Cep170 (centrosomal protein 170) - Rat Genome Database

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Gene: Cep170 (centrosomal protein 170) Rattus norvegicus
Analyze
Symbol: Cep170
Name: centrosomal protein 170
RGD ID: 621868
Description: Predicted to be located in centriole; centrosome; and cytosol. Predicted to be part of centriolar subdistal appendage. Orthologous to human CEP170 (centrosomal protein 170); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein 170kDa; centrosomal protein of 170 kDa; centrosomal protein of 170 kDa-like; Kab; KAB1; KARP-1 binding protein 1; LOC100909664; Rhk1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,201,808 - 91,285,990 (-)NCBIGRCr8
mRatBN7.21388,669,672 - 88,754,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1388,670,358 - 88,732,226 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01394,807,090 - 94,887,448 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1394,807,756 - 94,859,436 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01399,260,145 - 99,340,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41392,502,346 - 92,611,568 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11392,691,921 - 92,753,605 (-)NCBI
Celera1388,250,204 - 88,334,331 (-)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12870657   PMID:21399614   PMID:23213374   PMID:23386061   PMID:24421332   PMID:27623382  


Genomics

Comparative Map Data
Cep170
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,201,808 - 91,285,990 (-)NCBIGRCr8
mRatBN7.21388,669,672 - 88,754,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1388,670,358 - 88,732,226 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01394,807,090 - 94,887,448 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1394,807,756 - 94,859,436 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01399,260,145 - 99,340,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41392,502,346 - 92,611,568 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11392,691,921 - 92,753,605 (-)NCBI
Celera1388,250,204 - 88,334,331 (-)NCBICelera
Cytogenetic Map13q24NCBI
CEP170
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381243,124,428 - 243,255,785 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1243,124,428 - 243,255,348 (-)EnsemblGRCh38hg38GRCh38
GRCh371243,287,730 - 243,418,583 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361241,354,353 - 241,485,331 (-)NCBINCBI36Build 36hg18NCBI36
Celera1216,649,094 - 216,705,506 (-)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1213,733,812 - 213,798,610 (-)NCBIHuRef
HuRef1213,646,948 - 213,649,260 (-)NCBIHuRef
CHM1_11244,560,465 - 244,691,402 (-)NCBICHM1_1
T2T-CHM13v2.01242,535,446 - 242,666,489 (-)NCBIT2T-CHM13v2.0
Cep170
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,556,638 - 176,641,545 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1176,561,219 - 176,641,633 (-)EnsemblGRCm39 Ensembl
GRCm381176,729,072 - 176,813,979 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,733,653 - 176,814,067 (-)EnsemblGRCm38mm10GRCm38
MGSCv371178,663,784 - 178,737,255 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,570,328 - 178,650,795 (-)NCBIMGSCv36mm8
Celera1183,801,883 - 183,875,296 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map182.6NCBI
Cep170
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554066,590,490 - 6,670,077 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554066,588,504 - 6,695,246 (-)NCBIChiLan1.0ChiLan1.0
CEP170
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215,890,964 - 6,021,395 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116,111,383 - 6,243,782 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01218,726,142 - 218,856,585 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11224,107,145 - 224,238,990 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1224,107,145 - 224,238,813 (-)Ensemblpanpan1.1panPan2
CEP170
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1734,264,994 - 34,395,355 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl734,266,147 - 34,364,497 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha733,740,207 - 33,871,706 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0734,091,663 - 34,223,047 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl734,091,156 - 34,222,655 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1733,928,751 - 34,059,700 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0733,945,323 - 34,076,803 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0734,209,953 - 34,341,539 (-)NCBIUU_Cfam_GSD_1.0
Cep170
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934447,197,318 - 47,315,672 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365267,466,731 - 7,549,993 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365267,431,470 - 7,549,979 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP170
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1016,068,542 - 16,191,137 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11016,068,544 - 16,191,277 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21018,524,821 - 18,599,367 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP170
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12580,135,967 - 80,263,764 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2580,134,657 - 80,214,464 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605582,315,167 - 82,443,554 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep170
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477116,117,065 - 16,231,095 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477116,116,197 - 16,232,569 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cep170
377 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat

Markers in Region
RH132374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21152,219,222 - 52,219,382 (-)MAPPERmRatBN7.2
mRatBN7.21388,669,794 - 88,669,981 (+)MAPPERmRatBN7.2
Rnor_6.01394,807,213 - 94,807,399NCBIRnor6.0
Rnor_5.01399,260,268 - 99,260,454UniSTSRnor5.0
RGSC_v3.41392,502,470 - 92,502,656UniSTSRGSC3.4
Celera1388,250,327 - 88,250,513UniSTS
RH 3.4 Map13592.5UniSTS
Cytogenetic Map13q25UniSTS
BF396392  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21388,696,278 - 88,696,408 (+)MAPPERmRatBN7.2
mRatBN7.21388,696,278 - 88,696,408 (-)MAPPERmRatBN7.2
Rnor_6.01343,843,582 - 43,843,711NCBIRnor6.0
Rnor_6.01394,833,697 - 94,833,826NCBIRnor6.0
Rnor_5.01348,938,547 - 48,938,676UniSTSRnor5.0
Rnor_5.01399,286,752 - 99,286,881UniSTSRnor5.0
RGSC_v3.41392,528,954 - 92,529,083UniSTSRGSC3.4
Celera1388,276,811 - 88,276,940UniSTS
RH 3.4 Map13593.0UniSTS
Cytogenetic Map13q25UniSTS
BE108380  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21388,670,189 - 88,670,340 (+)MAPPERmRatBN7.2
Rnor_6.01394,807,608 - 94,807,758NCBIRnor6.0
Rnor_5.01399,260,663 - 99,260,813UniSTSRnor5.0
RGSC_v3.41392,502,865 - 92,503,015UniSTSRGSC3.4
Celera1388,250,722 - 88,250,872UniSTS
RH 3.4 Map13593.4UniSTS
Cytogenetic Map13q25UniSTS
BE115808  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21388,723,606 - 88,723,789 (+)MAPPERmRatBN7.2
mRatBN7.21388,723,606 - 88,723,789 (-)MAPPERmRatBN7.2
Rnor_6.01343,816,191 - 43,816,373NCBIRnor6.0
Rnor_6.01394,861,027 - 94,861,209NCBIRnor6.0
Rnor_5.01348,911,156 - 48,911,338UniSTSRnor5.0
Rnor_5.01399,314,082 - 99,314,264UniSTSRnor5.0
RGSC_v3.41392,556,292 - 92,556,474UniSTSRGSC3.4
Celera1388,304,692 - 88,304,874UniSTS
RH 3.4 Map13593.4UniSTS
Cytogenetic Map13q25UniSTS
BQ205581  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21388,707,132 - 88,707,309 (-)MAPPERmRatBN7.2
mRatBN7.21388,707,132 - 88,707,309 (+)MAPPERmRatBN7.2
Rnor_6.01394,844,551 - 94,844,727NCBIRnor6.0
Rnor_6.01343,832,681 - 43,832,857NCBIRnor6.0
Rnor_5.01348,927,646 - 48,927,822UniSTSRnor5.0
Rnor_5.01399,297,606 - 99,297,782UniSTSRnor5.0
RGSC_v3.41392,539,808 - 92,539,984UniSTSRGSC3.4
Celera1388,287,666 - 88,287,842UniSTS
RH 3.4 Map13591.9UniSTS
Cytogenetic Map13q25UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002724894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB038495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005467   ⟹   ENSRNOP00000005467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,694,889 - 88,732,226 (-)Ensembl
Rnor_6.0 Ensembl1394,832,307 - 94,859,390 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000005532   ⟹   ENSRNOP00000005532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,670,358 - 88,732,224 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079763   ⟹   ENSRNOP00000072465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,670,358 - 88,732,224 (-)Ensembl
Rnor_6.0 Ensembl1394,807,756 - 94,859,436 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103974   ⟹   ENSRNOP00000091063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1388,719,694 - 88,732,226 (-)Ensembl
RefSeq Acc Id: NM_001427216   ⟹   NP_001414145
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,990 (-)NCBI
RefSeq Acc Id: XM_063271993   ⟹   XP_063128063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271994   ⟹   XP_063128064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271995   ⟹   XP_063128065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271996   ⟹   XP_063128066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271997   ⟹   XP_063128067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271998   ⟹   XP_063128068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063271999   ⟹   XP_063128069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272000   ⟹   XP_063128070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272001   ⟹   XP_063128071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272002   ⟹   XP_063128072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272003   ⟹   XP_063128073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272004   ⟹   XP_063128074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272005   ⟹   XP_063128075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272006   ⟹   XP_063128076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272007   ⟹   XP_063128077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272008   ⟹   XP_063128078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,201,808 - 91,285,925 (-)NCBI
RefSeq Acc Id: XM_063272009   ⟹   XP_063128079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81391,210,965 - 91,285,925 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000072465   ⟸   ENSRNOT00000079763
RefSeq Acc Id: ENSRNOP00000005467   ⟸   ENSRNOT00000005467
RefSeq Acc Id: ENSRNOP00000005532   ⟸   ENSRNOT00000005532
RefSeq Acc Id: ENSRNOP00000091063   ⟸   ENSRNOT00000103974
RefSeq Acc Id: NP_001414145   ⟸   NM_001427216
- UniProtKB: A6JGC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128078   ⟸   XM_063272008
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063128077   ⟸   XM_063272007
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063128076   ⟸   XM_063272006
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063128075   ⟸   XM_063272005
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063128074   ⟸   XM_063272004
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063128073   ⟸   XM_063272003
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063128072   ⟸   XM_063272002
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063128070   ⟸   XM_063272000
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063128069   ⟸   XM_063271999
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063128071   ⟸   XM_063272001
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063128068   ⟸   XM_063271998
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063128067   ⟸   XM_063271997
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063128066   ⟸   XM_063271996
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063128065   ⟸   XM_063271995
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063128064   ⟸   XM_063271994
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063128063   ⟸   XM_063271993
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128079   ⟸   XM_063272009
- Peptide Label: isoform X17
Protein Domains
CEP170 C-terminal   FHA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K315-F1-model_v2 AlphaFold A0A0G2K315 1-1139 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621868 AgrOrtholog
BioCyc Gene G2FUF-17212 BioCyc
Ensembl Genes ENSRNOG00000004127 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005467.8 UniProtKB/TrEMBL
  ENSRNOT00000005532.7 UniProtKB/TrEMBL
  ENSRNOT00000079763.2 UniProtKB/TrEMBL
  ENSRNOT00000103974.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
InterPro CEP170_C UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene 171457 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 170 KDA UniProtKB/TrEMBL
  PTHR15715:SF17 UniProtKB/TrEMBL
Pfam CEP170_C UniProtKB/TrEMBL
  FHA UniProtKB/TrEMBL
PhenoGen Cep170 PhenoGen
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004127 RatGTEx
SMART FHA UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A0G2K315_RAT UniProtKB/TrEMBL
  A0A8I6ABD2_RAT UniProtKB/TrEMBL
  A0A8J8XIN3_RAT UniProtKB/TrEMBL
  A6JGC3 ENTREZGENE, UniProtKB/TrEMBL
  A6JGC5_RAT UniProtKB/TrEMBL
  D3ZET9_RAT UniProtKB/TrEMBL
UniProt Secondary F1LNI7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Cep170  centrosomal protein 170  LOC100909664  centrosomal protein of 170 kDa-like  Data merged from RGD:6502250 737654 PROVISIONAL
2012-07-18 Cep170  centrosomal protein 170  Kab  KARP-1 binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100909664  centrosomal protein of 170 kDa-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Kab  KARP-1 binding protein 1  Rhk1    Symbol updated 1299863 APPROVED
2002-08-07 Rhk1  KARP-1 binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL