P2rx4 (purinergic receptor P2X, ligand-gated ion channel 4) - Rat Genome Database

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Gene: P2rx4 (purinergic receptor P2X, ligand-gated ion channel 4) Mus musculus
Analyze
Symbol: P2rx4
Name: purinergic receptor P2X, ligand-gated ion channel 4
RGD ID: 62365
MGI Page MGI
Description: Enables extracellularly ATP-gated monoatomic cation channel activity. Acts upstream of or within several processes, including excitatory postsynaptic potential; nitric oxide biosynthetic process; and vasodilation. Located in apical part of cell. Is active in lysosomal membrane. Is expressed in several structures, including cardiovascular system; gut; immune system; nervous system; and viscerocranium. Orthologous to human P2RX4 (purinergic receptor P2X 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI504491; ATP receptor; AW555605; D5Ertd444; D5Ertd444e; ionotropic purinergic receptor; P2X; P2X purinoceptor 4; P2X4; purinergic receptor P2x4 subunit variant e
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395122,845,581 - 122,867,802 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5122,845,607 - 122,867,801 (+)EnsemblGRCm39 Ensembl
GRCm385122,707,518 - 122,729,739 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,707,544 - 122,729,738 (+)EnsemblGRCm38mm10GRCm38
MGSCv375123,157,566 - 123,179,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365122,968,240 - 122,989,661 (+)NCBIMGSCv36mm8
Celera5119,785,375 - 119,806,787 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP)
6-propyl-2-thiouracil  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
ATP  (EXP,ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[k]fluoranthene  (EXP)
benzoates  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
cisplatin  (EXP,ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
cyproconazole  (EXP)
diclofenac  (ISO)
dieldrin  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenthion  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
ginsenoside C-K  (ISO)
ginsenoside Rb1  (ISO)
ginsenoside Rd  (ISO)
heptachlor  (ISO)
hydroquinone  (ISO)
inulin  (EXP)
ivermectin  (EXP,ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
luteolin  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP)
nitrogen dioxide  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
permethrin  (ISO)
phenobarbital  (EXP)
propiconazole  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
toluene 2,4-diisocyanate  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)
XL147  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic signaling pathway  (ISO)
behavioral response to pain  (ISO)
calcium ion transmembrane transport  (IBA,ISO)
calcium ion transport  (IMP)
cellular response to ATP  (ISO)
cellular response to zinc ion  (ISO)
clathrin-dependent endocytosis  (ISO)
excitatory postsynaptic potential  (IMP)
inorganic cation transmembrane transport  (ISO)
membrane depolarization  (ISO)
monoatomic cation transmembrane transport  (IEA)
monoatomic ion transmembrane transport  (ISO)
monoatomic ion transport  (IEA)
negative regulation of cardiac muscle hypertrophy  (ISO)
neuronal action potential  (ISO)
nitric oxide biosynthetic process  (IDA,IMP)
positive regulation of blood vessel endothelial cell migration  (ISO)
positive regulation of calcium ion transport into cytosol  (ISO)
positive regulation of calcium-mediated signaling  (ISO)
positive regulation of endothelial cell chemotaxis  (ISO)
positive regulation of microglial cell migration  (ISO)
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (ISO)
purinergic nucleotide receptor signaling pathway  (ISO)
regulation of blood pressure  (ISO)
regulation of cardiac muscle contraction  (ISO)
regulation of chemotaxis  (ISO)
regulation of response to drug  (ISO)
regulation of ruffle assembly  (ISO)
regulation of sodium ion transport  (ISO)
relaxation of cardiac muscle  (ISO)
response to ATP  (ISO)
response to axon injury  (ISO)
response to fluid shear stress  (ISO)
response to ischemia  (ISO)
sensory perception of pain  (ISO)
sensory perception of touch  (ISO)
signal transduction  (ISO)
vasodilation  (IMP)

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Regulation of neuronal type genes in congestive heart failure rats. Andersson KB, etal., Acta Physiol (Oxf). 2006 Jan;186(1):17-27.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Microglial P2X4R-evoked pain hypersensitivity is sexually dimorphic in rats. Mapplebeck JCS, etal., Pain. 2018 Sep;159(9):1752-1763. doi: 10.1097/j.pain.0000000000001265.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9931497   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12077552   PMID:12477932   PMID:14610273   PMID:15081800   PMID:15670583  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16327800   PMID:16449800   PMID:16602821   PMID:16943557   PMID:16985003   PMID:17560948   PMID:17675190   PMID:17785580   PMID:17825926  
PMID:17873021   PMID:17934511   PMID:17940064   PMID:17990272   PMID:18240312   PMID:18381417   PMID:18407780   PMID:18641271   PMID:18657557   PMID:18971468   PMID:19036987   PMID:19076210  
PMID:19201994   PMID:19283779   PMID:19304656   PMID:19403602   PMID:19442872   PMID:19515262   PMID:20231374   PMID:20562826   PMID:21267068   PMID:21441897   PMID:21482824   PMID:21677750  
PMID:21749490   PMID:21798232   PMID:21865744   PMID:21873635   PMID:22318986   PMID:22349510   PMID:22378878   PMID:22393055   PMID:22405772   PMID:22451435   PMID:22685336   PMID:22915101  
PMID:23292683   PMID:23428419   PMID:23525041   PMID:23567069   PMID:23604007   PMID:23817978   PMID:23828736   PMID:24123515   PMID:24194600   PMID:24409095   PMID:24572910   PMID:24574541  
PMID:24622244   PMID:24671605   PMID:24818655   PMID:24952961   PMID:24997270   PMID:25239801   PMID:26456657   PMID:26642091   PMID:26648454   PMID:27173846   PMID:27199162   PMID:27402173  
PMID:27477609   PMID:27576299   PMID:27626380   PMID:27863396   PMID:28378742   PMID:28428949   PMID:28751018   PMID:29336303   PMID:29343707   PMID:29382907   PMID:29477921   PMID:29875325  
PMID:29894310   PMID:29973381   PMID:30358443   PMID:31798414   PMID:31869657   PMID:31898158   PMID:31911635   PMID:32086866   PMID:32358018   PMID:32729832   PMID:33125712   PMID:33284579  
PMID:33336163   PMID:33856623   PMID:34285343   PMID:34321999   PMID:34471006   PMID:34769029   PMID:34973190   PMID:35119925   PMID:35165166   PMID:35181718   PMID:35203267   PMID:35254644  
PMID:35610277   PMID:35673908   PMID:35676684   PMID:35699833   PMID:35852606   PMID:36329102   PMID:36499084   PMID:37085966   PMID:37145189   PMID:37652931   PMID:38355795   PMID:38426095  


Genomics

Comparative Map Data
P2rx4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395122,845,581 - 122,867,802 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5122,845,607 - 122,867,801 (+)EnsemblGRCm39 Ensembl
GRCm385122,707,518 - 122,729,739 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,707,544 - 122,729,738 (+)EnsemblGRCm38mm10GRCm38
MGSCv375123,157,566 - 123,179,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365122,968,240 - 122,989,661 (+)NCBIMGSCv36mm8
Celera5119,785,375 - 119,806,787 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.53NCBI
P2RX4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812121,210,129 - 121,234,106 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12121,210,065 - 121,234,106 (+)EnsemblGRCh38hg38GRCh38
GRCh3712121,647,932 - 121,671,909 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612120,132,047 - 120,156,292 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412120,110,383 - 120,134,627NCBI
Celera12121,285,420 - 121,309,664 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12118,657,246 - 118,681,512 (+)NCBIHuRef
CHM1_112121,616,508 - 121,640,746 (+)NCBICHM1_1
T2T-CHM13v2.012121,200,899 - 121,224,872 (+)NCBIT2T-CHM13v2.0
P2rx4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,505,438 - 39,523,349 (-)NCBIGRCr8
mRatBN7.21233,844,609 - 33,862,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1233,844,396 - 33,862,253 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1235,022,338 - 35,040,001 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01235,633,773 - 35,651,436 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01234,686,065 - 34,703,728 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01239,308,022 - 39,325,673 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1239,308,025 - 39,325,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,196,777 - 41,214,428 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,943,900 - 34,961,551 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11234,807,290 - 34,824,939 (-)NCBI
Celera1235,521,444 - 35,539,095 (-)NCBICelera
Cytogenetic Map12q16NCBI
P2rx4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554827,031,874 - 7,039,220 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554827,031,874 - 7,039,026 (-)NCBIChiLan1.0ChiLan1.0
P2RX4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210129,294,836 - 129,319,045 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112129,291,253 - 129,315,419 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012118,807,961 - 118,832,267 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112122,178,668 - 122,202,959 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12122,178,672 - 122,202,959 (+)Ensemblpanpan1.1panPan2
P2RX4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,897,528 - 7,914,279 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl267,898,015 - 7,914,234 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,062,300 - 8,079,042 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0268,155,694 - 8,172,441 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl268,155,705 - 8,172,399 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1268,115,630 - 8,132,371 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,174,205 - 8,190,943 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,130,559 - 8,147,306 (-)NCBIUU_Cfam_GSD_1.0
P2rx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118156,402,015 - 156,417,147 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365583,059,886 - 3,077,451 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365583,062,279 - 3,077,493 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
P2RX4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1431,368,303 - 31,387,905 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11431,368,542 - 31,387,960 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21433,232,162 - 33,251,989 (-)NCBISscrofa10.2Sscrofa10.2susScr3
P2RX4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111116,585,276 - 116,609,401 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11116,585,586 - 116,609,511 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037128,472,594 - 128,496,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
P2rx4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474721,783,381 - 21,796,260 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474721,783,445 - 21,796,501 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in P2rx4
669 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1722
Count of miRNA genes:649
Interacting mature miRNAs:789
Transcripts:ENSMUST00000031429, ENSMUST00000081554, ENSMUST00000132062, ENSMUST00000139631, ENSMUST00000139712, ENSMUST00000142664, ENSMUST00000152337
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse

Markers in Region
AI504491  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385122,728,729 - 122,728,808UniSTSGRCm38
MGSCv375123,178,738 - 123,178,817UniSTSGRCm37
Celera5119,806,472 - 119,806,551UniSTS
Cytogenetic Map5FUniSTS
cM Map565.0UniSTS
Whitehead/MRC_RH51491.65UniSTS
C86270  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385122,728,765 - 122,728,991UniSTSGRCm38
MGSCv375123,178,774 - 123,179,000UniSTSGRCm37
Celera5119,806,508 - 119,806,734UniSTS
Cytogenetic Map5FUniSTS
cM Map565.0UniSTS
Whitehead/MRC_RH51491.65UniSTS
RH137366  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385122,728,807 - 122,729,009UniSTSGRCm38
MGSCv375123,178,816 - 123,179,018UniSTSGRCm37
Celera5119,806,550 - 119,806,752UniSTS
Cytogenetic Map5FUniSTS
cM Map565.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001310718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF089751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF089752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF146516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ251459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ251460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ251461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ251462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM244734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY150918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX417451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX674050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000031429   ⟹   ENSMUSP00000031429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,845,607 - 122,867,801 (+)Ensembl
GRCm38.p6 Ensembl5122,707,544 - 122,729,738 (+)Ensembl
RefSeq Acc Id: ENSMUST00000081554   ⟹   ENSMUSP00000080269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,845,647 - 122,867,107 (+)Ensembl
GRCm38.p6 Ensembl5122,707,584 - 122,729,044 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,862,718 - 122,863,328 (+)Ensembl
GRCm38.p6 Ensembl5122,724,655 - 122,725,265 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139631   ⟹   ENSMUSP00000118163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,845,717 - 122,866,386 (+)Ensembl
GRCm38.p6 Ensembl5122,707,654 - 122,728,323 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,865,727 - 122,866,648 (+)Ensembl
GRCm38.p6 Ensembl5122,727,664 - 122,728,585 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142664   ⟹   ENSMUSP00000117193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,845,717 - 122,866,386 (+)Ensembl
GRCm38.p6 Ensembl5122,707,654 - 122,728,323 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,845,633 - 122,857,540 (+)Ensembl
GRCm38.p6 Ensembl5122,707,570 - 122,719,477 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,845,632 - 122,849,526 (+)Ensembl
GRCm38.p6 Ensembl5122,707,569 - 122,711,463 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198560   ⟹   ENSMUSP00000142849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,845,643 - 122,863,429 (+)Ensembl
GRCm38.p6 Ensembl5122,707,580 - 122,725,366 (+)Ensembl
RefSeq Acc Id: NM_001310718   ⟹   NP_001297647
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,845,607 - 122,867,801 (+)NCBI
GRCm385122,707,544 - 122,729,738 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001310720   ⟹   NP_001297649
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,845,607 - 122,867,801 (+)NCBI
GRCm385122,707,544 - 122,729,738 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011026   ⟹   NP_035156
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,845,607 - 122,867,801 (+)NCBI
GRCm385122,707,544 - 122,729,738 (+)NCBI
MGSCv375123,157,566 - 123,179,053 (+)RGD
Celera5119,785,375 - 119,806,787 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530196   ⟹   XP_006530259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,845,581 - 122,867,802 (+)NCBI
GRCm385122,707,518 - 122,729,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164869   ⟹   XP_036020762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,845,585 - 122,867,802 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001297647 (Get FASTA)   NCBI Sequence Viewer  
  NP_001297649 (Get FASTA)   NCBI Sequence Viewer  
  NP_035156 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530259 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020762 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC95601 (Get FASTA)   NCBI Sequence Viewer  
  AAC95602 (Get FASTA)   NCBI Sequence Viewer  
  AAD32708 (Get FASTA)   NCBI Sequence Viewer  
  AAH05597 (Get FASTA)   NCBI Sequence Viewer  
  AFQ41093 (Get FASTA)   NCBI Sequence Viewer  
  AFR69019 (Get FASTA)   NCBI Sequence Viewer  
  BAE29488 (Get FASTA)   NCBI Sequence Viewer  
  BAE37194 (Get FASTA)   NCBI Sequence Viewer  
  CAB90749 (Get FASTA)   NCBI Sequence Viewer  
  CAB90750 (Get FASTA)   NCBI Sequence Viewer  
  CAB90751 (Get FASTA)   NCBI Sequence Viewer  
  CAB90752 (Get FASTA)   NCBI Sequence Viewer  
  EDL19667 (Get FASTA)   NCBI Sequence Viewer  
  EDL19668 (Get FASTA)   NCBI Sequence Viewer  
  EDL19669 (Get FASTA)   NCBI Sequence Viewer  
  EDL19670 (Get FASTA)   NCBI Sequence Viewer  
  EDL19671 (Get FASTA)   NCBI Sequence Viewer  
  EDL19672 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000031429
  ENSMUSP00000031429.8
  ENSMUSP00000080269
  ENSMUSP00000080269.7
  ENSMUSP00000117193
  ENSMUSP00000117193.3
  ENSMUSP00000118163
  ENSMUSP00000118163.3
  ENSMUSP00000142849.2
GenBank Protein Q9JJX6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_035156   ⟸   NM_011026
- Peptide Label: isoform 1
- UniProtKB: Q9Z257 (UniProtKB/TrEMBL),   Q3TR36 (UniProtKB/TrEMBL),   Q3UCX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530259   ⟸   XM_006530196
- Peptide Label: isoform X1
- UniProtKB: D3YYR5 (UniProtKB/TrEMBL),   Q3TR36 (UniProtKB/TrEMBL),   Q3UCX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297647   ⟸   NM_001310718
- Peptide Label: isoform 2
- UniProtKB: D3Z5U5 (UniProtKB/TrEMBL),   J7IR93 (UniProtKB/TrEMBL),   Q3TR36 (UniProtKB/TrEMBL),   Q3UCX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297649   ⟸   NM_001310720
- Peptide Label: isoform 3
- UniProtKB: Q9Z256 (UniProtKB/TrEMBL),   Q3TR36 (UniProtKB/TrEMBL),   Q3UCX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000142849   ⟸   ENSMUST00000198560
RefSeq Acc Id: ENSMUSP00000118163   ⟸   ENSMUST00000139631
RefSeq Acc Id: ENSMUSP00000031429   ⟸   ENSMUST00000031429
RefSeq Acc Id: ENSMUSP00000080269   ⟸   ENSMUST00000081554
RefSeq Acc Id: ENSMUSP00000117193   ⟸   ENSMUST00000142664
RefSeq Acc Id: XP_036020762   ⟸   XM_036164869
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJX6-F1-model_v2 AlphaFold Q9JJX6 1-388 view protein structure

Promoters
RGD ID:6887990
Promoter ID:EPDNEW_M7446
Type:initiation region
Name:P2rx4_1
Description:Mus musculus purinergic receptor P2X, ligand-gated ion channel4 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,707,570 - 122,707,630EPDNEW
RGD ID:6837992
Promoter ID:MM_KWN:43969
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000031429,   ENSMUST00000077457,   OTTMUST00000050721,   UC008ZLS.1,   UC008ZLT.1,   UC008ZLV.1,   UC008ZLW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365123,157,284 - 123,157,784 (+)MPROMDB
RGD ID:6837989
Promoter ID:MM_KWN:43970
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:OTTMUST00000050722
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365123,173,696 - 123,175,157 (+)MPROMDB
RGD ID:6837990
Promoter ID:MM_KWN:43971
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000050723
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365123,176,956 - 123,178,132 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1338859 AgrOrtholog
Ensembl Genes ENSMUSG00000029470 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031429 ENTREZGENE
  ENSMUST00000031429.14 UniProtKB/TrEMBL
  ENSMUST00000081554 ENTREZGENE
  ENSMUST00000081554.13 UniProtKB/TrEMBL
  ENSMUST00000139631 ENTREZGENE
  ENSMUST00000139631.8 UniProtKB/TrEMBL
  ENSMUST00000142664 ENTREZGENE
  ENSMUST00000142664.3 UniProtKB/TrEMBL
  ENSMUST00000198560.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.490.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  atp-gated p2x4 ion channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P2X4_purnocptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P2X_extracellular_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P2X_purnocptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18438 UniProtKB/TrEMBL
MGD MGI:1338859 ENTREZGENE
NCBI Gene 18438 ENTREZGENE
PANTHER P2X PURINOCEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P2X PURINOCEPTOR 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam P2X_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen P2rx4 PhenoGen
PIRSF P2X_purinoceptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS P2X4RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P2XRECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE P2X_RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JEP2_MOUSE UniProtKB/TrEMBL
  D3YYR5 ENTREZGENE, UniProtKB/TrEMBL
  D3Z5U5 ENTREZGENE, UniProtKB/TrEMBL
  J7IR93 ENTREZGENE
  J9TN51_MOUSE UniProtKB/TrEMBL
  P2RX4_MOUSE UniProtKB/Swiss-Prot
  Q3TR36 ENTREZGENE, UniProtKB/TrEMBL
  Q3UCX4 ENTREZGENE, UniProtKB/TrEMBL
  Q9JJX6 ENTREZGENE
  Q9WUN9_MOUSE UniProtKB/TrEMBL
  Q9Z256 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z257 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary J7IR93 UniProtKB/TrEMBL
  Q9JJX3 UniProtKB/Swiss-Prot
  Q9JJX4 UniProtKB/Swiss-Prot
  Q9JJX5 UniProtKB/Swiss-Prot