Clic4 (chloride intracellular channel 4) - Rat Genome Database

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Gene: Clic4 (chloride intracellular channel 4) Mus musculus
Analyze
Symbol: Clic4
Name: chloride intracellular channel 4 (Ensembl:chloride intracellular channel 4 (mitochondrial))
RGD ID: 62149
MGI Page MGI
Description: Predicted to enable chloride channel activity. Involved in keratinocyte differentiation. Acts upstream of or within several processes, including endothelial cell morphogenesis; vacuolar acidification; and vasculature development. Located in mitochondrion. Is expressed in brain; skin; and spleen. Orthologous to human CLIC4 (chloride intracellular channel 4).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: chloride intracellular channel 4 (mitochondrial); chloride intracellular channel protein 4; D0Jmb3; mc3s; mc3s5; mc3s5/mtCLIC; mtCL; mtCLIC; TU-74
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm8388  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394134,941,280 - 135,000,071 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4134,941,280 - 135,000,125 (-)EnsemblGRCm39 Ensembl
GRCm384135,213,969 - 135,272,760 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4135,213,969 - 135,272,814 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,769,884 - 134,828,675 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364134,486,045 - 134,544,836 (-)NCBIMGSCv36mm8
Celera4133,399,961 - 133,460,231 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map467.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (EXP)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[ghi]perylene  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
butanal  (ISO)
carbon nanotube  (EXP)
chloroprene  (ISO)
choline  (EXP)
cisplatin  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
Didecyldimethylammonium  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
fenpyroximate  (ISO)
fenvalerate  (ISO)
flavonoids  (ISO)
folic acid  (EXP)
gemcitabine  (ISO)
genistein  (ISO)
gentamycin  (ISO)
graphite  (ISO)
hydrogen peroxide  (EXP)
Indeno[1,2,3-cd]pyrene  (EXP)
indometacin  (ISO)
inulin  (EXP)
ivermectin  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (ISO)
mercury dichloride  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
Methylazoxymethanol acetate  (ISO)
methylmercury chloride  (ISO)
methylmercury(1+)  (ISO)
microcystin RR  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nitrofen  (ISO)
Nivalenol  (EXP)
obeticholic acid  (ISO)
ochratoxin A  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylephrine  (ISO)
picoxystrobin  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
pyrimidifen  (ISO)
raloxifene  (ISO)
rimonabant  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
streptozocin  (EXP)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thifluzamide  (ISO)
thioacetamide  (ISO)
tributylstannane  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
undecane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1602141   PMID:8889548   PMID:10349636   PMID:10593946   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11997498   PMID:12477932   PMID:12520002   PMID:12958156  
PMID:14610078   PMID:14610273   PMID:15102471   PMID:15489334   PMID:15745951   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16358817   PMID:16403837   PMID:17151600   PMID:17636002  
PMID:17967808   PMID:18614015   PMID:18799693   PMID:19197003   PMID:19448624   PMID:19478202   PMID:20504765   PMID:21388519   PMID:21469130   PMID:21677750   PMID:21873635   PMID:22474389  
PMID:22613027   PMID:24154525   PMID:24503951   PMID:24708746   PMID:24886590   PMID:25830089   PMID:26276819   PMID:26786190   PMID:27536941   PMID:27582103   PMID:27852828   PMID:28576828  
PMID:28779175   PMID:29382714   PMID:30457570   PMID:32325033   PMID:32554809   PMID:33601422   PMID:33879602   PMID:34839533   PMID:35042858   PMID:35863434   PMID:37317855  


Genomics

Comparative Map Data
Clic4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394134,941,280 - 135,000,071 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4134,941,280 - 135,000,125 (-)EnsemblGRCm39 Ensembl
GRCm384135,213,969 - 135,272,760 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4135,213,969 - 135,272,814 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,769,884 - 134,828,675 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364134,486,045 - 134,544,836 (-)NCBIMGSCv36mm8
Celera4133,399,961 - 133,460,231 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map467.19NCBI
CLIC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,745,447 - 24,844,321 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl124,745,382 - 24,844,321 (+)EnsemblGRCh38hg38GRCh38
GRCh37125,071,938 - 25,170,812 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,944,435 - 25,043,346 (+)NCBINCBI36Build 36hg18NCBI36
Build 34124,817,153 - 24,916,064NCBI
Celera123,398,865 - 23,495,461 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef123,328,646 - 23,424,410 (+)NCBIHuRef
CHM1_1125,184,596 - 25,284,364 (+)NCBICHM1_1
T2T-CHM13v2.0124,582,409 - 24,679,995 (+)NCBIT2T-CHM13v2.0
Clic4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85152,737,371 - 152,797,118 (-)NCBIGRCr8
mRatBN7.25147,453,702 - 147,513,455 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5147,453,712 - 147,513,452 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5150,157,499 - 150,214,039 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05151,928,975 - 151,985,428 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05151,913,767 - 151,970,313 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05153,568,937 - 153,625,669 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5153,568,745 - 153,625,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05157,338,299 - 157,394,464 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45154,005,244 - 154,066,883 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15154,015,282 - 154,076,922 (-)NCBI
Celera5145,866,637 - 145,923,113 (-)NCBICelera
Cytogenetic Map5q36NCBI
Clic4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554524,479,783 - 4,534,115 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554524,479,783 - 4,534,115 (+)NCBIChiLan1.0ChiLan1.0
CLIC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21202,090,577 - 202,186,135 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11201,191,251 - 201,289,737 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0123,947,030 - 24,042,139 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1124,975,304 - 25,017,904 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,975,260 - 25,017,904 (+)Ensemblpanpan1.1panPan2
CLIC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,903,653 - 74,974,103 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,906,948 - 74,974,032 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,477,775 - 71,548,015 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,465,388 - 75,535,965 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,465,443 - 75,535,994 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,288,187 - 72,358,703 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,294,973 - 73,365,679 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,299,369 - 74,369,911 (-)NCBIUU_Cfam_GSD_1.0
Clic4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505843,846,369 - 43,886,310 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364749,664,872 - 9,711,036 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLIC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl682,401,188 - 82,483,724 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1682,401,041 - 82,483,038 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2676,224,518 - 76,244,851 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLIC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120107,855,046 - 107,952,529 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660338,406,443 - 8,502,483 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clic4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247649,088,352 - 9,149,194 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Clic4
2602 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1011
Count of miRNA genes:615
Interacting mature miRNAs:731
Transcripts:ENSMUST00000037099, ENSMUST00000143370
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301793Tlsr3_mthymic lymphoma suppressor region 3 (mouse)Not determined4129465811136864536Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4142082Psds2_mpsoriasis-like skin disease severity 2 (mouse)Not determined4133154678137617995Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse

Markers in Region
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF102578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU459014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU459015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M88757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000037099   ⟹   ENSMUSP00000041453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4134,941,280 - 135,000,125 (-)Ensembl
GRCm38.p6 Ensembl4135,213,969 - 135,272,814 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4134,950,775 - 135,000,125 (-)Ensembl
GRCm38.p6 Ensembl4135,223,464 - 135,272,814 (-)Ensembl
RefSeq Acc Id: NM_013885   ⟹   NP_038913
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,941,280 - 135,000,071 (-)NCBI
GRCm384135,213,969 - 135,272,760 (-)ENTREZGENE
MGSCv374134,769,884 - 134,828,675 (-)RGD
Celera4133,399,961 - 133,460,231 (-)RGD
cM Map4 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_038913 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF19055 (Get FASTA)   NCBI Sequence Viewer  
  AAH46384 (Get FASTA)   NCBI Sequence Viewer  
  AAH52890 (Get FASTA)   NCBI Sequence Viewer  
  BAC27301 (Get FASTA)   NCBI Sequence Viewer  
  BAC33601 (Get FASTA)   NCBI Sequence Viewer  
  BAE30017 (Get FASTA)   NCBI Sequence Viewer  
  BAE30455 (Get FASTA)   NCBI Sequence Viewer  
  BAE31037 (Get FASTA)   NCBI Sequence Viewer  
  BAE31089 (Get FASTA)   NCBI Sequence Viewer  
  BAE31990 (Get FASTA)   NCBI Sequence Viewer  
  BAE33450 (Get FASTA)   NCBI Sequence Viewer  
  BAE35054 (Get FASTA)   NCBI Sequence Viewer  
  BAE36049 (Get FASTA)   NCBI Sequence Viewer  
  BAE39023 (Get FASTA)   NCBI Sequence Viewer  
  BAE41124 (Get FASTA)   NCBI Sequence Viewer  
  BAE41399 (Get FASTA)   NCBI Sequence Viewer  
  BAE42130 (Get FASTA)   NCBI Sequence Viewer  
  BAE42336 (Get FASTA)   NCBI Sequence Viewer  
  BAE42784 (Get FASTA)   NCBI Sequence Viewer  
  BAE43045 (Get FASTA)   NCBI Sequence Viewer  
  BAE43120 (Get FASTA)   NCBI Sequence Viewer  
  CAJ18487 (Get FASTA)   NCBI Sequence Viewer  
  EDL29989 (Get FASTA)   NCBI Sequence Viewer  
  EDL29990 (Get FASTA)   NCBI Sequence Viewer  
  EDL29991 (Get FASTA)   NCBI Sequence Viewer  
  EDL29992 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000041453
  ENSMUSP00000041453.9
GenBank Protein Q9QYB1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_038913   ⟸   NM_013885
- UniProtKB: Q8BMG5 (UniProtKB/Swiss-Prot),   Q9QYB1 (UniProtKB/Swiss-Prot),   Q543N5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000041453   ⟸   ENSMUST00000037099
Protein Domains
GST C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QYB1-F1-model_v2 AlphaFold Q9QYB1 1-253 view protein structure

Promoters
RGD ID:6835065
Promoter ID:MM_KWN:40126
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000022374,   OTTMUST00000022375
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,828,486 - 134,829,377 (-)MPROMDB
RGD ID:6885056
Promoter ID:EPDNEW_M5979
Type:initiation region
Name:Clic4_1
Description:Mus musculus chloride intracellular channel 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384135,272,763 - 135,272,823EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1352754 AgrOrtholog
Ensembl Genes ENSMUSG00000037242 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000037099 ENTREZGENE
  ENSMUST00000037099.9 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1050.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutaredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CLIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutathione-S-Trfase_C-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutathione-S-Trfase_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutathione_S-Trfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutathione_S-Trfase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:29876 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1352754 ENTREZGENE
NCBI Gene 29876 ENTREZGENE
PANTHER CHLORIDE INTRACELLULAR CHANNEL PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHLORIDE INTRACELLULAR CHANNEL PROTEIN 6-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GST_C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GST_N_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Clic4 PhenoGen
PRINTS INTCLCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GST_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47616 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52833 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CLIC4_MOUSE UniProtKB/Swiss-Prot
  Q3U8I1_MOUSE UniProtKB/TrEMBL
  Q543N5 ENTREZGENE, UniProtKB/TrEMBL
  Q8BMG5 ENTREZGENE
  Q9QYB1 ENTREZGENE
UniProt Secondary Q8BMG5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Clic4  chloride intracellular channel 4  Clic4  chloride intracellular channel 4 (mitochondrial)  Symbol and/or name change 5135510 APPROVED