DNA-templated transcription; INTERACTS WITH amphetamine; acrylamide (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100360514; LOC100912294; zinc finger protein 431-like; zinc finger protein 709-like; zinc finger-like protein-like
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,577,725 - 8,602,577 (-)NCBIGRCr8
mRatBN7.277,926,951 - 7,959,822 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl77,926,957 - 7,951,803 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl78,013,122 - 8,018,206 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0710,770,854 - 10,796,000 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0710,940,314 - 10,965,382 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,478,497 - 9,490,360 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera76,117,669 - 6,142,667 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zfp873
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,577,725 - 8,602,577 (-)NCBIGRCr8
mRatBN7.277,926,951 - 7,959,822 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl77,926,957 - 7,951,803 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl78,013,122 - 8,018,206 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0710,770,854 - 10,796,000 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0710,940,314 - 10,965,382 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,478,497 - 9,490,360 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera76,117,669 - 6,142,667 (-)NCBICelera
Cytogenetic Map7q11NCBI
ZNF441
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,767,000 - 11,784,078 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,767,000 - 11,784,078 (+)EnsemblGRCh38hg38GRCh38
GRCh371911,877,815 - 11,894,893 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,738,907 - 11,754,301 (+)NCBINCBI36Build 36hg18NCBI36
Build 341911,738,906 - 11,754,301NCBI
Celera1911,772,268 - 11,789,345 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,452,542 - 11,469,618 (+)NCBIHuRef
CHM1_11911,877,668 - 11,894,746 (+)NCBICHM1_1
T2T-CHM13v2.01911,895,201 - 11,912,279 (+)NCBIT2T-CHM13v2.0
Zfp873
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,883,918 - 81,914,461 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,883,957 - 81,900,579 (+)EnsemblGRCm39 Ensembl
GRCm381082,048,084 - 82,077,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,048,123 - 82,064,745 (+)EnsemblGRCm38mm10GRCm38
MGSCv371081,510,872 - 81,524,331 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361081,488,272 - 81,491,385 (+)NCBIMGSCv36mm8
Celera1083,969,542 - 83,983,011 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
LOC100988783
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,680,527 - 16,698,750 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,679,912 - 15,697,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,314,513 - 11,332,116 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11912,024,197 - 12,041,088 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1912,024,203 - 12,041,081 (+)Ensemblpanpan1.1panPan2
ZNF441
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,671,048 - 10,685,663 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660749,144,536 - 9,160,999 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Zfp873
144 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000042386   ⟹   ENSRNOP00000040976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl77,926,957 - 7,951,803 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000043099   ⟹   ENSRNOP00000045941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl78,013,122 - 8,018,206 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102667   ⟹   ENSRNOP00000079155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl77,926,957 - 7,942,869 (-)Ensembl
RefSeq Acc Id: NM_001421390   ⟹   NP_001408319
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr878,577,731 - 8,602,577 (-)NCBI
mRatBN7.277,926,957 - 7,951,803 (-)NCBI
RefSeq Acc Id: NM_001421391   ⟹   NP_001408320
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr878,577,731 - 8,602,577 (-)NCBI
mRatBN7.277,926,957 - 7,951,803 (-)NCBI
RefSeq Acc Id: XM_063262855   ⟹   XP_063118925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr878,577,725 - 8,589,926 (-)NCBI
RefSeq Acc Id: XM_063262856   ⟹   XP_063118926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr878,577,725 - 8,589,926 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001408319 (Get FASTA)   NCBI Sequence Viewer  
  NP_001408320 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118925 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118926 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040976
  ENSRNOP00000040976.4
  ENSRNOP00000079155.1
RefSeq Acc Id: ENSRNOP00000045941   ⟸   ENSRNOT00000043099
RefSeq Acc Id: ENSRNOP00000079155   ⟸   ENSRNOT00000102667
RefSeq Acc Id: ENSRNOP00000040976   ⟸   ENSRNOT00000042386
RefSeq Acc Id: NP_001408319   ⟸   NM_001421390
- Peptide Label: isoform 1
- UniProtKB: F1M3Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001408320   ⟸   NM_001421391
- Peptide Label: isoform 2
RefSeq Acc Id: XP_063118925   ⟸   XM_063262855
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118926   ⟸   XM_063262856
- Peptide Label: isoform X2
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M4D5-F1-model_v2 AlphaFold F1M4D5 1-500 view protein structure
AF-F1M3Z8-F1-model_v2 AlphaFold F1M3Z8 1-629 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35052 BioCyc
Ensembl Genes ENSRNOG00000064426 Ensembl
  ENSRNOG00000066348 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042386 ENTREZGENE
  ENSRNOT00000042386.4 UniProtKB/TrEMBL
  ENSRNOT00000102667.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  MLVIN_C UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report rno:100912294 UniProtKB/TrEMBL
NCBI Gene LOC100912294 ENTREZGENE
PANTHER FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED UniProtKB/TrEMBL
  KRAB AND ZINC FINGER DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 709 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 977 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  MLVIN_C UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PhenoGen Zfp873 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000064426 RatGTEx
  ENSRNOG00000066348 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZMU9_RAT UniProtKB/TrEMBL
  F1M3Z8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-18 Zfp873  zinc finger protein 873  LOC100912294  zinc finger protein 709-like  Name and Symbol changed 629549 APPROVED
2021-03-09 LOC100912294  zinc finger protein 709-like  LOC100360514  zinc finger-like protein-like  Data merged from RGD:2321943 737654 PROVISIONAL
2012-07-05 LOC100912294  zinc finger protein 709-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100360514  zinc finger-like protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL