Csnk1g2 (casein kinase 1, gamma 2)

Gene: Csnk1g2 (casein kinase 1, gamma 2) Rattus norvegicus

Analyze

Symbol:

Csnk1g2

Name:

casein kinase 1, gamma 2

RGD ID:

621407

Description:

Enables protein serine/threonine kinase activity. Predicted to be involved in endocytosis; positive regulation of canonical Wnt signaling pathway; and signal transduction. Predicted to be located in cell cortex. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Orthologous to human CSNK1G2 (casein kinase 1 gamma 2); PARTICIPATES IN Hedgehog signaling pathway; p53 signaling pathway; INTERACTS WITH 4,4'-sulfonyldiphenol; ammonium chloride; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

casein kinase 1 gamma 2 isoform; casein kinase I; casein kinase I isoform gamma-2; CKI-gamma 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CSNK1G2 (casein kinase 1 gamma 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Csnk1g2 (casein kinase 1, gamma 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Csnk1g2 (casein kinase 1 gamma 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CSNK1G2 (casein kinase 1 gamma 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CSNK1G2 (casein kinase 1 gamma 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Csnk1g2 (casein kinase 1 gamma 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CSNK1G2 (casein kinase 1 gamma 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CSNK1G2 (casein kinase 1 gamma 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Csnk1g2 (casein kinase 1 gamma 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	BCL7C (BAF chromatin remodeling complex subunit BCL7C)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CSNK1G2 (casein kinase 1 gamma 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Csnk1g2 (casein kinase 1, gamma 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	csnk1g2a (casein kinase 1, gamma 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	csnk1g2b (casein kinase 1, gamma 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	YCK1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YCK3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	csnk-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	gish	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YCK2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	csnk1g2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,727,430 - 9,746,341 (-)	NCBI		GRCr8
mRatBN7.2	7	9,076,739 - 9,095,082 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	9,076,740 - 9,095,052 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,954,932 - 11,973,278 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,830,444 - 13,848,790 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,696,523 - 11,714,865 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,944,957 - 11,963,268 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,944,958 - 11,963,268 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	12,112,482 - 12,130,793 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	10,587,247 - 10,620,696 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	10,587,649 - 10,593,409 (-)	NCBI
Celera	7	7,259,087 - 7,265,303 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cyclic hematopoiesis (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

progressive myoclonus epilepsy 9 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxynon-2-enal (ISO)

5-aza-2'-deoxycytidine (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

C60 fullerene (EXP)

cadmium dichloride (EXP)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

dibutyl phthalate (EXP,ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

hydrogen peroxide (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methidathion (ISO)

methylmercury chloride (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (IBA,IEA)

positive regulation of canonical Wnt signaling pathway (IBA,IEA)

protein autophosphorylation (IDA)

protein phosphorylation (IDA)

signal transduction (IBA)

Wnt signaling pathway (IEA)

Cellular Component

cell cortex (IEA)

cytoplasm (IEA)

nucleus (IBA,IEA)

plasma membrane (IBA,IEA)

Molecular Function

ATP binding (IEA)

protein binding (ISO)

protein serine kinase activity (IEA)

protein serine/threonine kinase activity (IBA,IDA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (IEA,ISO)

p53 signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11.	Casein kinase I gamma subfamily. Molecular cloning, expression, and characterization of three mammalian isoforms and complementation of defects in the Saccharomyces cerevisiae YCK genes.	Zhai L, etal., J Biol Chem 1995 May 26;270(21):12717-24.

Additional References at PubMed

PMID:15489334	PMID:19946888	PMID:25500533

Genomics

Comparative Map Data

Csnk1g2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,727,430 - 9,746,341 (-)	NCBI		GRCr8
mRatBN7.2	7	9,076,739 - 9,095,082 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	9,076,740 - 9,095,052 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,954,932 - 11,973,278 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,830,444 - 13,848,790 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,696,523 - 11,714,865 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,944,957 - 11,963,268 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,944,958 - 11,963,268 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	12,112,482 - 12,130,793 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	10,587,247 - 10,620,696 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	10,587,649 - 10,593,409 (-)	NCBI
Celera	7	7,259,087 - 7,265,303 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

CSNK1G2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	1,941,172 - 1,981,338 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	1,941,172 - 1,981,338 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	1,941,171 - 1,981,337 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	1,892,161 - 1,932,337 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	1,920,718 - 1,932,334	NCBI
Celera	19	1,875,252 - 1,915,336 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	1,713,063 - 1,753,602 (+)	NCBI		HuRef
CHM1_1	19	1,940,768 - 1,980,926 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	1,912,501 - 1,953,837 (+)	NCBI		T2T-CHM13v2.0

Csnk1g2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	80,458,465 - 80,476,605 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	80,458,672 - 80,476,583 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	80,622,676 - 80,640,771 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	80,622,838 - 80,640,749 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	80,085,525 - 80,103,516 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,025,967 - 80,043,870 (+)	NCBI		MGSCv36	mm8
Celera	10	81,640,604 - 81,658,595 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Csnk1g2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	6,087,159 - 6,103,412 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	6,087,159 - 6,103,413 (-)	NCBI	ChiLan1.0	ChiLan1.0

CSNK1G2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	6,312,024 - 6,357,864 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	5,542,970 - 5,588,268 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	19	1,959,324 - 1,961,718 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

CSNK1G2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	57,015,019 - 57,042,269 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	57,015,614 - 57,040,694 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	56,809,430 - 56,835,434 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	57,747,258 - 57,773,360 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	57,747,260 - 57,762,467 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	56,804,410 - 56,830,373 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	57,284,242 - 57,310,243 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	57,485,156 - 57,511,202 (-)	NCBI		UU_Cfam_GSD_1.0

Csnk1g2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	216,686,519 - 216,700,060 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	1,140,619 - 1,147,282 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	1,140,332 - 1,148,265 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSNK1G2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	76,573,987 - 76,609,384 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	76,573,979 - 76,609,631 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	77,279,223 - 77,303,826 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSNK1G2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	1,743,018 - 1,781,844 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	1,743,061 - 1,783,406 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	6,988,618 - 7,045,396 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csnk1g2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	6,833,114 - 6,839,914 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	6,832,157 - 6,859,244 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Csnk1g2
44 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	55
Interacting mature miRNAs:	68
Transcripts:	ENSRNOT00000025266
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	664270	26029351	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat

Markers in Region

RH142309

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	9,076,835 - 9,077,012 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	11,945,054 - 11,945,230	NCBI	Rnor6.0
Rnor_5.0	7	12,112,579 - 12,112,755	UniSTS	Rnor5.0
RGSC_v3.4	7	10,587,343 - 10,587,519	UniSTS	RGSC3.4
Celera	7	7,259,183 - 7,259,359	UniSTS
Cytogenetic Map	7	q11	UniSTS

RH128131

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	9,076,804 - 9,077,012 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	11,945,023 - 11,945,230	NCBI	Rnor6.0
Rnor_5.0	7	12,112,548 - 12,112,755	UniSTS	Rnor5.0
RGSC_v3.4	7	10,587,312 - 10,587,519	UniSTS	RGSC3.4
Celera	7	7,259,152 - 7,259,359	UniSTS
Cytogenetic Map	7	q11	UniSTS

BF412593

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	9,080,724 - 9,080,855 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	11,948,943 - 11,949,073	NCBI	Rnor6.0
Rnor_5.0	7	12,116,468 - 12,116,598	UniSTS	Rnor5.0
RGSC_v3.4	7	10,591,232 - 10,591,362	UniSTS	RGSC3.4
Celera	7	7,263,072 - 7,263,202	UniSTS
RH 3.4 Map	7	2.8	UniSTS
Cytogenetic Map	7	q11	UniSTS

UniSTS:532272

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	9,076,798 - 9,077,417 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	11,945,017 - 11,945,635	NCBI	Rnor6.0
Rnor_5.0	7	12,112,542 - 12,113,160	UniSTS	Rnor5.0
Celera	7	7,259,146 - 7,259,764	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High											1
Medium	3	43	56	40	19	40	8	11	74	35	40	11	8
Low			1	1		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_023102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_593259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC072533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U22297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000025266 ⟹ ENSRNOP00000025266

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	9,076,740 - 9,095,052 (-)	Ensembl
Rnor_6.0 Ensembl	7	11,944,958 - 11,963,268 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080342 ⟹ ENSRNOP00000072196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	9,076,740 - 9,095,052 (-)	Ensembl
Rnor_6.0 Ensembl	7	11,944,958 - 11,963,268 (-)	Ensembl

RefSeq Acc Id:

NM_001033870 ⟹ NP_001029042

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,431 - 9,745,741 (-)	NCBI
mRatBN7.2	7	9,076,740 - 9,095,052 (-)	NCBI
Rnor_6.0	7	11,944,958 - 11,963,268 (-)	NCBI
Rnor_5.0	7	12,112,482 - 12,130,793 (-)	NCBI
RGSC_v3.4	7	10,587,247 - 10,620,696 (-)	RGD
Celera	7	7,259,087 - 7,265,303 (-)	NCBI

Sequence:

show sequence

CGCTGGCGGCGTAAGGCGCGCGGGGGCTCCGCGGAGCGGGCGCGGGGGAGCGGCGGAGCCCGGC
CCTCTCCGCCGAACATGCCGAGGCCGGCCCCTGTAGCGCGGGAGCCGGAGCGGGGGCGGGAGCC
GGAGCGCGAACGTGCGCGGGGCCCGGAGCGGGGGACGCCGCGCTGCTGAGCTCGGCCACCGCCG
CCCGCGGGCCCCAGGCGGGGCGCAGCTGGGCACCACGAGATTTAAGGCGGTGGGACCTGTTGGC
AGAATGTCTTCTCTCTCTGCAAGTGACCCTGAGGCCACCAAGATGAGCACCTCGGCCGGGCCTG
TGAGCGTACCCGGGTGTCAATAGCCGGGAGCCAAGGGGCCACCAGGCGCAATGGTGTACTAGGC
CGGGCGCGAGCTCAGGTTTCGCACTCGGATCTCACGGCAGAGTCACCGTGGAGAGGCCAGGGTA
CCACAAACTTATGGATTTTGACAAGAAAGGAGGGAAGGGGGAGTTGGAGGAGGGCAGGAGAATG
TCCAAAACCGGCACGAATCGGAGCAACCACGGCGTCCGCAATTCGGGGACCAGCTCAGGGGTCC
TGATGGTGGGCCCCAACTTCCGAGTCGGCAAGAAGATAGGCTGTGGGAATTTCGGGGAGCTTCG
CCTAGGAAAGAACCTGTATACAAATGAGTACGTGGCTATCAAACTGGAGCCCATCAAGTCCCGG
GCCCCGCAGCTGCATCTGGAGTACCGCTTCTACAAGCAGCTCAGCACCACAGAAGGTGTCCCTC
AGGTCTACTACTTCGGCCCTTGCGGGAAGTACAACGCCATGGTGCTGGAGCTGCTGGGGCCCAG
CCTGGAGGACCTGTTCGACCTGTGCGACCGCACCTTCACGCTAAAGACGGTGCTGATGATCGCC
ATCCAGCTGATCACGCGCATGGAGTATGTGCATACCAAGAGCCTCATCTACCGCGACGTGAAGC
CTGAGAACTTCCTGGTTGGGCGGCCGGGCAGCAAGCGGCAGCACTCCATCCACATCATCGACTT
TGGCCTGGCCAAGGAGTACATCGACCCTGAGACCAAGAAGCACATCCCGTACCGCGAGCACAAG
AGCCTGACGGGCACGGCGCGCTACATGAGCATCAACACGCACCTGGGCAAGGAGCAGAGCCGCC
GGGACGACCTGGAAGCGCTAGGGCACATGTTCATGTACTTCCTACGCGGCAGTCTGCCCTGGCA
GGGGCTCAAGGCGGACACGCTGAAGGAACGCTACCAGAAGATTGGTGATACCAAGCGTGCCACG
CCAATCGAGGTGCTGTGTGAGAGCTTCCCGGAGGAGATGGCCACCTACTTGCGCTATGTGCGGC
GCCTAGACTTCTTTGAGAAGCCAGACTACGACTACCTGAGGAAGCTCTTCACCGACCTCTTCGA
CCGCAGCGGCTACGTGTTTGACTACGAGTATGACTGGGCCGGCAAGCCCCTGCCGACACCTATC
GGCACCGTCCATCCTGATGTGCCCTCCCAGCCGCCACATCGTGACAAAGCTCAGCTCCACACCA
AGAACCAGGCGCTGAACTCCACCAATGGAGAGCTGAACACAGACGACCCCACCGCGGGCCACTC
CAACGCCCCCATCGCGGCCCCTGCAGAAGTAGAGGTGGCGGATGAAACCAAGTGCTGCTGCTTC
TTCAAGAGGAGGAAGAGAAAATCGCTGCAGCGACATAAGTGAGGGTGGGTGCAGCCGCTGCCCA
AGATCCCCAAGCGGGTGTCTAGGAAGCTGGTAGTGTCCTCAGTGGCGTGGGGCTCCTTGGCCCA
CCTGCAGGCACCGTCTTTCAGGACTTGGGGTCACTTCCTTCACACAGGACTTTGGCGGAAATCT
CTACACCCGTGTCTCGTCATCCCCTTCGAGAGCATTAACTATTTAAAACCAGGAGAGAAGCGCT
GCGCCGTCCCTGCTGCGCCCCTGTTAGCTCATAAAGTCCAGCTTGTCCCCTCAATCCAAAGGCC
ATTTTCTCGAGGGGGGGCAGGCCCGGGCATGGGCATCACACGGGGAGGCCTCAGCCACCAAAGG
GGAGGCAAGTGCACTACCACAATGCTGCACCAAAGCCGGGGCGGAGCGTGGGATGGTCACTGCA
CAGGGACTGGTATGGGCCCTACAGAGCCAGGGCGGCCGTGACCCGTGTCCCTGCGTGCAGGGCC
CATGGGACAGAATCGCCTTAACGCCTGGCCCGGGGCCGCAGAGAGGCGGTCCCACGGGAGGGCC
AGGCCTTGGTCGCGGGAGCTGAGTTCTTGCTTTACGTCGTGTACAGAAATGAACTTATGTTTCT
CTGGCGCTTCCTTGAAGCCGTAGAGTTTAGGGGCTTTTTTTAAAAAAAAAGAATAAAAGAAAAT
AAAACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_023102 ⟹ NP_075590

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,431 - 9,745,741 (-)	NCBI
mRatBN7.2	7	9,076,740 - 9,095,052 (-)	NCBI
Rnor_6.0	7	11,944,958 - 11,963,268 (-)	NCBI
Rnor_5.0	7	12,112,482 - 12,130,793 (-)	NCBI
RGSC_v3.4	7	10,587,247 - 10,620,696 (-)	RGD
Celera	7	7,259,087 - 7,265,303 (-)	NCBI

Sequence:

show sequence

CGCTGGCGGCGTAAGGCGCGCGGGGGCTCCGCGGAGCGGGCGCGGGGGAGCGGCGGAGCCCGGC
CCTCTCCGCCGAACATGCCGAGGCCGGCCCCTGTAGCGCGGGAGCCGGAGCGGGGGCGGGAGCC
GGAGCGCGAACGTGCGCGGGGCCCGGAGCGGGGGACGCCGCGCTGCTGAGCTCGGCCACCGCCG
CCCGCGGGCCCCAGGCGGGGCGCAGCTGGGCACCACGAGATTTAAGGCGGTGGGACCTGTTGGC
AGAATGTCTTCTCTCTCTGCAAGTGACCCTGAGGCCACCAAGATGAGCACCTCGGCCGGGCCTG
TGAGCGTACCCGGGTGTCAATAGCCGGGAGCCAAGGGGCCACCAGGCGCAATGGTGTACTAGGC
CGGGCGCGAGCTCAGGTTTCGCACTCGGATCTCACGGCAGAGTCACCGTGGAGAGGCCAGGGTA
CCACAAACTTATGGATTTTGACAAGAAAGGAGGGAAGGGGGAGTTGGAGGAGGGCAGGAGAATG
TCCAAAACCGGCACGAATCGGAGCAACCACGGCGTCCGCAATTCGGGGACCAGCTCAGGGGTCC
TGATGGTGGGCCCCAACTTCCGAGTCGGCAAGAAGATAGGCTGTGGGAATTTCGGGGAGCTTCG
CCTAGGAAAGAACCTGTATACAAATGAGTACGTGGCTATCAAACTGGAGCCCATCAAGTCCCGG
GCCCCGCAGCTGCATCTGGAGTACCGCTTCTACAAGCAGCTCAGCACCACAGGTGTCCCTCAGG
TCTACTACTTCGGCCCTTGCGGGAAGTACAACGCCATGGTGCTGGAGCTGCTGGGGCCCAGCCT
GGAGGACCTGTTCGACCTGTGCGACCGCACCTTCACGCTAAAGACGGTGCTGATGATCGCCATC
CAGCTGATCACGCGCATGGAGTATGTGCATACCAAGAGCCTCATCTACCGCGACGTGAAGCCTG
AGAACTTCCTGGTTGGGCGGCCGGGCAGCAAGCGGCAGCACTCCATCCACATCATCGACTTTGG
CCTGGCCAAGGAGTACATCGACCCTGAGACCAAGAAGCACATCCCGTACCGCGAGCACAAGAGC
CTGACGGGCACGGCGCGCTACATGAGCATCAACACGCACCTGGGCAAGGAGCAGAGCCGCCGGG
ACGACCTGGAAGCGCTAGGGCACATGTTCATGTACTTCCTACGCGGCAGTCTGCCCTGGCAGGG
GCTCAAGGCGGACACGCTGAAGGAACGCTACCAGAAGATTGGTGATACCAAGCGTGCCACGCCA
ATCGAGGTGCTGTGTGAGAGCTTCCCGGAGGAGATGGCCACCTACTTGCGCTATGTGCGGCGCC
TAGACTTCTTTGAGAAGCCAGACTACGACTACCTGAGGAAGCTCTTCACCGACCTCTTCGACCG
CAGCGGCTACGTGTTTGACTACGAGTATGACTGGGCCGGCAAGCCCCTGCCGACACCTATCGGC
ACCGTCCATCCTGATGTGCCCTCCCAGCCGCCACATCGTGACAAAGCTCAGCTCCACACCAAGA
ACCAGGCGCTGAACTCCACCAATGGAGAGCTGAACACAGACGACCCCACCGCGGGCCACTCCAA
CGCCCCCATCGCGGCCCCTGCAGAAGTAGAGGTGGCGGATGAAACCAAGTGCTGCTGCTTCTTC
AAGAGGAGGAAGAGAAAATCGCTGCAGCGACATAAGTGAGGGACTTTGGCGGAAATCTCTACAC
CCGTGTCTCGTCATCCCCTTCGAGAGCATTAACTATTTAAAACCAGGAGAGAAGCGCTGCGCCG
TCCCTGCTGCGCCCCTGTTAGCTCATAAAGTCCAGCTTGTCCCCTCAATCCAAAGGCCATTTTC
TCGAGGGGGGGCAGGCCCGGGCATGGGCATCACACGGGGAGGCCTCAGCCACCAAAGGGGAGGC
AAGTGCACTACCACAATGCTGCACCAAAGCCGGGGCGGAGCGTGGGATGGTCACTGCACAGGGA
CTGGTATGGGCCCTACAGAGCCAGGGCGGCCGTGACCCGTGTCCCTGCGTGCAGGGCCCATGGG
ACAGAATCGCCTTAACGCCTGGCCCGGGGCCGCAGAGAGGCGGTCCCACGGGAGGGCCAGGCCT
TGGTCGCGGGAGCTGAGTTCTTGCTTTACGTCGTGTACAGAAATGAACTTATGTTTCTCTGGCG
CTTCCTTGAAGCCGTAGAGTTTAGGGGCTTTTTTTAAAAAAAAAGAATAAAAGAAAATAAAACC
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006241001 ⟹ XP_006241063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,745,773 (-)	NCBI
mRatBN7.2	7	9,076,739 - 9,095,082 (-)	NCBI
Rnor_6.0	7	11,944,957 - 11,963,267 (-)	NCBI
Rnor_5.0	7	12,112,482 - 12,130,793 (-)	NCBI

Sequence:

show sequence

GCTGGCGGCGTAAGGCGCGCGGGGGCTCCGCGGAGCGGGCGCGGGGGAGCGGCGGAGCCCGGCC
CTCTCCGCCGAACATGCCGAGGCCGGCCCCTGTAGCGCGGGAGCCGGAGCGGGGGCCCGAGCCG
GAGCGCGAACGTGCGCGGGGCCCGGAGCGGGGGACGCCGCGCTGCTGAGCTCGGCCACCGCCGC
CCGCGGGCCCCAGGCGGGGCGCAGCTGGGCACCACGAGATTTAAGGCGGTGGGACCTGTTGGCA
GAATGTCTTCTCTCTCTGCAAGTGACCCTGAGGCCACCAAGATGAGCACCTCGGCCGGGCCTGT
GAGCGTACCCGGGTGTCAATAGCCGGGAGCCAAGGGGCCACCAGGCGCAATGGTGTACTAGGCC
GGGCGCGAGCTCAGGTTTCGCACTCGGATCTCACGGCAGAGTCACCGTGGAGAGGCCAGGGTAC
CACAAACTTATGGATTTTGACAAGAAAGGAGGGAAGGGGGAGTTGGAGGAGGGCAGGAGAATGT
CCAAAACCGGCACGAATCGGAGCAACCACGGCGTCCGCAATTCGGGGACCAGCTCAGGGGTCCT
GATGGTGGGCCCCAACTTCCGAGTCGGCAAGAAGATAGGCTGTGGGAATTTCGGGGAGCTTCGC
CTAGGAAAGAACCTGTATACAAATGAGTACGTGGCTATCAAACTGGAGCCCATCAAGTCCCGGG
CCCCGCAGCTGCATCTGGAGTACCGCTTCTACAAGCAGCTCAGCACCACAGGTGAGGACACGGG
CCGGGGGGCGGCACTCCTAGGCGGGCAGGGGCTCCGCACACCCAGCATCGATGTTTCCTTGGCA
GAAGGTGTCCCTCAGGTCTACTACTTCGGCCCTTGCGGGAAGTACAACGCCATGGTGCTGGAGC
TGCTGGGGCCCAGCCTGGAGGACCTGTTCGACCTGTGCGACCGCACCTTCACGCTAAAGACGGT
GCTGATGATCGCCATCCAGCTGATCACGCGCATGGAGTATGTGCATACCAAGAGCCTCATCTAC
CGCGACGTGAAGCCTGAGAACTTCCTGGTTGGGCGGCCGGGCAGCAAGCGGCAGCACTCCATCC
ACATCATCGACTTTGGCCTGGCCAAGGAGTACATCGACCCTGAGACCAAGAAGCACATCCCGTA
CCGCGAGCACAAGAGCCTGACGGGCACGGCGCGCTACATGAGCATCAACACGCACCTGGGCAAG
GAGCAGAGCCGCCGGGACGACCTGGAAGCGCTAGGGCACATGTTCATGTACTTCCTACGCGGCA
GTCTGCCCTGGCAGGGGCTCAAGGCGGACACGCTGAAGGAACGCTACCAGAAGATTGGTGATAC
CAAGCGTGCCACGCCAATCGAGGTGCTGTGTGAGAGCTTCCCGGAGGAGATGGCCACCTACTTG
CGCTATGTGCGGCGCCTAGACTTCTTTGAGAAGCCAGACTACGACTACCTGAGGAAGCTCTTCA
CCGACCTCTTCGACCGCAGCGGCTACGTGTTTGACTACGAGTATGACTGGGCCGGCAAGCCCCT
GCCGACACCTATCGGCACCGTCCATCCTGATGTGCCCTCCCAGCCGCCACATCGTGACAAAGCT
CAGCTCCACACCAAGAACCAGGCGCTGAACTCCACCAATGGAGAGCTGAACACAGACGACCCCA
CCGCGGGCCACTCCAACGCCCCCATCGCGGCCCCTGCAGAAGTAGAGGTGGCGGATGAAACCAA
GTGCTGCTGCTTCTTCAAGAGGAGGAAGAGAAAATCGCTGCAGCGACATAAGTGAGGGACTTTG
GCGGAAATCTCTACACCCGTGTCTCGTCATCCCCTTCGAGAGCATTAACTATTTAAAACCAGGA
GAGAAGCGCTGCGCCGTCCCTGCTGCGCCCCTGTTAGCTCATAAAGTCCAGCTTGTCCCCTCAA
TCCAAAGGCCATTTTCTCGAGGGGGGGCAGGCCCGGGCATGGGCATCACACGGGGAGGCCTCAG
CCACCAAAGGGGAGGCAAGTGCACTACCACAATGCTGCACCAAAGCCGGGGCGGAGCGTGGGAT
GGTCACTGCACAGGGACTGGTATGGGCCCTACAGAGCCAGGGCGGCCGTGACCCGTGTCCCTGC
GTGCAGGGCCCATGGGACAGAATCGCCTTAACGCCTGGCCCGGGGCCGCAGAGAGGCGGTCCCA
CGGGAGGGCCAGGCCTTGGTCGCGGGAGCTGAGTTCTTGCTTTACGTCGTGTACAGAAATGAAC
TTATGTTTCTCTGGCGCTTCCTTGAAGCCGTAGAGTTTAGGGGCTTTTTTTAAAAAAAAAGAAT
AAAAGAAAATAAAACCCTC

hide sequence

RefSeq Acc Id:

XM_006241003 ⟹ XP_006241065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,733,189 (-)	NCBI
mRatBN7.2	7	9,076,739 - 9,082,498 (-)	NCBI
Rnor_6.0	7	11,944,957 - 11,950,735 (-)	NCBI
Rnor_5.0	7	12,112,482 - 12,130,793 (-)	NCBI

Sequence:

show sequence

CCTGTGTGTCCCGTCTCCAGTCTGTCACTAGGCCCCTCAGGAGGAAGGAGGGAATCCGGCTCTG
TGGCCATCAGGTCCACTGTTCCCAGACCTCGCCTGCAGTGGTCATGTGAGGGGAGTCTGGCCAC
ACTGAGGGGACAGCAATGTCATGGGCTCCGGTTCCCTTCCTCCCCCAGAGCAGAGTATTGTAGC
ATTCCCTGGCCTGCTCAAGCCAGCACAGGTCCCAGCCTGGTGCAGGGCCTCTGCAGCCCTGGGC
CGGGGCTGTGCTTTCTGTGGTCTCGGACCTCAGCCTTCTGCCTGTTGCTTCAGGTGCCTCCTGA
GCCCAACTGTGAAAGATGGTTCCTACCTACATAATAAGACACCAAATTGCAACCTTGGAGCCAG
CCATTGTGGCCATGTCTTTAATTCCAGCAATTGGAGGCAGAGGTAGGCCAGACAGATCTCTGAG
TTGGAGGCCGGCTTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAAAAACAAGAAAAGAAAAAG
TACAGCCCTGAATACATACATCCATGCATGGGCTCCTAGCCAGCAGTGCCTTCCCAGGGTCCTG
GCCTCAGACAGCGGCTCACGAGTCAGGTCCTGGTACAGATCACCGTGCAGGCACTGAGGTGTGT
GACCCCTGAAAGACCCTGCAAGGAGCTGTGTGCAGGTGCTTGTTGCTTCCTCTGCTTCCTGCTA
GGGGTGGAGCCTGTGCACTTTGACCTTTGTTAGAGTGCAGGGCCAGCCCCCTCACCACTGGACC
CGCTCAGAGTTCCTGTCAGCTGTTTACACCCTATCCTGGGTTAGGCCTAGCACCTCAGTGGGGA
GGGATGTGTGCTTACTGGGAGCCAGGCCAGGAGTCCAGCCCCAGCTGTGAACCAGCCTCACGCC
TCAGGATGCTGACCCAGGTGTTCTTCATAAGGGCAGGCTAGCCTGGGCTACACAGTAAGAACTT
GTCTCCCTCCCCCCACCCCTGCAAGGTTGTTAGAGTGAGCCTTGAAGGAGCTAATTTCCCTGGT
GAGCCTGAGCTGCTTCCCTGCCTGAGCCCTCACCCTCCAACTCCCCTCCTGCCTTCCTGACTCT
GAAGCCTGGTGGTCTGGCCTCGAGTGGCTGAGCGCCTTGGATCTGTGGAGTGATCATTGTTGAT
TAAATTGGGAAGTCGAAGCCCCCGTCTGTGCAGCTTTCTTCCTCTGACTATGGGGCCACACTTG
GTCCCTTTGTGTGCCCTTCTCCCTTTTCTTTGTAAGAAAGGGTCCCTCTGTGTAGCTCTAGCTG
TCCTGGAACTTGCTCTGCATCCCTGGCTCCCCAGGACTCAGAGCTCTGCCTGCCTCTGTCTCCC
GAGTGCTGGGATGGGAGGTGTGCTCCTCTGCGCCTAGCCCTCCCCCACCCACCCCATTCTTTAG
AGTTTTGTTTTGCCTGTGTGTGTCGCTGCACTGTGCACTGTGTACGTGCCTGGGGAGGCTGGAA
GAGGGCTCTGGGTCCCCTAGAATTAAGTTAGGGACTGTTGTGAGCCCCCATGTGTGTGCCGAGA
ACTGAGCGCTGAACTCCCCAGTCTCCCACACATTTAAGAAAGTTTCAATGTGTATATGTTGGGG
AATAGACATGCCACACACACACACCTTGTGAGGGTCAGGAACAACTTTGGGGGTTCTCATTTCT
CTCCTTCCTGTGGATTCTGGGAGCTTGAGCTGGGGCTGGCAGCTCGCATCTGGTGCTGGCCTCT
AAGATGGAGACACGTGCATCCTCGGGGCCAGCACGCCTGCCCACACTGACCTGCTGCTACACCT
TCAGCCTGCGTGCTCTGACACGCCTCAGGTGCTGGGCGCGAGCAGAAGAGCAGGGTTGGATCAG
TGAGAAGCCCCGGGGAGAAGCCACGCAAGAGTGACCTGAGGTGGTTAAAGTTAGACAAATGCAG
ACATTAGCAGCTGCAGCTGAGGAGACTAGAGCTCCCTTGGGGAAGCCTGACCTCCAGCATGAAG
GAGACCTGAGCAGCCCTCCAGATGAGAGCCGGCTCCACACAGTATGCAGGCCCCGCTCCCTTGC
AAGGGACGCCCCTTGGCTGCTCACCCAGATCATGAGGTGCCTGCAGGGTGAGAGGTAGAAACCA
GACCTTGGCAACCTGGACTGTCACTGAGCCACCTCGTAGAAGACACTTCATGACGCTTCACCTT
ACACAACCTGGCATACCCTTGGTGGGTCACAGGAGATGGGAGGCCATCACTGTCAGACAGAGAC
AAGCCAGCTAGAAGTGGCCTCTGAACTCGGCCTGGTATGAGAGCTGCGTGCTGATGTCCTTGGC
AGCTGGACAGTGATGGAGACACCCAGGACAAGCAGGGAGTGAGCATCCCTCCGGGGGGCTGGAC
ACCACCCCAAAGGGCTACCTAGGCCTCAGGCAGACTGAGGGAGCTCTTCACAAGTTTGTGGCTC
TGCTGCCCTGTGCAGGGCCTTTCCCTGAAGGCGTGGTGGGTGTAGCCCTTGGGTGTGGCCCTGG
AGGTGGTCTTTGTGACTAGTGATGCTGAGGTGAGCATAGGGTGCTTAGGGGCTGTGCTGTGCTC
AGACAGCAGATGGGAGCCCTGCTAGGAGAACCTGACTGGGGCTGAGCCAGCTGCTGGATTCACC
AGGGTGGGGTTAGCATGGGAACTGCGCACTCCATCCCCTCAGCCAGCCATCTTGGTAGAAAGAA
CCTGTATACAAATGAGTACGTGGCTATCAAACTGGAGCCCATCAAGTCCCGGGCCCCGCAGCTG
CATCTGGAGTACCGCTTCTACAAGCAGCTCAGCACCACAGAAGGTGTCCCTCAGGTCTACTACT
TCGGCCCTTGCGGGAAGTACAACGCCATGGTGCTGGAGCTGCTGGGGCCCAGCCTGGAGGACCT
GTTCGACCTGTGCGACCGCACCTTCACGCTAAAGACGGTGCTGATGATCGCCATCCAGCTGATC
ACGCGCATGGAGTATGTGCATACCAAGAGCCTCATCTACCGCGACGTGAAGCCTGAGAACTTCC
TGGTTGGGCGGCCGGGCAGCAAGCGGCAGCACTCCATCCACATCATCGACTTTGGCCTGGCCAA
GGAGTACATCGACCCTGAGACCAAGAAGCACATCCCGTACCGCGAGCACAAGAGCCTGACGGGC
ACGGCGCGCTACATGAGCATCAACACGCACCTGGGCAAGGAGCAGAGCCGCCGGGACGACCTGG
AAGCGCTAGGGCACATGTTCATGTACTTCCTACGCGGCAGTCTGCCCTGGCAGGGGCTCAAGGC
GGACACGCTGAAGGAACGCTACCAGAAGATTGGTGATACCAAGCGTGCCACGCCAATCGAGGTG
CTGTGTGAGAGCTTCCCGGAGGAGATGGCCACCTACTTGCGCTATGTGCGGCGCCTAGACTTCT
TTGAGAAGCCAGACTACGACTACCTGAGGAAGCTCTTCACCGACCTCTTCGACCGCAGCGGCTA
CGTGTTTGACTACGAGTATGACTGGGCCGGCAAGCCCCTGCCGACACCTATCGGCACCGTCCAT
CCTGATGTGCCCTCCCAGCCGCCACATCGTGACAAAGCTCAGCTCCACACCAAGAACCAGGCGC
TGAACTCCACCAATGGAGAGCTGAACACAGACGACCCCACCGCGGGCCACTCCAACGCCCCCAT
CGCGGCCCCTGCAGAAGTAGAGGTGGCGGATGAAACCAAGTGCTGCTGCTTCTTCAAGAGGAGG
AAGAGAAAATCGCTGCAGCGACATAAGTGAGGGTGGGTGCAGCCGCTGCCCAAGATCCCCAAGC
GGGTGTCTAGGAAGCTGGTAGTGTCCTCAGTGGCGTGGGGCTCCTTGGCCCACCTGCAGGCACC
GTCTTTCAGGACTTGGGGTCACTTCCTTCACACAGGACTTTGGCGGAAATCTCTACACCCGTGT
CTCGTCATCCCCTTCGAGAGCATTAACTATTTAAAACCAGGAGAGAAGCGCTGCGCCGTCCCTG
CTGCGCCCCTGTTAGCTCATAAAGTCCAGCTTGTCCCCTCAATCCAAAGGCCATTTTCTCGAGG
GGGGGCAGGCCCGGGCATGGGCATCACACGGGGAGGCCTCAGCCACCAAAGGGGAGGCAAGTGC
ACTACCACAATGCTGCACCAAAGCCGGGGCGGAGCGTGGGATGGTCACTGCACAGGGACTGGTA
TGGGCCCTACAGAGCCAGGGCGGCCGTGACCCGTGTCCCTGCGTGCAGGGCCCATGGGACAGAA
TCGCCTTAACGCCTGGCCCGGGGCCGCAGAGAGGCGGTCCCACGGGAGGGCCAGGCCTTGGTCG
CGGGAGCTGAGTTCTTGCTTTACGTCGTGTACAGAAATGAACTTATGTTTCTCTGGCGCTTCCT
TGAAGCCGTAGAGTTTAGGGGCTTTTTTTAAAAAAAAAGAATAAAAGAAAATAAAACCCTC

hide sequence

RefSeq Acc Id:

XM_008765130 ⟹ XP_008763352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,745,773 (-)	NCBI
mRatBN7.2	7	9,076,739 - 9,095,082 (-)	NCBI
Rnor_6.0	7	11,944,957 - 11,963,267 (-)	NCBI

Sequence:

show sequence

GCTGGCGGCGTAAGGCGCGCGGGGGCTCCGCGGAGCGGGCGCGGGGGAGCGGCGGAGCCCGGCC
CTCTCCGCCGAACATGCCGAGGCCGGCCCCTGTAGCGCGGGAGCCGGAGCGGGGGCCCGAGCCG
GAGCGCGAACGTGCGCGGGGCCCGGAGCGGGGGACGCCGCGCTGCTGAGCTCGGCCACCGCCGC
CCGCGGGCCCCAGGCGGGGCGCAGCTGGGCACCACGAGATTTAAGGCGGTGGGACCTGTTGGCA
GAATGTCTTCTCTCTCTGCAAGTGACCCTGAGGCCACCAAGATGAGCACCTCGGCCGGGCCTGT
GAGCGTACCCGGGTGTCAATAGCCGGGAGCCAAGGGGCCACCAGGCGCAATGGTGTACTAGGCC
GGGCGCGAGCTCAGGTTTCGCACTCGGATCTCACGGCAGAGTCACCGTGGAGAGGCCAGGGTAC
CACAAACTTATGGATTTTGACAAGAAAGGAGGGAAGGGGGAGTTGGAGGAGGGCAGGAGAATGT
CCAAAACCGGCACGAATCGGAGCAACCACGGCGTCCGCAATTCGGGGACCAGCTCAGGGGTCCT
GATGGTGGGCCCCAACTTCCGAGTCGGCAAGAAGATAGGCTGTGGGAATTTCGGGGAGCTTCGC
CTAGGAAAGAACCTGTATACAAATGAGTACGTGGCTATCAAACTGGAGCCCATCAAGTCCCGGG
CCCCGCAGCTGCATCTGGAGTACCGCTTCTACAAGCAGCTCAGCACCACAGGTGAGGACACGGG
CCGGGGGGCGGCACTCCTAGGCGGGCAGGGGCTCCGCACACCCAGCATCGATGTTTCCTTGGCA
GAAGGTGTCCCTCAGGTCTACTACTTCGGCCCTTGCGGGAAGTACAACGCCATGGTGCTGGAGC
TGCTGGGGCCCAGCCTGGAGGACCTGTTCGACCTGTGCGACCGCACCTTCACGCTAAAGACGGT
GCTGATGATCGCCATCCAGCTGATCACGCGCATGGAGTATGTGCATACCAAGAGCCTCATCTAC
CGCGACGTGAAGCCTGAGAACTTCCTGGTTGGGCGGCCGGGCAGCAAGCGGCAGCACTCCATCC
ACATCATCGACTTTGGCCTGGCCAAGGAGTACATCGACCCTGAGACCAAGAAGCACATCCCGTA
CCGCGAGCACAAGAGCCTGACGGGCACGGCGCGCTACATGAGCATCAACACGCACCTGGGCAAG
GAGCAGAGCCGCCGGGACGACCTGGAAGCGCTAGGGCACATGTTCATGTACTTCCTACGCGGCA
GTCTGCCCTGGCAGGGGCTCAAGGCGGACACGCTGAAGGAACGCTACCAGAAGATTGGTGATAC
CAAGCGTGCCACGCCAATCGAGGTGCTGTGTGAGAGCTTCCCGGAGGAGATGGCCACCTACTTG
CGCTATGTGCGGCGCCTAGACTTCTTTGAGAAGCCAGACTACGACTACCTGAGGAAGCTCTTCA
CCGACCTCTTCGACCGCAGCGGCTACGTGTTTGACTACGAGTATGACTGGGCCGGCAAGCCCCT
GCCGACACCTATCGGCACCGTCCATCCTGATGTGCCCTCCCAGCCGCCACATCGTGACAAAGCT
CAGCTCCACACCAAGAACCAGGCGCTGAACTCCACCAATGGAGAGCTGAACACAGACGACCCCA
CCGCGGGCCACTCCAACGCCCCCATCGCGGCCCCTGCAGAAGTAGAGGTGGCGGATGAAACCAA
GTGCTGCTGCTTCTTCAAGAGGAGGAAGAGAAAATCGCTGCAGCGACATAAGTGAGGGTGGGTG
CAGCCGCTGCCCAAGATCCCCAAGCGGGTGTCTAGGAAGCTGGTAGTGTCCTCAGTGGCGTGGG
GCTCCTTGGCCCACCTGCAGGCACCGTCTTTCAGGACTTGGGGTCACTTCCTTCACACAGGACT
TTGGCGGAAATCTCTACACCCGTGTCTCGTCATCCCCTTCGAGAGCATTAACTATTTAAAACCA
GGAGAGAAGCGCTGCGCCGTCCCTGCTGCGCCCCTGTTAGCTCATAAAGTCCAGCTTGTCCCCT
CAATCCAAAGGCCATTTTCTCGAGGGGGGGCAGGCCCGGGCATGGGCATCACACGGGGAGGCCT
CAGCCACCAAAGGGGAGGCAAGTGCACTACCACAATGCTGCACCAAAGCCGGGGCGGAGCGTGG
GATGGTCACTGCACAGGGACTGGTATGGGCCCTACAGAGCCAGGGCGGCCGTGACCCGTGTCCC
TGCGTGCAGGGCCCATGGGACAGAATCGCCTTAACGCCTGGCCCGGGGCCGCAGAGAGGCGGTC
CCACGGGAGGGCCAGGCCTTGGTCGCGGGAGCTGAGTTCTTGCTTTACGTCGTGTACAGAAATG
AACTTATGTTTCTCTGGCGCTTCCTTGAAGCCGTAGAGTTTAGGGGCTTTTTTTAAAAAAAAAG
AATAAAAGAAAATAAAACCCTC

hide sequence

RefSeq Acc Id:

XM_039079871 ⟹ XP_038935799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,745,772 (-)	NCBI
mRatBN7.2	7	9,076,739 - 9,095,082 (-)	NCBI

RefSeq Acc Id:

XM_039079872 ⟹ XP_038935800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,733,190 (-)	NCBI
mRatBN7.2	7	9,076,739 - 9,082,500 (-)	NCBI

RefSeq Acc Id:

XM_063264228 ⟹ XP_063120298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,745,771 (-)	NCBI

RefSeq Acc Id:

XM_063264229 ⟹ XP_063120299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,738,372 (-)	NCBI

RefSeq Acc Id:

XM_063264230 ⟹ XP_063120300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,744,749 (-)	NCBI

RefSeq Acc Id:

XM_063264231 ⟹ XP_063120301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,734,821 (-)	NCBI

RefSeq Acc Id:

XM_063264232 ⟹ XP_063120302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,738,379 (-)	NCBI

RefSeq Acc Id:

XM_063264233 ⟹ XP_063120303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,746,341 (-)	NCBI

RefSeq Acc Id:

XM_063264234 ⟹ XP_063120304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,738,369 (-)	NCBI

RefSeq Acc Id:

XM_063264235 ⟹ XP_063120305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,738,377 (-)	NCBI

RefSeq Acc Id:

XM_063264236 ⟹ XP_063120306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,738,369 (-)	NCBI

RefSeq Acc Id:

XM_063264237 ⟹ XP_063120307

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,733,189 (-)	NCBI

RefSeq Acc Id:

XM_063264238 ⟹ XP_063120308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,733,189 (-)	NCBI

RefSeq Acc Id:

XM_063264239 ⟹ XP_063120309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,733,189 (-)	NCBI

RefSeq Acc Id:

XM_063264240 ⟹ XP_063120310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,727,430 - 9,733,190 (-)	NCBI

RefSeq Acc Id:

XR_593259

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,728,282 - 9,745,773 (-)	NCBI
mRatBN7.2	7	9,076,739 - 9,095,082 (-)	NCBI
Rnor_6.0	7	11,944,957 - 11,963,267 (-)	NCBI

Sequence:

show sequence

GCTGGCGGCGTAAGGCGCGCGGGGGCTCCGCGGAGCGGGCGCGGGGGAGCGGCGGAGCCCGGCC
CTCTCCGCCGAACATGCCGAGGCCGGCCCCTGTAGCGCGGGAGCCGGAGCGGGGGCCCGAGCCG
GAGCGCGAACGTGCGCGGGGCCCGGAGCGGGGGACGCCGCGCTGCTGAGCTCGGCCACCGCCGC
CCGCGGGCCCCAGGCGGGGCGCAGCTGGGCACCACGAGATTTAAGGCGGTGGGACCTGTTGGCA
GAATGTCTTCTCTCTCTGCAAGTGACCCTGAGGCCACCAAGATGAGCACCTCGGCCGGGCCTGT
GAGCGTACCCGGGTGTCAATAGCCGGGAGCCAAGGGGCCACCAGGCGCAATGGTGTACTAGGCC
GGGCGCGAGCTCAGGTTTCGCACTCGGATCTCACGGCAGAGTCACCGTGGAGAGGCCAGGGTAC
CACAAACTTATGGATTTTGACAAGAAAGGAGGGAAGGGGGAGTTGGAGGAGGGCAGGAGAATGT
CCAAAACCGGCACGAATCGGAGCAACCACGGCGTCCGCAATTCGGGGACCAGCTCAGGGGTCCT
GATGGTGGGCCCCAACTTCCGAGTCGGCAAGAAGATAGGCTGTGGGAATTTCGGGGAGCTTCGC
CTAGGAAAGAACCTGTATACAAATGAGTACGTGGCTATCAAACTGGAGCCCATCAAGTCCCGGG
CCCCGCAGCTGCATCTGGAGTACCGCTTCTACAAGCAGCTCAGCACCACAGAAGGTGTCCCTCA
GGTCTACTACTTCGGCCCTTGCGGGAAGTACAACGCCATGGTGCTGGAGCTGCTGGGGCCCAGC
CTGGAGGACCTGTTCGACCTGTGCGACCGCACCTTCACGCTAAAGACGGTGCTGATGATCGCCA
TCCAGCTGATCACGCGCATGGAGTATGTGCATACCAAGAGCCTCATCTACCGCGACGTGAAGCC
TGAGAACTTCCTGGTTGGGCGGCCGGGCAGCAAGCGGCAGCACTCCATCCACATCATCGACTTT
GGCCTGGCCAAGGAGTACATCGACCCTGAGACCAAGAAGCACATCCCGTACCGCGAGCACAAGA
GCCTGACGGGCACGGCGCGCTACATGAGCATCAACACGCACCTGGGCAAGGAGCAGAGCCGCCG
GGACGACCTGGAAGCGCTAGGGCACATGTTCATGTACTTCCTACGCGGCAGTCTGCCCTGGCAG
GGGCTCAAGGCGGACACGCTGAAGGAACGCTACCAGAAGATTGGTGATACCAAGCGTGCCACGC
CAATCGAGGTGCTGTGTGAGAGCTTCCCGGAGGAGATGGCCACCTACTTGCGCTATGTGCGGCG
CCTAGACTTCTTTGAGAAGCCAGACTACGACTACCTGAGGAAGCTCTTCACCGACCTCTTCGAC
CGCAGCGGCTACGTGTTTGACTACGAGTATGACTGGGCCGGCAAGCCCCTGCGACACCTGGGGC
TCCATCCTGTCCTGACATCCGCTCTCGCAGCCGACACCTATCGGCACCGTCCATCCTGATGTGC
CCTCCCAGCCGCCACATCGTGACAAAGCTCAGCTCCACACCAAGAACCAGGCGCTGAACTCCAC
CAATGGAGAGCTGAACACAGACGACCCCACCGCGGGCCACTCCAACGCCCCCATCGCGGCCCCT
GCAGAAGTAGAGGTGGCGGATGAAACCAAGTGCTGCTGCTTCTTCAAGAGGAGGAAGAGAAAAT
CGCTGCAGCGACATAAGTGAGGGTGGGTGCAGCCGCTGCCCAAGATCCCCAAGCGGGTGTCTAG
GAAGCTGGTAGTGTCCTCAGTGGCGTGGGGCTCCTTGGCCCACCTGCAGGCACCGTCTTTCAGG
ACTTGGGGTCACTTCCTTCACACAGGACTTTGGCGGAAATCTCTACACCCGTGTCTCGTCATCC
CCTTCGAGAGCATTAACTATTTAAAACCAGGAGAGAAGCGCTGCGCCGTCCCTGCTGCGCCCCT
GTTAGCTCATAAAGTCCAGCTTGTCCCCTCAATCCAAAGGCCATTTTCTCGAGGGGGGGCAGGC
CCGGGCATGGGCATCACACGGGGAGGCCTCAGCCACCAAAGGGGAGGCAAGTGCACTACCACAA
TGCTGCACCAAAGCCGGGGCGGAGCGTGGGATGGTCACTGCACAGGGACTGGTATGGGCCCTAC
AGAGCCAGGGCGGCCGTGACCCGTGTCCCTGCGTGCAGGGCCCATGGGACAGAATCGCCTTAAC
GCCTGGCCCGGGGCCGCAGAGAGGCGGTCCCACGGGAGGGCCAGGCCTTGGTCGCGGGAGCTGA
GTTCTTGCTTTACGTCGTGTACAGAAATGAACTTATGTTTCTCTGGCGCTTCCTTGAAGCCGTA
GAGTTTAGGGGCTTTTTTTAAAAAAAAAGAATAAAAGAAAATAAAACCCTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001029042	(Get FASTA)	NCBI Sequence Viewer
	NP_075590	(Get FASTA)	NCBI Sequence Viewer
	XP_006241063	(Get FASTA)	NCBI Sequence Viewer
	XP_006241065	(Get FASTA)	NCBI Sequence Viewer
	XP_008763352	(Get FASTA)	NCBI Sequence Viewer
	XP_038935799	(Get FASTA)	NCBI Sequence Viewer
	XP_038935800	(Get FASTA)	NCBI Sequence Viewer
	XP_063120298	(Get FASTA)	NCBI Sequence Viewer
	XP_063120299	(Get FASTA)	NCBI Sequence Viewer
	XP_063120300	(Get FASTA)	NCBI Sequence Viewer
	XP_063120301	(Get FASTA)	NCBI Sequence Viewer
	XP_063120302	(Get FASTA)	NCBI Sequence Viewer
	XP_063120303	(Get FASTA)	NCBI Sequence Viewer
	XP_063120304	(Get FASTA)	NCBI Sequence Viewer
	XP_063120305	(Get FASTA)	NCBI Sequence Viewer
	XP_063120306	(Get FASTA)	NCBI Sequence Viewer
	XP_063120307	(Get FASTA)	NCBI Sequence Viewer
	XP_063120308	(Get FASTA)	NCBI Sequence Viewer
	XP_063120309	(Get FASTA)	NCBI Sequence Viewer
	XP_063120310	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52201	(Get FASTA)	NCBI Sequence Viewer
	AAH72533	(Get FASTA)	NCBI Sequence Viewer
	AAH99758	(Get FASTA)	NCBI Sequence Viewer
	EDL89253	(Get FASTA)	NCBI Sequence Viewer
	EDL89254	(Get FASTA)	NCBI Sequence Viewer
	EDL89255	(Get FASTA)	NCBI Sequence Viewer
	EDL89256	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025266
	ENSRNOP00000025266.6
	ENSRNOP00000072196
	ENSRNOP00000072196.1
	ENSRNOP00055045663
	ENSRNOP00060043689
	ENSRNOP00065024705
GenBank Protein	Q62762	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_075590 ⟸ NM_023102
- Peptide Label:	isoform 2
- UniProtKB:	A6K8I3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDFDKKGGKGELEEGRRMSKTGTNRSNHGVRNSGTSSGVLMVGPNFRVGKKIGCGNFGELRLGK NLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLSTTGVPQVYYFGPCGKYNAMVLELLGPSLEDL FDLCDRTFTLKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGSKRQHSIHIIDFGLAK EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA DTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGY VFDYEYDWAGKPLPTPIGTVHPDVPSQPPHRDKAQLHTKNQALNSTNGELNTDDPTAGHSNAPI AAPAEVEVADETKCCCFFKRRKRKSLQRHK hide sequence

RefSeq Acc Id:	NP_001029042 ⟸ NM_001033870
- Peptide Label:	isoform 1
- UniProtKB:	Q6IMY5 (UniProtKB/Swiss-Prot), Q62762 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDFDKKGGKGELEEGRRMSKTGTNRSNHGVRNSGTSSGVLMVGPNFRVGKKIGCGNFGELRLGK NLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLSTTEGVPQVYYFGPCGKYNAMVLELLGPSLED LFDLCDRTFTLKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRPGSKRQHSIHIIDFGLA KEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLK ADTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSG YVFDYEYDWAGKPLPTPIGTVHPDVPSQPPHRDKAQLHTKNQALNSTNGELNTDDPTAGHSNAP IAAPAEVEVADETKCCCFFKRRKRKSLQRHK hide sequence

RefSeq Acc Id:	XP_006241063 ⟸ XM_006241001
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHQ2 (UniProtKB/TrEMBL), A6K8I6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDFDKKGGKGELEEGRRMSKTGTNRSNHGVRNSGTSSGVLMVGPNFRVGKKIGCGNFGELRLGK NLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLSTTGEDTGRGAALLGGQGLRTPSIDVSLAEGV PQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQLITRMEYVHTKSLIYRDV KPENFLVGRPGSKRQHSIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQS RRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYV RRLDFFEKPDYDYLRKLFTDLFDRSGYVFDYEYDWAGKPLPTPIGTVHPDVPSQPPHRDKAQLH TKNQALNSTNGELNTDDPTAGHSNAPIAAPAEVEVADETKCCCFFKRRKRKSLQRHK hide sequence

RefSeq Acc Id:

XP_006241065 ⟸ XM_006241003

- Peptide Label:

isoform X4

- Sequence:

show sequence

MGTAHSIPSASHLGRKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLSTTEGVPQVYYFGPCG
KYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQLITRMEYVHTKSLIYRDVKPENFLVGRP
GSKRQHSIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGH
MFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPD
YDYLRKLFTDLFDRSGYVFDYEYDWAGKPLPTPIGTVHPDVPSQPPHRDKAQLHTKNQALNSTN
GELNTDDPTAGHSNAPIAAPAEVEVADETKCCCFFKRRKRKSLQRHK

hide sequence

RefSeq Acc Id:	XP_008763352 ⟸ XM_008765130
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHQ2 (UniProtKB/TrEMBL), A6K8I6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDFDKKGGKGELEEGRRMSKTGTNRSNHGVRNSGTSSGVLMVGPNFRVGKKIGCGNFGELRLGK NLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLSTTGEDTGRGAALLGGQGLRTPSIDVSLAEGV PQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKTVLMIAIQLITRMEYVHTKSLIYRDV KPENFLVGRPGSKRQHSIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQS RRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYV RRLDFFEKPDYDYLRKLFTDLFDRSGYVFDYEYDWAGKPLPTPIGTVHPDVPSQPPHRDKAQLH TKNQALNSTNGELNTDDPTAGHSNAPIAAPAEVEVADETKCCCFFKRRKRKSLQRHK hide sequence

RefSeq Acc Id:

ENSRNOP00000072196 ⟸ ENSRNOT00000080342

RefSeq Acc Id:

ENSRNOP00000025266 ⟸ ENSRNOT00000025266

RefSeq Acc Id:	XP_038935799 ⟸ XM_039079871
- Peptide Label:	isoform X3
- UniProtKB:	A6K8I3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935800 ⟸ XM_039079872
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063120303 ⟸ XM_063264233
- Peptide Label:	isoform X2
- UniProtKB:	Q6IMY5 (UniProtKB/Swiss-Prot), Q62762 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063120298 ⟸ XM_063264228
- Peptide Label:	isoform X2
- UniProtKB:	Q6IMY5 (UniProtKB/Swiss-Prot), Q62762 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063120300 ⟸ XM_063264230
- Peptide Label:	isoform X2
- UniProtKB:	Q6IMY5 (UniProtKB/Swiss-Prot), Q62762 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063120302 ⟸ XM_063264232
- Peptide Label:	isoform X2
- UniProtKB:	Q6IMY5 (UniProtKB/Swiss-Prot), Q62762 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063120305 ⟸ XM_063264235
- Peptide Label:	isoform X3
- UniProtKB:	A6K8I3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120299 ⟸ XM_063264229
- Peptide Label:	isoform X2
- UniProtKB:	Q6IMY5 (UniProtKB/Swiss-Prot), Q62762 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063120306 ⟸ XM_063264236
- Peptide Label:	isoform X3
- UniProtKB:	A6K8I3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120304 ⟸ XM_063264234
- Peptide Label:	isoform X2
- UniProtKB:	Q6IMY5 (UniProtKB/Swiss-Prot), Q62762 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063120301 ⟸ XM_063264231
- Peptide Label:	isoform X2
- UniProtKB:	Q6IMY5 (UniProtKB/Swiss-Prot), Q62762 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063120310 ⟸ XM_063264240
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063120309 ⟸ XM_063264239
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063120308 ⟸ XM_063264238
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063120307 ⟸ XM_063264237
- Peptide Label:	isoform X4

Protein Domains

Casein kinase 1 gamma C-terminal Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62762-F1-model_v2	AlphaFold	Q62762	1-415	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695011

Promoter ID:

EPDNEW_R5536

Type:

initiation region

Name:

Csnk1g2_1

Description:

casein kinase 1, gamma 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	11,963,284 - 11,963,344	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621407	AgrOrtholog
BioCyc Gene	G2FUF-34956	BioCyc
Ensembl Genes	ENSRNOG00000018529	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055031957	UniProtKB/Swiss-Prot
	ENSRNOG00060030231	UniProtKB/Swiss-Prot
	ENSRNOG00065018469	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000025266.7	UniProtKB/TrEMBL
	ENSRNOT00000080342	ENTREZGENE
	ENSRNOT00000080342.2	UniProtKB/Swiss-Prot
	ENSRNOT00055055292	UniProtKB/Swiss-Prot
	ENSRNOT00060052517	UniProtKB/Swiss-Prot
	ENSRNOT00065031018	UniProtKB/Swiss-Prot
Gene3D-CATH	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7098992	IMAGE-MGC_LOAD
	IMAGE:7929718	IMAGE-MGC_LOAD
InterPro	Casein_kinase-1_gamma_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:65278	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124521	IMAGE-MGC_LOAD
	MGC:91673	IMAGE-MGC_LOAD
NCBI Gene	65278	ENTREZGENE
PANTHER	CASEIN KINASE I ISOFORM GAMMA-2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CASEIN KINASE-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CK1gamma_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pkinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Csnk1g2	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018529	RatGTEx
	ENSRNOG00055031957	RatGTEx
	ENSRNOG00060030231	RatGTEx
	ENSRNOG00065018469	RatGTEx
SMART	S_TKc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0H2UHQ2	ENTREZGENE, UniProtKB/TrEMBL
	A6K8I3	ENTREZGENE, UniProtKB/TrEMBL
	A6K8I6	ENTREZGENE, UniProtKB/TrEMBL
	KC1G2_RAT	UniProtKB/Swiss-Prot
	Q499U5_RAT	UniProtKB/TrEMBL
	Q62762	ENTREZGENE
	Q6IMY5	ENTREZGENE
UniProt Secondary	Q6IMY5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Csnk1g2	casein kinase 1, gamma 2		casein kinase 1 gamma 2 isoform	Name updated	1299863	APPROVED
2002-08-07	Csnk1g2	casein kinase 1 gamma 2 isoform			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_protein	414 amino acids; 47.4 kDa	727981

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)