SNX3P1X (sorting nexin 3 pseudogene 1 X-linked) - Rat Genome Database

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Gene: SNX3P1X (sorting nexin 3 pseudogene 1 X-linked) Homo sapiens
Analyze
Symbol: SNX3P1X
Name: sorting nexin 3 pseudogene 1 X-linked
RGD ID: 6481443
HGNC Page HGNC:41516
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: sorting nexin 3 pseudogene 1, X-linked
Related Functional Gene: SNX3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X92,515,326 - 92,515,497 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX92,515,323 - 92,515,497 (-)EnsemblGRCh38hg38GRCh38
GRCh37X91,770,325 - 91,770,496 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq21.31NCBI
CHM1_1X91,663,277 - 91,663,448 (-)NCBICHM1_1
T2T-CHM13v2.0X90,965,572 - 90,965,743 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:21
Count of miRNA genes:20
Interacting mature miRNAs:21
Transcripts:ENST00000414887
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 9 4 8 2 4 48 3 1
Below cutoff 9 29 11 3 9 19 5 63 96 12 3 2 12

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000414887
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX92,515,323 - 92,515,497 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SNX3P1X COSMIC
Ensembl Genes ENSG00000230543 Ensembl, ENTREZGENE
GTEx ENSG00000230543 GTEx
HGNC ID HGNC:41516 ENTREZGENE
Human Proteome Map SNX3P1X Human Proteome Map
NCBI Gene SNX3P1X ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 SNX3P1X  sorting nexin 3 pseudogene 1 X-linked    sorting nexin 3 pseudogene 1, X-linked  Symbol and/or name change 5135510 APPROVED