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Gene Ontology Annotations
Gene Ontology AnnotationsBiological Process Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | cardiac muscle cell differentiation | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | cellular response to glucocorticoid stimulus | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3840749|PMID:19319192 | RGD | MGI:MGI:3840749 PMID:19319192 | cellular response to glucocorticoid stimulus | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | cellular response to oxygen levels | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3840749|PMID:19319192 | RGD | MGI:MGI:3840749 PMID:19319192 | cellular response to oxygen levels | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | cellular response to starvation | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3840749|PMID:19319192 | RGD | MGI:MGI:3840749 PMID:19319192 | cellular response to starvation | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | muscle organ development | | ISO | RGD:1332500 | 1624291 | MGI:MGI:97252 | RGD | MGI:MGI:3525903 PMID:15634692 | muscle organ development | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3047475|PMID:15192231 | RGD | MGI:MGI:3047475 PMID:15192231 | myoblast differentiation | | ISO | RGD:1332500 | 1624291 | MGI:MGI:2180395|PMID:12037571 | RGD | MGI:MGI:2180395 PMID:12037571 | myoblast differentiation | | ISS | UniProtKB:P10085 | | PMID:12037571 | UniProtKB | PMID:12037571 | myoblast differentiation | | ISO | RGD:1332500 | 1624291 | MGI:MGI:2651740|PMID:12486129 | RGD | MGI:MGI:2651740 PMID:12486129 | myoblast fate determination | | ISO | RGD:1332500 | 1624291 | MGI:MGI:2651740|PMID:12486129 | RGD | MGI:MGI:2651740 PMID:12486129 | myoblast fate determination | | ISS | UniProtKB:P10085 | | PMID:12486129 | UniProtKB | PMID:12486129 | myoblast fate determination | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | myotube cell development | | IEA | Ensembl:ENSP00000250003 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | myotube cell development | | ISO | RGD:1353183 | 1624291 | PMID:10672515 | RGD | PMID:10672515 | myotube differentiation involved in skeletal muscle regeneration | | ISO | RGD:1332500 | 1624291 | MGI:MGI:48687|PMID:1348494 | RGD | MGI:MGI:48687 PMID:1348494 | myotube differentiation involved in skeletal muscle regeneration | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | positive regulation of muscle cell differentiation | | IEA | Ensembl:ENSP00000250003 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | positive regulation of muscle cell differentiation | | ISO | RGD:1353183 | 1624291 | PMID:10672515 | RGD | PMID:10672515 | positive regulation of myoblast fusion | | IEA | Ensembl:ENSP00000250003 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | positive regulation of myoblast fusion | | ISO | RGD:1353183 | 1624291 | PMID:10672515 | RGD | PMID:10672515 | positive regulation of skeletal muscle tissue regeneration | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3692808|PMID:17028574 | RGD | MGI:MGI:3692808 PMID:17028574 | positive regulation of skeletal muscle tissue regeneration | | ISS | UniProtKB:P10085 | | PMID:17028574 | UniProtKB | PMID:17028574 | positive regulation of skeletal muscle tissue regeneration | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | positive regulation of transcription from RNA polymerase II promoter | | ISO | RGD:1332500 | 1624291 | MGI:MGI:1289184 | RGD | MGI:MGI:5295917 PMID:21832073 | positive regulation of transcription from RNA polymerase II promoter | | ISS | UniProtKB:P10085 | | PMID:12486129 | UniProtKB | PMID:12486129 | positive regulation of transcription from RNA polymerase II promoter | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | positive regulation of transcription from RNA polymerase II promoter | | ISO | RGD:1332500 | 1624291 | MGI:MGI:75914|PMID:7659522 | RGD | MGI:MGI:75914 PMID:7659522 | positive regulation of transcription from RNA polymerase II promoter | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3849299|PMID:17940050 | RGD | MGI:MGI:3849299 PMID:17940050 | positive regulation of transcription from RNA polymerase II promoter | | ISO | RGD:1332500 | 1624291 | MGI:MGI:1926387 | RGD | MGI:MGI:3522534 PMID:15572127 | positive regulation of transcription from RNA polymerase II promoter | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3767901|PMID:17855775 | RGD | MGI:MGI:3767901 PMID:17855775 | positive regulation of transcription from RNA polymerase II promoter | | ISO | RGD:1332500 | 1624291 | MGI:MGI:2651740|PMID:12486129 | RGD | MGI:MGI:2651740 PMID:12486129 | positive regulation of transcription, DNA-dependent | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3521604|PMID:15520228 | RGD | MGI:MGI:3521604 PMID:15520228 | positive regulation of transcription, DNA-dependent | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3763850|PMID:17904117 | RGD | MGI:MGI:3763850 PMID:17904117 | positive regulation of transcription, DNA-dependent | | ISO | RGD:1332500 | 1624291 | MGI:MGI:2670853|PMID:12782625 | RGD | MGI:MGI:2670853 PMID:12782625 | regulation of alternative mRNA splicing, via spliceosome | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | regulation of alternative mRNA splicing, via spliceosome | | ISS | UniProtKB:P10085 | | PMID:9525963 | UniProtKB | PMID:9525963 | regulation of alternative mRNA splicing, via spliceosome | | ISO | RGD:1332500 | 1624291 | MGI:MGI:1202143|PMID:9525963 | RGD | MGI:MGI:1202143 PMID:9525963 | regulation of RNA splicing | | ISO | RGD:1353183 | 1624291 | PMID:10672515 | RGD | PMID:10672515 | regulation of transcription from RNA polymerase II promoter | | ISO | RGD:1332500 | 1624291 | MGI:MGI:4367296|PMID:19796622 | RGD | MGI:MGI:4367296 PMID:19796622 | skeletal muscle cell differentiation | | ISO | RGD:1332500 | 1624291 | MGI:MGI:5300631|PMID:22147266 | RGD | MGI:MGI:5300631 PMID:22147266 | skeletal muscle fiber adaptation | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3840749|PMID:19319192 | RGD | MGI:MGI:3840749 PMID:19319192 | skeletal muscle fiber adaptation | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | skeletal muscle fiber development | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3840749|PMID:19319192 | RGD | MGI:MGI:3840749 PMID:19319192 | skeletal muscle fiber development | | IEA | Ensembl:ENSMUSP00000072330 | 1600115 | GO_REF:0000019 | ENSEMBL | GO_REF:0000019 | skeletal muscle tissue development | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3027696|PMID:14762206 | RGD | MGI:MGI:3027696 PMID:14762206 | skeletal muscle tissue development | | ISS | UniProtKB:P10085 | | PMID:14762206 | UniProtKB | PMID:14762206 | skeletal muscle tissue development | | ISO | RGD:1332500 | 1624291 | MGI:MGI:94909 | RGD | MGI:MGI:3586427 PMID:12895031 | skeletal muscle tissue development | | ISO | RGD:1332500 | 1624291 | MGI:MGI:1857221 | RGD | MGI:MGI:3849775 PMID:19531352 | skeletal muscle tissue development | | ISO | RGD:1332500 | 1624291 | MGI:MGI:97252 | RGD | MGI:MGI:64468 PMID:8269513 | skeletal muscle tissue development | | ISO | RGD:1332500 | 1624291 | MGI:MGI:2180395|PMID:12037571 | RGD | MGI:MGI:2180395 PMID:12037571 | striated muscle cell differentiation | | ISO | RGD:1332500 | 1624291 | MGI:MGI:3692808|PMID:17028574 | RGD | MGI:MGI:3692808 PMID:17028574 | striated muscle cell differentiation | | ISS | UniProtKB:P10085 | | PMID:17028574 | UniProtKB | PMID:17028574 | transcription, DNA-dependent | | ISS | UniProtKB:P10085 | | PMID:15520228 | UniProtKB | PMID:15520228 | | 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Molecular Pathway Annotations
Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations| External Database Links | |
| Pathway Interaction Database | C-MYB transcription factor network (PID:200153) |
| Notch-mediated HES/HEY network (PID:200228) | |
| Regulation of nuclear SMAD2/3 signaling (PID:200003) | |
| Regulation of retinoblastoma protein (PID:200223) | |
| Signaling events mediated by HDAC Class III (PID:200025) | |
References - curated| 1. |
Hyatt JP, etal., Am J Physiol Cell Physiol 2003 Nov;285(5):C1161-73. Epub 2003 Jul 2. |
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MGD data from the GO Consortium |
| 3. |
RGD automated data pipeline |
| 4. |
RGD automated import pipeline for gene-chemical interactions |
| 5. |
Zador E, etal., Biochim Biophys Acta 2002 Jun 12;1590(1-3):52-63. |
References - uncurated| PubMed | 11711431 |
| 12037571 | |
| 12477932 | |
| 12486129 | |
| 1321778 | |
| 14762206 | |
| 15520228 | |
| 15921681 | |
| 17028574 | |
| 17034040 | |
| 17761773 | |
| 18849500 | |
| 19170063 | |
| 19723510 | |
| 20069545 | |
| 20956524 | |
| 21258934 | |
| 21668966 | |
| 21858842 | |
| 9525963 |
RGD Disease Portals| Myod1 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| Myod1 (Rattus norvegicus) |
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| MYOD1 (Homo sapiens) |
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| Myod1 (Mus musculus) |
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Position Markers| D1Hmgc6 |
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| D1Bda21 |
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| PMC133998P3 |
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| PMC86965P5 |
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| Myod1 |
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QTLs in Region (RGSC Genome Assembly v3.4)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NM_176079 | (Get FASTA) | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AABR06004835 | (Get FASTA) | Search GEO for Microarray Profiles |
| AAHX01005061 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC127480 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH473979 | (Get FASTA) | Search GEO for Microarray Profiles | |
| M84176 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_176079 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Protein Acc Id: | NP_788268 | ||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_788268 | (Get FASTA) |
| GenBank Protein | AAA41661 | (Get FASTA) |
| AAI27481 | (Get FASTA) | |
| EDM07266 | (Get FASTA) | |
| Q02346 | (Get FASTA) |
Strain Sequence Variants
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External Database Links| Database | Acc Id | Source(s) |
| Ensembl Genes | ENSRNOG00000011306 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000015109 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000015109 | ENTREZGENE, UniProtKB/TrEMBL |
| Entrez Gene | 337868 | ENTREZGENE |
| Gene3D-CATH | HLH_DNA_bd | UniProtKB/Swiss-Prot |
| Germonline | ENSRNOG00000011306 | UniProtKB/Swiss-Prot |
| HomoloGene Group ID | 7857 | ENTREZGENE |
| IMAGE_CLONE | IMAGE:8366406 | IMAGE-MGC_LOAD |
| InterPro | Basic | UniProtKB/Swiss-Prot |
| HLH_DNA_bd | UniProtKB/Swiss-Prot | |
| Myf5 | UniProtKB/Swiss-Prot | |
| IPI | IPI00205974 | UniProtKB/Swiss-Prot |
| KEGG Report | rno:337868 | ENTREZGENE, UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:156574 | IMAGE-MGC_LOAD |
| Pfam | Basic | UniProtKB/Swiss-Prot |
| HLH | UniProtKB/Swiss-Prot | |
| Myf5 | UniProtKB/Swiss-Prot | |
| PROSITE | HLH | UniProtKB/Swiss-Prot |
| SMART | BASIC | UniProtKB/Swiss-Prot |
| HLH | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | HLH_basic | UniProtKB/Swiss-Prot |
| UniGene | Rn.9493 | ENTREZGENE |
| UniProt | A0JPK9_RAT | UniProtKB/TrEMBL |
| MYOD1_RAT | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2004-02-11 | Myod1 | myogenic differentiation 1 | Symbol and Name status set to approved | 2225 | APPROVED |
| More on Myod1 | |
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Entrez Gene |
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Ensembl Gene |
![]() | Genome Browser |
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NCBI Map Viewer |
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Vista |
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Vista + UCSC |
| RGD Object Information | |
| RGD ID: | 631429 |
| Created: | 2003-08-13 |
| Species: | Rattus norvegicus |
| Last Modified: | 2013-04-16 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




