Foxj1 (forkhead box J1) - Rat Genome Database

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Gene: Foxj1 (forkhead box J1) Rattus norvegicus
Analyze
Symbol: Foxj1 (Ensembl: AABR07030823.1)
Name: forkhead box J1
RGD ID: 621764
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in cellular response to insulin-like growth factor stimulus; response to estradiol; and spermatogenesis. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 43. Orthologous to human FOXJ1 (forkhead box J1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: forkhead box protein J1; hepatocyte nuclear factor 3 forkhead homolog 4; Hfh-4; Hfh4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,065,163 - 102,069,945 (-)NCBIGRCr8
mRatBN7.210101,566,299 - 101,570,370 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,566,304 - 101,570,237 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10106,622,776 - 106,626,846 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,085,863 - 106,089,933 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,487,207 - 101,491,279 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,282,090 - 105,289,396 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010104,946,564 - 104,980,556 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10100,138,561 - 100,142,396 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (IEA,ISO)
axoneme assembly  (IEA,ISO,ISS)
brain development  (IEA,ISO)
cell maturation  (IEA,ISO)
cellular response to insulin-like growth factor stimulus  (IEP)
central tolerance induction  (IEA,ISO)
ciliary basal body organization  (IEA,ISO,ISS)
cilium assembly  (ISO,ISS)
determination of left/right symmetry  (IEA,ISO,ISS)
epithelium development  (ISO)
establishment of apical/basal cell polarity  (IEA,ISO)
glomerular parietal epithelial cell development  (IEA,ISO)
heart development  (IEA,ISO)
humoral immune response  (IEA,ISO)
left/right pattern formation  (ISO)
leukocyte migration  (IEA,ISO)
lung epithelium development  (IEA,ISO)
metanephric part of ureteric bud development  (IEA,ISO)
motile cilium assembly  (IEA,ISO)
negative regulation of B cell activation  (IEA,ISO)
negative regulation of germinal center formation  (IEA,ISO)
negative regulation of humoral immune response mediated by circulating immunoglobulin  (IEA,ISO)
negative regulation of interleukin-6 production  (IEA,ISO)
negative regulation of T cell differentiation in thymus  (IEA,ISO)
negative regulation of T cell proliferation  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
positive regulation of central B cell tolerance induction  (IEA,ISO)
positive regulation of DNA-templated transcription  (ISO,ISS)
positive regulation of lung ciliated cell differentiation  (IEA,ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO,ISS)
protein localization  (IEA,ISO,ISS)
regulation of epithelial cell differentiation  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
response to estradiol  (IEP)
response to organic cyclic compound  (IEP)
spermatogenesis  (IEP)

Cellular Component
nucleus  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Primary structure of hepatocyte nuclear factor/forkhead homologue 4 and characterization of gene expression in the developing respiratory and reproductive epithelium. Hackett BP, etal., Proc Natl Acad Sci U S A 1995 May 9;92(10):4249-53.
4. Temporal and anatomical sensitivities to the aryl hydrocarbon receptor agonist 2,3,7,8-tetrachlorodibenzo-p-dioxin leading to premature acyclicity with age in rats. Jablonska O, etal., Int J Androl. 2010 Jan 4.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Role of foxj1 and estrogen receptor alpha in ciliated epithelial cell differentiation of the neonatal oviduct. Okada A, etal., J Mol Endocrinol. 2004 Jun;32(3):615-25.
8. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Neuroprotective gene expression profiles in ischemic cortical cultures preconditioned with IGF-1 or bFGF. Yoshida E, etal., Brain Res Mol Brain Res. 2004 Nov 24;131(1-2):33-50.
Additional References at PubMed
PMID:9096351   PMID:9530170   PMID:9739041   PMID:10873152   PMID:11724907   PMID:14625387   PMID:14963332   PMID:14996907   PMID:16002694   PMID:16339515   PMID:16574095   PMID:17008636  
PMID:17383628   PMID:17488776   PMID:20539013   PMID:21347518   PMID:22357932   PMID:23515839   PMID:23603178   PMID:25807483   PMID:27660208   PMID:27914912   PMID:27965440   PMID:28666954  
PMID:31630787  


Genomics

Comparative Map Data
Foxj1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,065,163 - 102,069,945 (-)NCBIGRCr8
mRatBN7.210101,566,299 - 101,570,370 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,566,304 - 101,570,237 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10106,622,776 - 106,626,846 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,085,863 - 106,089,933 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,487,207 - 101,491,279 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,282,090 - 105,289,396 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010104,946,564 - 104,980,556 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10100,138,561 - 100,142,396 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
FOXJ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,136,333 - 76,141,245 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,136,333 - 76,141,245 (-)EnsemblGRCh38hg38GRCh38
GRCh371774,132,414 - 74,137,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,644,009 - 71,648,161 (-)NCBINCBI36Build 36hg18NCBI36
Build 341771,644,011 - 71,648,161NCBI
Celera1770,726,321 - 70,731,288 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,561,375 - 69,566,342 (-)NCBIHuRef
CHM1_11774,197,328 - 74,202,294 (-)NCBICHM1_1
T2T-CHM13v2.01777,032,876 - 77,037,788 (-)NCBIT2T-CHM13v2.0
Foxj1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,221,530 - 116,226,331 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,221,530 - 116,226,225 (-)EnsemblGRCm39 Ensembl
GRCm3811116,330,704 - 116,335,499 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,330,704 - 116,335,399 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711116,192,018 - 116,196,668 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,146,794 - 116,151,437 (-)NCBIMGSCv36mm8
Celera11128,095,035 - 128,099,811 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.16NCBI
Foxj1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,127,551 - 6,132,302 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,127,551 - 6,132,302 (+)NCBIChiLan1.0ChiLan1.0
FOXJ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,179,721 - 92,184,680 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,004,916 - 97,009,875 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,084,920 - 70,089,865 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,637,615 - 75,642,571 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,638,634 - 75,641,666 (-)Ensemblpanpan1.1panPan2
FOXJ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,512,898 - 4,517,764 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,513,628 - 4,517,756 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,193,269 - 5,198,295 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,183,268 - 5,188,294 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,183,630 - 5,188,286 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,223,122 - 5,228,148 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,332,544 - 5,337,565 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,393,019 - 5,398,045 (+)NCBIUU_Cfam_GSD_1.0
Foxj1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,122,576 - 5,127,166 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,284,781 - 1,289,361 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,284,799 - 1,288,898 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXJ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,307,374 - 5,312,106 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,307,370 - 5,312,117 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,211,688 - 5,216,414 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXJ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,536,973 - 45,544,331 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,539,510 - 45,544,299 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,286,720 - 16,291,692 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxj1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,025,793 - 6,030,486 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,025,756 - 6,030,487 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Foxj1
8 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091228102104060283Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1097010147104670812Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat

Markers in Region
AU049465  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210101,572,087 - 101,572,235 (+)MAPPERmRatBN7.2
Rnor_6.010105,291,264 - 105,291,411NCBIRnor6.0
Rnor_5.010104,955,781 - 104,955,928UniSTSRnor5.0
Celera10100,144,234 - 100,144,381UniSTS
RH135351  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210101,574,034 - 101,574,238 (+)MAPPERmRatBN7.2
Rnor_6.010105,293,211 - 105,293,414NCBIRnor6.0
Rnor_5.010104,957,728 - 104,957,931UniSTSRnor5.0
Celera10100,146,181 - 100,146,384UniSTS
Foxj1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210101,567,503 - 101,567,764 (+)MAPPERmRatBN7.2
Rnor_6.010105,283,295 - 105,283,554NCBIRnor6.0
Rnor_5.010104,947,769 - 104,948,028UniSTSRnor5.0
Celera10100,139,766 - 100,140,026UniSTS


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000072687   ⟹   ENSRNOP00000092642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10101,566,304 - 101,570,237 (-)Ensembl
RefSeq Acc Id: NM_053832   ⟹   NP_446284
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810102,065,170 - 102,069,241 (-)NCBI
mRatBN7.210101,566,299 - 101,570,370 (-)NCBI
Rnor_6.010105,282,090 - 105,289,396 (-)NCBI
Rnor_5.010104,946,564 - 104,980,556 (-)NCBI
Celera10100,138,561 - 100,142,396 (-)RGD
Sequence:
RefSeq Acc Id: XM_063268304   ⟹   XP_063124374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810102,065,163 - 102,069,945 (-)NCBI
Protein Sequences
Protein RefSeqs NP_446284 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124374 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC37671 (Get FASTA)   NCBI Sequence Viewer  
  EDM06665 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092642
  ENSRNOP00000092642.1
GenBank Protein Q63247 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446284   ⟸   NM_053832
- UniProtKB: Q63247 (UniProtKB/Swiss-Prot),   A0A8I6GK97 (UniProtKB/TrEMBL),   A6HKW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000092642   ⟸   ENSRNOT00000072687
RefSeq Acc Id: XP_063124374   ⟸   XM_063268304
- Peptide Label: isoform X1
Protein Domains
Fork-head

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63247-F1-model_v2 AlphaFold Q63247 1-421 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621764 AgrOrtholog
BioCyc Gene G2FUF-22613 BioCyc
Ensembl Genes ENSRNOG00000046001 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072687 ENTREZGENE
  ENSRNOT00000072687.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FH_FOXJ1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fork_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOXJ1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116557 UniProtKB/Swiss-Prot
NCBI Gene 116557 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN J1 UniProtKB/Swiss-Prot
  FORKHEAD BOX PROTEIN J1 UniProtKB/Swiss-Prot
  FORKHEAD BOX PROTEIN J1 UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN J1 UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Foxj1 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046001 RatGTEx
SMART SM00339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6GK97 ENTREZGENE, UniProtKB/TrEMBL
  A6HKW0 ENTREZGENE, UniProtKB/TrEMBL
  FOXJ1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Foxj1  forkhead box J1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Foxj1  forkhead box J1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression 2.4 kb mRNA expressed in lung, testis, oviduct, brain, peripheral nervous system, and trachea 728378
gene_process may play a role in regulating stage-specific gene expression and cell-fate determination during lung development and spermatogenesis 728378
gene_product member of the winged helix/forkhead family of transcription factors 728378