Filip1 (filamin A interacting protein 1) - Rat Genome Database

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Gene: Filip1 (filamin A interacting protein 1) Rattus norvegicus
Analyze
Symbol: Filip1
Name: filamin A interacting protein 1
RGD ID: 628597
Description: Predicted to be involved in modification of postsynaptic structure. Is active in glutamatergic synapse and postsynaptic actin cytoskeleton. Orthologous to human FILIP1 (filamin A interacting protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: filamin-A-interacting protein 1; filamin-interacting protein L-Filip; filamin-interacting protein S-Filip; Filip
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8889,641,509 - 89,836,772 (-)NCBIGRCr8
mRatBN7.2880,761,283 - 80,956,556 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl880,764,604 - 80,922,549 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx886,301,943 - 86,448,554 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0884,579,095 - 84,725,693 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0882,401,723 - 82,548,331 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0887,257,312 - 87,453,432 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl887,256,264 - 87,419,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0886,801,356 - 86,958,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4884,873,131 - 84,902,873 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1884,892,590 - 84,922,320 (-)NCBI
Celera880,499,964 - 80,646,261 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
cisplatin  (ISO)
clothianidin  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
formaldehyde  (ISO)
furan  (EXP)
gentamycin  (EXP)
hydrogen cyanide  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
potassium cyanide  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
temozolomide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (IBA,IEA,ISO)
cytoplasm  (IEA)
glutamatergic synapse  (IDA,IEA,IMP,ISO)
nucleolus  (IEA,ISO)
plasma membrane  (IEA,ISO)
postsynapse  (IDA,IMP)
postsynaptic actin cytoskeleton  (IDA,IMP)
stress fiber  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Filamin A-interacting protein (FILIP) regulates cortical cell migration out of the ventricular zone. Nagano T, etal., Nat Cell Biol 2002 Jul;4(7):495-501.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Filamin A-interacting protein (FILIP) is a region-specific modulator of myosin 2b and controls spine morphology and NMDA receptor accumulation. Yagi H, etal., Sci Rep. 2014 Sep 15;4:6353. doi: 10.1038/srep06353.
Additional References at PubMed
PMID:15509752   PMID:15794127  


Genomics

Comparative Map Data
Filip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8889,641,509 - 89,836,772 (-)NCBIGRCr8
mRatBN7.2880,761,283 - 80,956,556 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl880,764,604 - 80,922,549 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx886,301,943 - 86,448,554 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0884,579,095 - 84,725,693 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0882,401,723 - 82,548,331 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0887,257,312 - 87,453,432 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl887,256,264 - 87,419,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0886,801,356 - 86,958,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4884,873,131 - 84,902,873 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1884,892,590 - 84,922,320 (-)NCBI
Celera880,499,964 - 80,646,261 (-)NCBICelera
Cytogenetic Map8q31NCBI
FILIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38675,291,859 - 75,493,800 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl675,291,859 - 75,493,800 (-)EnsemblGRCh38hg38GRCh38
GRCh37676,001,575 - 76,203,516 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36676,074,520 - 76,260,216 (-)NCBINCBI36Build 36hg18NCBI36
Celera676,411,158 - 76,596,783 (-)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef673,216,562 - 73,402,078 (-)NCBIHuRef
CHM1_1676,183,855 - 76,369,757 (-)NCBICHM1_1
T2T-CHM13v2.0676,468,681 - 76,670,584 (-)NCBIT2T-CHM13v2.0
Filip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39979,708,461 - 79,920,135 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl979,712,376 - 79,920,133 (-)EnsemblGRCm39 Ensembl
GRCm38979,805,018 - 80,012,851 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl979,805,094 - 80,012,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv37979,663,369 - 79,825,689 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36979,601,246 - 79,763,566 (-)NCBIMGSCv36mm8
Celera976,961,597 - 77,115,767 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.83NCBI
Filip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555023,823,872 - 3,903,481 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555023,806,016 - 3,976,013 (-)NCBIChiLan1.0ChiLan1.0
FILIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2595,338,362 - 95,538,462 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1693,215,900 - 93,416,421 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0673,135,086 - 73,334,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1676,426,161 - 76,625,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl676,429,175 - 76,548,549 (-)Ensemblpanpan1.1panPan2
FILIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11236,939,378 - 37,146,607 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1236,942,790 - 37,166,589 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1236,819,013 - 37,025,711 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01237,643,816 - 37,668,087 (-)NCBIROS_Cfam_1.0
Filip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494672,355,184 - 72,518,640 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936788750,934 - 900,714 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936788737,375 - 900,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FILIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl190,427,659 - 90,638,550 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1190,427,529 - 90,643,061 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21101,576,029 - 101,635,660 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FILIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1136,620 - 315,021 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl133,419 - 237,925 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040176,305,116 - 176,541,814 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Filip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248192,380,195 - 2,501,975 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248192,352,322 - 2,562,060 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Filip1
967 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:406
Count of miRNA genes:247
Interacting mature miRNAs:296
Transcripts:ENSRNOT00000015365
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)87531177784531599Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)87531193882925521Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat

Markers in Region
RH139887  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2880,775,779 - 80,775,975 (+)MAPPERmRatBN7.2
Rnor_6.0887,268,483 - 87,268,678NCBIRnor6.0
Rnor_5.0886,812,494 - 86,812,689UniSTSRnor5.0
RGSC_v3.4884,873,438 - 84,873,633UniSTSRGSC3.4
Celera880,500,271 - 80,500,466UniSTS
RH 3.4 Map8919.5UniSTS
Cytogenetic Map8q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 42 8 10 10 4 8 8
Low 3 1 39 23 19 23 1 64 35 37 3
Below cutoff 18 18 18

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000015365   ⟹   ENSRNOP00000015365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl880,775,265 - 80,922,549 (-)Ensembl
Rnor_6.0 Ensembl887,268,176 - 87,419,564 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081437   ⟹   ENSRNOP00000073750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl880,764,604 - 80,922,549 (-)Ensembl
Rnor_6.0 Ensembl887,256,264 - 87,315,955 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087874   ⟹   ENSRNOP00000070886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl880,777,777 - 80,789,451 (-)Ensembl
Rnor_6.0 Ensembl887,268,181 - 87,282,156 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl880,764,604 - 80,922,549 (-)Ensembl
Rnor_6.0 Ensembl887,270,480 - 87,282,156 (-)Ensembl
RefSeq Acc Id: NM_145682   ⟹   NP_663715
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8889,655,699 - 89,802,771 (-)NCBI
mRatBN7.2880,775,473 - 80,922,549 (-)NCBI
Rnor_6.0887,268,176 - 87,419,370 (-)NCBI
Rnor_5.0886,801,356 - 86,958,622 (-)NCBI
RGSC_v3.4884,873,131 - 84,902,873 (-)RGD
Celera880,499,964 - 80,646,261 (-)RGD
Sequence:
RefSeq Acc Id: XM_017595467   ⟹   XP_017450956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8889,655,699 - 89,836,772 (-)NCBI
mRatBN7.2880,775,473 - 80,956,556 (-)NCBI
Rnor_6.0887,267,637 - 87,453,432 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595468   ⟹   XP_017450957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8889,655,699 - 89,803,731 (-)NCBI
mRatBN7.2880,775,473 - 80,923,012 (-)NCBI
Rnor_6.0887,267,637 - 87,419,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595469   ⟹   XP_017450958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8889,655,699 - 89,797,375 (-)NCBI
mRatBN7.2880,775,473 - 80,917,153 (-)NCBI
Rnor_6.0887,267,637 - 87,407,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595471   ⟹   XP_017450960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8889,641,509 - 89,756,348 (-)NCBI
mRatBN7.2880,761,283 - 80,859,316 (-)NCBI
Rnor_6.0887,257,312 - 87,453,431 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595472   ⟹   XP_017450961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8889,641,509 - 89,756,348 (-)NCBI
mRatBN7.2880,761,283 - 80,859,316 (-)NCBI
Rnor_6.0887,257,312 - 87,453,431 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595474   ⟹   XP_017450963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8889,655,699 - 89,716,384 (-)NCBI
mRatBN7.2880,775,473 - 80,836,938 (-)NCBI
Rnor_6.0887,267,637 - 87,333,437 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063264922   ⟹   XP_063120992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8889,655,699 - 89,756,348 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_663715   ⟸   NM_145682
- UniProtKB: Q8K4T4 (UniProtKB/Swiss-Prot),   Q8JZS5 (UniProtKB/Swiss-Prot),   A6I1M6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450960   ⟸   XM_017595471
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017450961   ⟸   XM_017595472
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017450956   ⟸   XM_017595467
- Peptide Label: isoform X2
- UniProtKB: Q8K4T4 (UniProtKB/Swiss-Prot),   Q8JZS5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017450957   ⟸   XM_017595468
- Peptide Label: isoform X3
- UniProtKB: Q8K4T4 (UniProtKB/Swiss-Prot),   Q8JZS5 (UniProtKB/Swiss-Prot),   A6I1M6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450958   ⟸   XM_017595469
- Peptide Label: isoform X3
- UniProtKB: Q8K4T4 (UniProtKB/Swiss-Prot),   Q8JZS5 (UniProtKB/Swiss-Prot),   A6I1M6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450963   ⟸   XM_017595474
- Peptide Label: isoform X6
- UniProtKB: F1LM79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070886   ⟸   ENSRNOT00000087874
RefSeq Acc Id: ENSRNOP00000073750   ⟸   ENSRNOT00000081437
RefSeq Acc Id: ENSRNOP00000015365   ⟸   ENSRNOT00000015365
RefSeq Acc Id: XP_063120992   ⟸   XM_063264922
- Peptide Label: isoform X1
Protein Domains
Cortactin-binding protein-2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K4T4-F1-model_v2 AlphaFold Q8K4T4 1-1212 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696151
Promoter ID:EPDNEW_R6675
Type:single initiation site
Name:Filip1_1
Description:filamin A interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0887,419,531 - 87,419,591EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628597 AgrOrtholog
BioCyc Gene G2FUF-29738 BioCyc
Ensembl Genes ENSRNOG00000011521 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015365 ENTREZGENE
  ENSRNOT00000015365.9 UniProtKB/TrEMBL
  ENSRNOT00000081437.2 UniProtKB/TrEMBL
  ENSRNOT00000087874.2 UniProtKB/TrEMBL
  ENSRNOT00000092781.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.4090 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cortactin-binding_p2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:246776 UniProtKB/Swiss-Prot
NCBI Gene 246776 ENTREZGENE
PANTHER FILAMIN-A-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FILAMIN/GPBP-INTERACTING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CortBP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Filip1 PhenoGen
RatGTEx ENSRNOG00000011521 RatGTEx
UniProt A0A0G2JZ26_RAT UniProtKB/TrEMBL
  A0A0G2K6B7_RAT UniProtKB/TrEMBL
  A0A8I5YBS3_RAT UniProtKB/TrEMBL
  A6I1M6 ENTREZGENE, UniProtKB/TrEMBL
  F1LM79 ENTREZGENE, UniProtKB/TrEMBL
  FLIP1_RAT UniProtKB/Swiss-Prot
  Q8JZS5 ENTREZGENE
  Q8K4T4 ENTREZGENE
UniProt Secondary Q8JZS5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Filip1  filamin A interacting protein 1  Filip  filamin-interacting protein L-Filip  Symbol and Name updated 1299863 APPROVED
2003-02-27 Filip  filamin-interacting protein L-Filip      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_process induces the degradation of COS-7 cells by interacting with Filamin A which is required for cell motility 632688