H60bl1 (histocompatibility 60b like 1) - Rat Genome Database

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Gene: H60bl1 (histocompatibility 60b like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: H60bl1 (Ensembl: LOC100913013)
Name: histocompatibility 60b like 1 (Ensembl:retinoic acid early-inducible protein 1-beta-like)
RGD ID: 6485107
Description: Predicted to be located in plasma membrane and side of membrane.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histocompatibility antigen 60b-like; LOC100913013; retinoic acid early-inducible protein 1-beta-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813,718,878 - 3,721,312 (-)NCBIGRCr8
mRatBN7.211,907,061 - 1,909,496 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl11,749,136 - 1,909,950 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.011,287,097 - 1,289,604 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.012,990,917 - 2,993,296 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1434,957 - 462,366 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Variants

.
Variants in H60bl1
107 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat

Markers in Region
G39584  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.211,365,169 - 1,365,430 (+)MAPPERmRatBN7.2
Rnor_6.011,528,205 - 1,528,465NCBIRnor6.0
Rnor_5.013,226,674 - 3,226,934UniSTSRnor5.0
Celera1494,423 - 494,726UniSTS
Celera1297,227 - 297,490UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006227608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000115533   ⟹   ENSRNOP00000087753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl11,749,136 - 1,909,950 (-)Ensembl
RefSeq Acc Id: XM_006227608   ⟹   XP_006227670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813,718,878 - 3,721,312 (-)NCBI
mRatBN7.211,907,061 - 1,909,496 (-)NCBI
Rnor_6.011,287,097 - 1,289,604 (-)NCBI
Rnor_5.012,990,917 - 2,993,296 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006227670 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000087753
  ENSRNOP00000087753.1
RefSeq Acc Id: XP_006227670   ⟸   XM_006227608
- UniProtKB: A0A8I6GGC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000087753   ⟸   ENSRNOT00000115533
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62462 BioCyc
Ensembl Genes ENSRNOG00000071074 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000115533 ENTREZGENE
  ENSRNOT00000115533.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.500.10 UniProtKB/TrEMBL
InterPro MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  RAE-1 UniProtKB/TrEMBL
KEGG Report rno:100913013 UniProtKB/TrEMBL
NCBI Gene LOC100913013 ENTREZGENE
PANTHER HISTOCOMPATIBILITY ANTIGEN 60B-RELATED UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam MHC_I_2 UniProtKB/TrEMBL
PhenoGen H60bl1 PhenoGen
RatGTEx ENSRNOG00000071074 RatGTEx
Superfamily-SCOP SSF54452 UniProtKB/TrEMBL
UniProt A0A8I6GGC1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 H60bl1  histocompatibility 60b like 1  LOC100913013  retinoic acid early-inducible protein 1-beta-like  Symbol and Name Changed 1299863 APPROVED
2012-07-05 LOC100913013  retinoic acid early-inducible protein 1-beta-like      Symbol and Name status set to provisional 70820 PROVISIONAL